|
Plant ANatomical entity (PAN): gynoecium
(show info)
Phenotype Ontology
Like Gene Ontology (GO), phenotypy ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Phenotype ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology (DO) DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology (HP) HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology (MP) MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology (WP) WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology (YP) Based on YP which is the major contributor to the Ascomycete phenotype ontology, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology (FP) FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology (FA) FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology (ZA) ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology (XA) XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology (AP) As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology (EC) Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- DrugBank ATC (DB) Ontology (DB) In the Anatomical Therapeutic Chemical (ATC) classification system, drugs are classified in groups at five different levels according to the organ or system (1st level, anatomical main group) on which they act and their therapeutic (2nd level, therapeutic subgroup), pharmacological (3rd level, pharmacological subgroup) and chemical properties (4th level, chemical subgroup; 5th level, chemical substance). Only drugs in DrugBank are considered.
- UniProtKB KeyWords (KW) Ontology (KW) Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- UniProtKB UniPathway (UP) Ontology (UP) UP is a fully manually curated resource for the representation and annotation of metabolic pathways, being used as controlled vocabulary for pathway annotation in UniProtKB.
Structural Domain Phenotype Ontology and its Annotations
Structural Classification of Proteins (SCOP) classifies evolutionary-related domains into Superfamily level and Family level. Using the phenotype ontologies above, we have generated the domain-centric phenotype annotations, and further identified those phenotype terms which are the most informative to annotate SCOP domains. Promisingly, domain-centric phenotypic annotations can serve as an alternative starting point to explore genotype-phenotype relationships. We provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Structural Domain Disease Ontology (DO) Ontology (SDDO) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DO.txt, and the corresponding ontology:SDDO.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Human Phenotype (HP) Ontology (SDHP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2HP.txt, and the corresponding ontology:SDHP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Mouse Phenotype (MP) Ontology (SDMP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2MP.txt, and the corresponding ontology:SDMP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Worm Phenotype (WP) Ontology (SDWP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2WP.txt, and the corresponding ontology:SDWP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Yeast Phenotype (YP) Ontology (SDYP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2YP.txt, and the corresponding ontology:SDYP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Phenotype (FP) Ontology (SDFP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FP.txt, and the corresponding ontology:SDFP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Anatomy (FA) Ontology (SDFA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FA.txt, and the corresponding ontology:SDFA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Zebrafish Anatomy (ZA) Ontology (SDZA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2ZA.txt, and the corresponding ontology:SDZA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Xenopus Anatomy (XA) Ontology (SDXA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2XA.txt, and the corresponding ontology:SDXA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Arabidopsis Plant Ontology (AP) Ontology (SDAP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2AP.txt, and the corresponding ontology:SDAP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Enzyme Commission (EC) Ontology (SDEC) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2EC.txt, and the corresponding ontology:SDEC.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain DrugBank ATC (DB) Ontology (SDDB) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DB.txt, and the corresponding ontology:SDDB.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB KeyWords (KW) Ontology (SDKW) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2KW.txt, and the corresponding ontology:SDKW.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB UniPathway (UP) Ontology (SDUP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2UP.txt, and the corresponding ontology:SDUP.txt) and mysql tables (Domain2PO.sql.gz).
Supra-domain Phenotype Ontology and its Annotations
Although domain-centric annotations hold great promise in describing phenotypic nature of independent domains, most domains themselves may not just work alone. In multi-domain proteins, they may be combined together to form distinct domain architectures. The recombination of the existing domains is considered as one of major driving forces for phenotypic diversificaation. As an extension, we have also generated supra-domain phenotype ontology and its annotations. Compared to domain-centric phenotype ontology and annotations (SCOP domains at the Superfamily level and Family level), this version focuses on supra-domains and individual SCOP domains ONLY at the Superfamily level. Besides, in terms of individual superfamilies, their annotations from the domain-centric version may be different from those from supra-domains version. Depending on your focus, the former should be used for the consideration of both the Superfamily level and Family level, otherwise the latter should be used if you are interested in domain combinations. Also, we provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Supra-domain Domain Disease Ontology (DO) Ontology (SPDO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DO.txt, and the corresponding ontology:SPDO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Human Phenotype (HP) Ontology (SPHO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2HP.txt, and the corresponding ontology:SPHO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Mouse Phenotype (MP) Ontology (SPMP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2MP.txt, and the corresponding ontology:SPMP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Worm Phenotype (WP) Ontology (SPWP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2WP.txt, and the corresponding ontology:SPWP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Yeast Phenotype (YP) Ontology (SPYP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2YP.txt, and the corresponding ontology:SPYP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Phenotype (FP) Ontology (SPFP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FP.txt, and the corresponding ontology:SPFP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Anatomy (FA) Ontology (SPFA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FA.txt, and the corresponding ontology:SPFA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Zebrafish Anatomy (ZA) Ontology (SPZA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2ZA.txt, and the corresponding ontology:SPZA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Xenopus Anatomy (XA) Ontology (SPXA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2XA.txt, and the corresponding ontology:SPXA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Arabidopsis Plant Ontology (AP) Ontology (SPAP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2AP.txt, and the corresponding ontology:SPAP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Enzyme Commission (EC) Ontology (SPEC) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2EC.txt, and the corresponding ontology:SPEC.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain DrugBank ATC (DB) Ontology (SPDB) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DB.txt, and the corresponding ontology:SPDB.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB KeyWords (KW) Ontology (SPKW) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2KW.txt, and the corresponding ontology:SPKW.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB UniPathway (UP) Ontology (SPUP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2UP.txt, and the corresponding ontology:SPUP.txt) and mysql tables (SP2PO.sql.gz).
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Superfamily domains annotated to this AP term (Not in SDAP)
Highlighted in gray are those with FDR_all>0.001
SCOP term | FDR (all) | Annotation (direct or inherited) |
RibA-like | 0 | DIRECT |
N-terminal, heterodimerisation domain of RBP7 (RpoE) | 0 | DIRECT |
YrdC/RibB | 0 | DIRECT |
Ribosomal protein S2 | 0 | DIRECT |
SMR domain-like | 0 | DIRECT |
FF domain | 0 | DIRECT |
Expressed protein At2g23090/F21P24.15 | 0 | DIRECT |
L9 N-domain-like | 0 | DIRECT |
Signal peptide-binding domain | 0 | DIRECT |
Glycerol-3-phosphate (1)-acyltransferase | 0 | DIRECT |
PABC (PABP) domain | 0 | DIRECT |
lambda repressor-like DNA-binding domains | 0 | DIRECT |
MOSC N-terminal domain-like | 0 | DIRECT |
Sigma2 domain of RNA polymerase sigma factors | 0 | DIRECT |
beta-N-acetylhexosaminidase-like domain | 0 | DIRECT |
Electron transport accessory proteins | 0 | DIRECT |
Phosphofructokinase | 0 | DIRECT |
DNA repair protein MutS, domain II | 0 | DIRECT |
RraA-like | 0 | DIRECT |
CYTH-like phosphatases | 0 | DIRECT |
S-adenosylmethionine synthetase | 0 | DIRECT |
Serine metabolism enzymes domain | 0 | DIRECT |
Preprotein translocase SecE subunit | 0 | DIRECT |
Magnesium transport protein CorA, transmembrane region | 0 | DIRECT |
Profilin (actin-binding protein) | 0 | DIRECT |
Folate-binding domain | 0 | DIRECT |
Chelatase | 0 | DIRECT |
Tetrahydrobiopterin biosynthesis enzymes-like | 0 | DIRECT |
Nitrite and sulphite reductase 4Fe-4S domain-like | 0 | DIRECT |
Succinyl-CoA synthetase domains | 0 | DIRECT |
Ribosomal protein L4 | 0 | DIRECT |
Ribosomal protein L19 (L19e) | 0 | DIRECT |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
Lipoxigenase | 0 | DIRECT |
Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | DIRECT |
Peptidase/esterase 'gauge' domain | 0 | DIRECT |
Single hybrid motif | 0 | DIRECT |
Ribosomal protein L10-like | 0 | DIRECT |
N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0 | DIRECT |
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | DIRECT |
Cryptochrome/photolyase FAD-binding domain | 0 | DIRECT |
Ribosomal protein L14 | 0 | DIRECT |
Phosphoglucomutase, first 3 domains | 0 | DIRECT |
Casein kinase II beta subunit | 0 | DIRECT |
Heme-dependent catalase-like | 0 | DIRECT |
Seven-hairpin glycosidases | 0 | DIRECT |
D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | DIRECT |
beta-carbonic anhydrase, cab | 0 | DIRECT |
Acyl-CoA binding protein | 0 | DIRECT |
Tautomerase/MIF | 0 | DIRECT |
Oxidoreductase molybdopterin-binding domain | 0 | DIRECT |
Tim10-like | 0 | DIRECT |
MurD-like peptide ligases, catalytic domain | 0 | DIRECT |
Ribosomal proteins S24e, L23 and L15e | 0 | DIRECT |
Phosphoglycerate kinase | 0 | DIRECT |
ATP synthase (F1-ATPase), gamma subunit | 0 | DIRECT |
MurD-like peptide ligases, peptide-binding domain | 0 | DIRECT |
BolA-like | 0 | DIRECT |
LeuD/IlvD-like | 0 | DIRECT |
LysM domain | 0 | DIRECT |
Peptide methionine sulfoxide reductase | 0 | DIRECT |
AMPKBI-like | 0 | DIRECT |
Head domain of nucleotide exchange factor GrpE | 0 | DIRECT |
Ribosomal protein L29 (L29p) | 0 | DIRECT |
Nicotinate/Quinolinate PRTase N-terminal domain-like | 0 | DIRECT |
ssDNA-binding transcriptional regulator domain | 0 | DIRECT |
Nicotinate/Quinolinate PRTase C-terminal domain-like | 0 | DIRECT |
Ribosomal protein S6 | 0 | DIRECT |
Ribosomal L11/L12e N-terminal domain | 0 | DIRECT |
TATA-box binding protein-like | 0 | DIRECT |
Ribosomal protein L39e | 0 | DIRECT |
Ligand-binding domain in the NO signalling and Golgi transport | 0 | DIRECT |
XPC-binding domain | 0 | DIRECT |
Alpha subunit of glutamate synthase, C-terminal domain | 0 | DIRECT |
Creatinase/prolidase N-terminal domain | 0 | DIRECT |
tRNA-binding arm | 0 | DIRECT |
FKBP-like | 0 | DIRECT |
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | DIRECT |
Pentapeptide repeat-like | 0 | DIRECT |
P-domain of calnexin/calreticulin | 0 | DIRECT |
Inorganic pyrophosphatase | 0 | DIRECT |
Creatinase/aminopeptidase | 0 | DIRECT |
Cytochrome c | 0 | DIRECT |
Flavoproteins | 0 | DIRECT |
Helical domain of Sec23/24 | 0 | DIRECT |
Cdc48 domain 2-like | 0 | DIRECT |
6-phosphogluconate dehydrogenase C-terminal domain-like | 0 | DIRECT |
Zn-finger domain of Sec23/24 | 0 | DIRECT |
ADC synthase | 0 | DIRECT |
Cu,Zn superoxide dismutase-like | 0 | DIRECT |
eIF1-like | 0 | DIRECT |
Ribosomal protein L31e | 0 | DIRECT |
R3H domain | 0 | DIRECT |
FAD-dependent thiol oxidase | 0 | DIRECT |
Coiled-coil domain of nucleotide exchange factor GrpE | 0 | DIRECT |
Homocysteine S-methyltransferase | 0 | DIRECT |
Granulin repeat | 0 | DIRECT |
alpha-helical ferredoxin | 0 | DIRECT |
Transducin (alpha subunit), insertion domain | 0 | DIRECT |
C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
SH3-domain | 0 | DIRECT |
NHL repeat | 0 | DIRECT |
Ribosomal protein L13 | 0 | DIRECT |
Peptidyl-tRNA hydrolase-like | 0 | DIRECT |
C-terminal autoproteolytic domain of nucleoporin nup98 | 0 | DIRECT |
Globin-like | 0 | DIRECT |
Glutamine synthetase/guanido kinase | 0 | DIRECT |
Lipocalins | 0 | DIRECT |
Ribosomal protein L30p/L7e | 0 | DIRECT |
Prokaryotic ribosomal protein L17 | 0 | DIRECT |
GHMP Kinase, C-terminal domain | 0 | DIRECT |
Putative isomerase YbhE | 0 | DIRECT |
Phosphoglucomutase, C-terminal domain | 0 | DIRECT |
LDH C-terminal domain-like | 0 | DIRECT |
ADC-like | 0 | DIRECT |
E2F-DP heterodimerization region | 0 | DIRECT |
Dimeric alpha+beta barrel | 0 | DIRECT |
GlnB-like | 0 | DIRECT |
Aconitase iron-sulfur domain | 0 | DIRECT |
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | DIRECT |
Hypothetical protein YjiA, C-terminal domain | 0 | DIRECT |
AlbA-like | 0 | DIRECT |
Glutamine synthetase, N-terminal domain | 0 | DIRECT |
HesB-like domain | 0 | DIRECT |
S13-like H2TH domain | 0 | DIRECT |
NSFL1 (p97 ATPase) cofactor p47, SEP domain | 0 | DIRECT |
PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | DIRECT |
Chorismate mutase II | 0 | DIRECT |
Clc chloride channel | 0 | DIRECT |
Leukotriene A4 hydrolase N-terminal domain | 0 | DIRECT |
Ribosomal protein L16p/L10e | 0 | DIRECT |
RNA-binding domain, RBD | 0.0001453 | DIRECT |
NAD(P)-binding Rossmann-fold domains | 0.001539 | INHERITED FROM: carpel |
Mitochondrial carrier | 0.01166 | INHERITED FROM: carpel |
Thioredoxin-like | 0.01266 | INHERITED FROM: carpel |
ClpP/crotonase | 0.02028 | INHERITED FROM: carpel |
GroEL apical domain-like | 0.02839 | INHERITED FROM: carpel |
FtsH protease domain-like | 0.04229 | INHERITED FROM: carpel |
HLH, helix-loop-helix DNA-binding domain | 1 | INHERITED FROM: portion of transmitting tissue |
DNA-binding pseudobarrel domain | 1 | INHERITED FROM: ovary placenta || plant ovary |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 1 | INHERITED FROM: style |
Subtilisin-like | 1 | INHERITED FROM: style |
Terpenoid synthases | 1 | INHERITED FROM: stigma |
Terpenoid cyclases/Protein prenyltransferases | 1 | INHERITED FROM: stigma |
Homeodomain-like | 1 | INHERITED FROM: ovary replum || style |
SCOP term | FDR (all) | Annotation (direct or inherited) |
RibA-like | 0 | Direct |
N-terminal, heterodimerisation domain of RBP7 (RpoE) | 0 | Direct |
YrdC/RibB | 0 | Direct |
Ribosomal protein S2 | 0 | Direct |
SMR domain-like | 0 | Direct |
FF domain | 0 | Direct |
Expressed protein At2g23090/F21P24.15 | 0 | Direct |
L9 N-domain-like | 0 | Direct |
Signal peptide-binding domain | 0 | Direct |
Glycerol-3-phosphate (1)-acyltransferase | 0 | Direct |
PABC (PABP) domain | 0 | Direct |
lambda repressor-like DNA-binding domains | 0 | Direct |
MOSC N-terminal domain-like | 0 | Direct |
Sigma2 domain of RNA polymerase sigma factors | 0 | Direct |
beta-N-acetylhexosaminidase-like domain | 0 | Direct |
Electron transport accessory proteins | 0 | Direct |
Phosphofructokinase | 0 | Direct |
DNA repair protein MutS, domain II | 0 | Direct |
RraA-like | 0 | Direct |
CYTH-like phosphatases | 0 | Direct |
S-adenosylmethionine synthetase | 0 | Direct |
Serine metabolism enzymes domain | 0 | Direct |
Preprotein translocase SecE subunit | 0 | Direct |
Magnesium transport protein CorA, transmembrane region | 0 | Direct |
Profilin (actin-binding protein) | 0 | Direct |
Folate-binding domain | 0 | Direct |
Chelatase | 0 | Direct |
Tetrahydrobiopterin biosynthesis enzymes-like | 0 | Direct |
Nitrite and sulphite reductase 4Fe-4S domain-like | 0 | Direct |
Succinyl-CoA synthetase domains | 0 | Direct |
Ribosomal protein L4 | 0 | Direct |
Ribosomal protein L19 (L19e) | 0 | Direct |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
Lipoxigenase | 0 | Direct |
Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | Direct |
Peptidase/esterase 'gauge' domain | 0 | Direct |
Single hybrid motif | 0 | Direct |
Ribosomal protein L10-like | 0 | Direct |
N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0 | Direct |
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | Direct |
Cryptochrome/photolyase FAD-binding domain | 0 | Direct |
Ribosomal protein L14 | 0 | Direct |
Phosphoglucomutase, first 3 domains | 0 | Direct |
Casein kinase II beta subunit | 0 | Direct |
Heme-dependent catalase-like | 0 | Direct |
Seven-hairpin glycosidases | 0 | Direct |
D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | Direct |
beta-carbonic anhydrase, cab | 0 | Direct |
Acyl-CoA binding protein | 0 | Direct |
Tautomerase/MIF | 0 | Direct |
Oxidoreductase molybdopterin-binding domain | 0 | Direct |
Tim10-like | 0 | Direct |
MurD-like peptide ligases, catalytic domain | 0 | Direct |
Ribosomal proteins S24e, L23 and L15e | 0 | Direct |
Phosphoglycerate kinase | 0 | Direct |
ATP synthase (F1-ATPase), gamma subunit | 0 | Direct |
MurD-like peptide ligases, peptide-binding domain | 0 | Direct |
BolA-like | 0 | Direct |
LeuD/IlvD-like | 0 | Direct |
LysM domain | 0 | Direct |
Peptide methionine sulfoxide reductase | 0 | Direct |
AMPKBI-like | 0 | Direct |
Head domain of nucleotide exchange factor GrpE | 0 | Direct |
Ribosomal protein L29 (L29p) | 0 | Direct |
Nicotinate/Quinolinate PRTase N-terminal domain-like | 0 | Direct |
ssDNA-binding transcriptional regulator domain | 0 | Direct |
Nicotinate/Quinolinate PRTase C-terminal domain-like | 0 | Direct |
Ribosomal protein S6 | 0 | Direct |
Ribosomal L11/L12e N-terminal domain | 0 | Direct |
TATA-box binding protein-like | 0 | Direct |
Ribosomal protein L39e | 0 | Direct |
Ligand-binding domain in the NO signalling and Golgi transport | 0 | Direct |
XPC-binding domain | 0 | Direct |
Alpha subunit of glutamate synthase, C-terminal domain | 0 | Direct |
Creatinase/prolidase N-terminal domain | 0 | Direct |
tRNA-binding arm | 0 | Direct |
FKBP-like | 0 | Direct |
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | Direct |
Pentapeptide repeat-like | 0 | Direct |
P-domain of calnexin/calreticulin | 0 | Direct |
Inorganic pyrophosphatase | 0 | Direct |
Creatinase/aminopeptidase | 0 | Direct |
Cytochrome c | 0 | Direct |
Flavoproteins | 0 | Direct |
Helical domain of Sec23/24 | 0 | Direct |
Cdc48 domain 2-like | 0 | Direct |
6-phosphogluconate dehydrogenase C-terminal domain-like | 0 | Direct |
Zn-finger domain of Sec23/24 | 0 | Direct |
ADC synthase | 0 | Direct |
Cu,Zn superoxide dismutase-like | 0 | Direct |
eIF1-like | 0 | Direct |
Ribosomal protein L31e | 0 | Direct |
R3H domain | 0 | Direct |
FAD-dependent thiol oxidase | 0 | Direct |
Coiled-coil domain of nucleotide exchange factor GrpE | 0 | Direct |
Homocysteine S-methyltransferase | 0 | Direct |
Granulin repeat | 0 | Direct |
alpha-helical ferredoxin | 0 | Direct |
Transducin (alpha subunit), insertion domain | 0 | Direct |
C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
SH3-domain | 0 | Direct |
NHL repeat | 0 | Direct |
Ribosomal protein L13 | 0 | Direct |
Peptidyl-tRNA hydrolase-like | 0 | Direct |
C-terminal autoproteolytic domain of nucleoporin nup98 | 0 | Direct |
Globin-like | 0 | Direct |
Glutamine synthetase/guanido kinase | 0 | Direct |
Lipocalins | 0 | Direct |
Ribosomal protein L30p/L7e | 0 | Direct |
Prokaryotic ribosomal protein L17 | 0 | Direct |
GHMP Kinase, C-terminal domain | 0 | Direct |
Putative isomerase YbhE | 0 | Direct |
Phosphoglucomutase, C-terminal domain | 0 | Direct |
LDH C-terminal domain-like | 0 | Direct |
ADC-like | 0 | Direct |
E2F-DP heterodimerization region | 0 | Direct |
Dimeric alpha+beta barrel | 0 | Direct |
GlnB-like | 0 | Direct |
Aconitase iron-sulfur domain | 0 | Direct |
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | Direct |
Hypothetical protein YjiA, C-terminal domain | 0 | Direct |
AlbA-like | 0 | Direct |
Glutamine synthetase, N-terminal domain | 0 | Direct |
HesB-like domain | 0 | Direct |
S13-like H2TH domain | 0 | Direct |
NSFL1 (p97 ATPase) cofactor p47, SEP domain | 0 | Direct |
PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | Direct |
Chorismate mutase II | 0 | Direct |
Clc chloride channel | 0 | Direct |
Leukotriene A4 hydrolase N-terminal domain | 0 | Direct |
Ribosomal protein L16p/L10e | 0 | Direct |
RNA-binding domain, RBD | 0.0001453 | Direct |
NAD(P)-binding Rossmann-fold domains | 0.001539 | Inherited |
Mitochondrial carrier | 0.01166 | Inherited |
Thioredoxin-like | 0.01266 | Inherited |
ClpP/crotonase | 0.02028 | Inherited |
GroEL apical domain-like | 0.02839 | Inherited |
FtsH protease domain-like | 0.04229 | Inherited |
HLH, helix-loop-helix DNA-binding domain | 1 | Inherited |
DNA-binding pseudobarrel domain | 1 | Inherited |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 1 | Inherited |
Subtilisin-like | 1 | Inherited |
Terpenoid synthases | 1 | Inherited |
Terpenoid cyclases/Protein prenyltransferases | 1 | Inherited |
Homeodomain-like | 1 | Inherited |
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Family domains annotated to this AP term (SDAP level: Least Informative)
Highlighted in gray are those with FDR_all>0.001
SCOP term | FDR (all) | Annotation (direct or inherited) |
SH3-domain | 0 | DIRECT |
GHMP Kinase, N-terminal domain | 0 | DIRECT |
RelA/SpoT domain | 0 | DIRECT |
Tail specific protease, catalytic domain | 0 | DIRECT |
Smr domain | 0 | DIRECT |
PAPS reductase-like | 0 | DIRECT |
Phytochrome-specific domain | 0 | DIRECT |
Ran-binding domain | 0 | DIRECT |
ZZ domain | 0 | DIRECT |
Cytidylyltransferase | 0 | DIRECT |
Branched-chain alpha-keto acid dehydrogenase Pyr module | 0 | DIRECT |
Subtilase propeptides/inhibitors | 0 | DIRECT |
DNA repair glycosylase, 2 C-terminal domains | 0 | DIRECT |
AMPKBI-like | 0 | DIRECT |
NADPH-cytochrome p450 reductase-like | 0 | DIRECT |
GAF domain | 0 | DIRECT |
Acyl-ACP thioesterase-like | 0 | DIRECT |
Homoserine dehydrogenase-like | 0 | DIRECT |
HAT/Suf repeat | 0 | DIRECT |
La domain | 0 | DIRECT |
Coiled-coil domain of nucleotide exchange factor GrpE | 0 | DIRECT |
Tim10/DDP | 0 | DIRECT |
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | DIRECT |
Cytochrome p450 reductase N-terminal domain-like | 0 | DIRECT |
RhoGDI-like | 0 | DIRECT |
ATP sulfurylase catalytic domain | 0 | DIRECT |
Ribosomal protein L30p/L7e | 0 | DIRECT |
Ribosomal protein L39e | 0 | DIRECT |
Ribosomal protein L4 | 0 | DIRECT |
beta-N-acetylhexosaminidase catalytic domain | 0 | DIRECT |
Trunk domain of Sec23/24 | 0 | DIRECT |
(Glycosyl)asparaginase | 0 | DIRECT |
Ribosomal protein S2 | 0 | DIRECT |
Lipoxigenase N-terminal domain | 0 | DIRECT |
GroES | 0 | DIRECT |
Peptide methionine sulfoxide reductase | 0 | DIRECT |
NADPH-cytochrome p450 reductase FAD-binding domain-like | 0 | DIRECT |
Pentapeptide repeats | 0 | DIRECT |
RWD domain | 0 | DIRECT |
D-ribulose-5-phosphate 3-epimerase | 0 | DIRECT |
LEA14-like | 0 | DIRECT |
Clp protease, ClpP subunit | 0 | DIRECT |
Enolase | 0 | DIRECT |
Creatinase/aminopeptidase | 0 | DIRECT |
Cation efflux protein cytoplasmic domain-like | 0 | DIRECT |
PDI-like | 0 | DIRECT |
Glutamine synthetase catalytic domain | 0 | DIRECT |
BolA-like | 0 | DIRECT |
Glyoxalase II (hydroxyacylglutathione hydrolase) | 0 | DIRECT |
NSFL1 (p97 ATPase) cofactor p47, SEP domain | 0 | DIRECT |
Transcriptional coactivator PC4 C-terminal domain | 0 | DIRECT |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
Poly(A) polymerase, PAP, N-terminal domain | 0 | DIRECT |
Heme-dependent catalases | 0 | DIRECT |
Reductases | 0 | DIRECT |
Ribosomal protein L29 (L29p) | 0 | DIRECT |
ATP sulfurylase N-terminal domain | 0 | DIRECT |
Sec63 N-terminal domain | 0 | DIRECT |
Dihydrodipicolinate reductase-like | 0 | DIRECT |
Acyl-CoA binding protein | 0 | DIRECT |
Thiolase-related | 0 | DIRECT |
S-adenosylmethionine synthetase | 0 | DIRECT |
Ribosomal protein L14 | 0 | DIRECT |
Cdc48 N-terminal domain-like | 0 | DIRECT |
Leukotriene A4 hydrolase catalytic domain | 0 | DIRECT |
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | DIRECT |
FF domain | 0 | DIRECT |
Ring hydroxylating alpha subunit ISP domain | 0 | DIRECT |
5' nucleotidase-like | 0 | DIRECT |
Peptidyl-tRNA hydrolase-like | 0 | DIRECT |
Cryptochrome/photolyase FAD-binding domain | 0 | DIRECT |
Methionine aminopeptidase, insert domain | 0 | DIRECT |
Ribosomal protein L19 (L19e) | 0 | DIRECT |
PCI domain (PINT motif) | 0 | DIRECT |
Leukotriene A4 hydrolase N-terminal domain | 0 | DIRECT |
Plant transcriptional regulator PBF-2 | 0 | DIRECT |
Group II chaperonin (CCT, TRIC), intermediate domain | 0 | DIRECT |
Glycerol-3-phosphate dehydrogenase | 0 | DIRECT |
Plant stress-induced protein | 0 | DIRECT |
Ribosomal L11/L12e N-terminal domain | 0 | DIRECT |
Cdc48 domain 2-like | 0 | DIRECT |
Class I alpha-1;2-mannosidase, catalytic domain | 0 | DIRECT |
GABARAP-like | 0 | DIRECT |
Eps15 homology domain (EH domain) | 0 | DIRECT |
Gtf glycosyltransferase | 0 | DIRECT |
G domain-linked domain | 0 | DIRECT |
Casein kinase II beta subunit | 0 | DIRECT |
Profilin (actin-binding protein) | 0 | DIRECT |
Sigma2 domain of RNA polymerase sigma factors | 0 | DIRECT |
1,3-glucuronyltransferase | 0 | DIRECT |
Chromo barrel domain | 0 | DIRECT |
Poly(A) polymerase, PAP, middle domain | 0 | DIRECT |
Ribosomal protein L3 | 0 | DIRECT |
AlkB-like | 0 | DIRECT |
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | DIRECT |
RNB domain-like | 0 | DIRECT |
Ribosomal protein L10e | 0 | DIRECT |
Homocysteine S-methyltransferase | 0 | DIRECT |
PUA domain | 0 | DIRECT |
C-terminal autoproteolytic domain of nucleoporin nup98 | 0 | DIRECT |
Signal peptide-binding domain | 0 | DIRECT |
DNase I-like | 0 | DIRECT |
NadC N-terminal domain-like | 0 | DIRECT |
Pseudouridine synthase II TruB | 0 | DIRECT |
Choline kinase | 0 | DIRECT |
D-ribose-5-phosphate isomerase (RpiA), catalytic domain | 0 | DIRECT |
Ribosomal protein S6 | 0 | DIRECT |
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain | 0 | DIRECT |
ATP synthase (F1-ATPase), gamma subunit | 0 | DIRECT |
HesB-like domain | 0 | DIRECT |
LON domain-like | 0 | DIRECT |
Aminoacid dehydrogenases | 0 | DIRECT |
STAR domain | 0 | DIRECT |
Poly(ADP-ribose) polymerase, C-terminal domain | 0 | DIRECT |
Helical domain of Sec23/24 | 0 | DIRECT |
3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB | 0 | DIRECT |
Oxidoreductase molybdopterin-binding domain | 0 | DIRECT |
beta-sandwich domain of Sec23/24 | 0 | DIRECT |
YicI N-terminal domain-like | 0 | DIRECT |
Ribosomal protein L31e | 0 | DIRECT |
MYND zinc finger | 0 | DIRECT |
Thioredoxin-like 2Fe-2S ferredoxin | 0 | DIRECT |
Adenosine-5'phosphosulfate kinase (APS kinase) | 0 | DIRECT |
NadC C-terminal domain-like | 0 | DIRECT |
2Fe-2S ferredoxin-related | 0 | DIRECT |
Ribosomal protein L13 | 0 | DIRECT |
Universal stress protein-like | 0 | DIRECT |
Glyoxalase I (lactoylglutathione lyase) | 0 | DIRECT |
LIM domain | 0 | DIRECT |
Group II chaperonin (CCT, TRIC), ATPase domain | 0 | DIRECT |
CAT-like | 0 | DIRECT |
Plant lipoxigenases | 0 | DIRECT |
B56-like | 0 | DIRECT |
alpha-Amylases, C-terminal beta-sheet domain | 0 | DIRECT |
FAD-dependent thiol oxidase | 0 | DIRECT |
Glycosyl hydrolases family 32 C-terminal domain | 0 | DIRECT |
Calnexin/calreticulin | 0 | DIRECT |
HEAT repeat | 0 | DIRECT |
Preprotein translocase SecE subunit | 0 | DIRECT |
Biotinyl/lipoyl-carrier proteins and domains | 0 | DIRECT |
Group II chaperonin (CCT, TRIC), apical domain | 0 | DIRECT |
Ubiquitin carboxyl-terminal hydrolase UCH-L | 0 | DIRECT |
SerA intervening domain-like | 0 | DIRECT |
Rps19E-like | 0 | DIRECT |
Prolyl oligopeptidase, N-terminal domain | 0 | DIRECT |
UDP-glucose pyrophosphorylase | 0 | DIRECT |
Glutamine synthetase, N-terminal domain | 0 | DIRECT |
LeuD-like | 0 | DIRECT |
Shikimate kinase (AroK) | 0 | DIRECT |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
Ribosomal protein S27e | 0 | DIRECT |
Sec63 C-terminal domain-like | 0 | DIRECT |
Molybdenum-containing oxidoreductases-like dimerisation domain | 0 | DIRECT |
Aminomethyltransferase folate-binding domain | 0 | DIRECT |
FKBP immunophilin/proline isomerase | 0 | DIRECT |
Phosphofructokinase | 0 | DIRECT |
P-domain of calnexin/calreticulin | 0 | DIRECT |
Spermidine synthase | 0 | DIRECT |
RNase Z-like | 0 | DIRECT |
Rubredoxin | 0 | DIRECT |
GDI-like N domain | 0 | DIRECT |
rRNA adenine dimethylase-like | 0 | DIRECT |
Receiver domain of the ethylene receptor | 0 | DIRECT |
IPP isomerase-like | 0 | DIRECT |
6-phosphogluconate dehydrogenase-like, N-terminal domain | 0 | DIRECT |
beta-carbonic anhydrase, cab | 0 | DIRECT |
Smc hinge domain | 0 | DIRECT |
Hypothetical protein At2g34160 | 0 | DIRECT |
Prolyl oligopeptidase, C-terminal domain | 0 | DIRECT |
Starch-binding domain | 0 | DIRECT |
Folylpolyglutamate synthetase | 0 | DIRECT |
Ribosomal protein S13 | 0 | DIRECT |
Nitrite and sulphite reductase 4Fe-4S domain-like | 0 | DIRECT |
EDF1-like | 0 | DIRECT |
Cystatins | 0 | DIRECT |
AMPK-beta glycogen binding domain-like | 0 | DIRECT |
BAR domain | 0 | DIRECT |
L23p | 0 | DIRECT |
Alpha subunit of glutamate synthase, C-terminal domain | 0 | DIRECT |
RraA-like | 0 | DIRECT |
Clc chloride channel | 0 | DIRECT |
LysM domain | 0 | DIRECT |
Galactosyltransferase LgtC | 0 | DIRECT |
Sigma4 domain | 0 | DIRECT |
Zn-finger domain of Sec23/24 | 0 | DIRECT |
gamma-carbonic anhydrase-like | 0 | DIRECT |
Hypothetical protein HI1317 | 0 | DIRECT |
R3H domain | 0 | DIRECT |
Hypothetical protein YjiA, C-terminal domain | 0 | DIRECT |
Succinyl-CoA synthetase, beta-chain, N-terminal domain | 0 | DIRECT |
Aconitase iron-sulfur domain | 0 | DIRECT |
PdxS-like | 0 | DIRECT |
Allosteric chorismate mutase | 0 | DIRECT |
Sedlin (SEDL) | 0 | DIRECT |
MIF-related | 0 | DIRECT |
glucose-1-phosphate thymidylyltransferase | 0 | DIRECT |
BphP N-terminal domain-like | 0 | DIRECT |
CoA-binding domain | 0 | DIRECT |
Anti-sigma factor antagonist SpoIIaa | 0 | DIRECT |
eIF1-like | 0 | DIRECT |
GlmU C-terminal domain-like | 0 | DIRECT |
Ribosomal protein L10-like | 0 | DIRECT |
E2F dimerization segment | 0 | DIRECT |
Biotin dependent carboxylase carboxyltransferase domain | 0 | DIRECT |
WrbA-like | 0 | DIRECT |
N-type ATP pyrophosphatases | 0 | DIRECT |
Head domain of nucleotide exchange factor GrpE | 0 | DIRECT |
Phosphoglucomutase, first 3 domains | 0 | DIRECT |
LDH N-terminal domain-like | 0 | DIRECT |
UDP-glucose/GDP-mannose dehydrogenase dimerisation domain | 0 | DIRECT |
Phosphoglucomutase, C-terminal domain | 0 | DIRECT |
PABC (PABP) domain | 0 | DIRECT |
Transducin (alpha subunit), insertion domain | 0 | DIRECT |
Prokaryotic ribosomal protein L17 | 0 | DIRECT |
Class-II DAHP synthetase | 0 | DIRECT |
monodomain cytochrome c | 0 | DIRECT |
D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | DIRECT |
Inorganic pyrophosphatase | 0 | DIRECT |
ADC synthase | 0 | DIRECT |
Ribosomal protein L37e | 0 | DIRECT |
Granulin repeat | 0 | DIRECT |
beta-Phosphoglucomutase-like | 0 | DIRECT |
Cu,Zn superoxide dismutase-like | 0 | DIRECT |
XPC-binding domain | 0 | DIRECT |
Lactate & malate dehydrogenases, C-terminal domain | 0 | DIRECT |
C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
Phosphoenolpyruvate carboxylase | 0 | DIRECT |
NHL repeat | 0 | DIRECT |
Succinyl-CoA synthetase domains | 0 | DIRECT |
Poly(A) polymerase, PAP, C-terminal domain | 0 | DIRECT |
Magnesium transport protein CorA, transmembrane region | 0 | DIRECT |
RibA-like | 0 | DIRECT |
Phosphoglycerate kinase | 0 | DIRECT |
N-terminal, heterodimerisation domain of RBP7 (RpoE) | 0 | DIRECT |
Ribosomal protein S15 | 0 | DIRECT |
Myf domain | 0 | DIRECT |
Canonical RBD | 0.00005758 | DIRECT |
G proteins | 0.0008379 | DIRECT |
Mitochondrial carrier | 0.01058 | INHERITED FROM: carpel |
FtsH protease domain-like | 0.04237 | INHERITED FROM: carpel |
Plant lipid-transfer and hydrophobic proteins | 1 | INHERITED FROM: style |
Terpenoid cyclase N-terminal domain | 1 | INHERITED FROM: stigma |
Terpenoid cyclase C-terminal domain | 1 | INHERITED FROM: stigma |
Homeodomain | 1 | INHERITED FROM: style |
HLH, helix-loop-helix DNA-binding domain | 1 | INHERITED FROM: portion of transmitting tissue |
Subtilases | 1 | INHERITED FROM: style |
B3 DNA binding domain | 1 | INHERITED FROM: ovary placenta || plant ovary |
SCOP term | FDR (all) | Annotation (direct or inherited) |
SH3-domain | 0 | Direct |
GHMP Kinase, N-terminal domain | 0 | Direct |
RelA/SpoT domain | 0 | Direct |
Tail specific protease, catalytic domain | 0 | Direct |
Smr domain | 0 | Direct |
PAPS reductase-like | 0 | Direct |
Phytochrome-specific domain | 0 | Direct |
Ran-binding domain | 0 | Direct |
ZZ domain | 0 | Direct |
Cytidylyltransferase | 0 | Direct |
Branched-chain alpha-keto acid dehydrogenase Pyr module | 0 | Direct |
Subtilase propeptides/inhibitors | 0 | Direct |
DNA repair glycosylase, 2 C-terminal domains | 0 | Direct |
AMPKBI-like | 0 | Direct |
NADPH-cytochrome p450 reductase-like | 0 | Direct |
GAF domain | 0 | Direct |
Acyl-ACP thioesterase-like | 0 | Direct |
Homoserine dehydrogenase-like | 0 | Direct |
HAT/Suf repeat | 0 | Direct |
La domain | 0 | Direct |
Coiled-coil domain of nucleotide exchange factor GrpE | 0 | Direct |
Tim10/DDP | 0 | Direct |
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | Direct |
Cytochrome p450 reductase N-terminal domain-like | 0 | Direct |
RhoGDI-like | 0 | Direct |
ATP sulfurylase catalytic domain | 0 | Direct |
Ribosomal protein L30p/L7e | 0 | Direct |
Ribosomal protein L39e | 0 | Direct |
Ribosomal protein L4 | 0 | Direct |
beta-N-acetylhexosaminidase catalytic domain | 0 | Direct |
Trunk domain of Sec23/24 | 0 | Direct |
(Glycosyl)asparaginase | 0 | Direct |
Ribosomal protein S2 | 0 | Direct |
Lipoxigenase N-terminal domain | 0 | Direct |
GroES | 0 | Direct |
Peptide methionine sulfoxide reductase | 0 | Direct |
NADPH-cytochrome p450 reductase FAD-binding domain-like | 0 | Direct |
Pentapeptide repeats | 0 | Direct |
RWD domain | 0 | Direct |
D-ribulose-5-phosphate 3-epimerase | 0 | Direct |
LEA14-like | 0 | Direct |
Clp protease, ClpP subunit | 0 | Direct |
Enolase | 0 | Direct |
Creatinase/aminopeptidase | 0 | Direct |
Cation efflux protein cytoplasmic domain-like | 0 | Direct |
PDI-like | 0 | Direct |
Glutamine synthetase catalytic domain | 0 | Direct |
BolA-like | 0 | Direct |
Glyoxalase II (hydroxyacylglutathione hydrolase) | 0 | Direct |
NSFL1 (p97 ATPase) cofactor p47, SEP domain | 0 | Direct |
Transcriptional coactivator PC4 C-terminal domain | 0 | Direct |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
Poly(A) polymerase, PAP, N-terminal domain | 0 | Direct |
Heme-dependent catalases | 0 | Direct |
Reductases | 0 | Direct |
Ribosomal protein L29 (L29p) | 0 | Direct |
ATP sulfurylase N-terminal domain | 0 | Direct |
Sec63 N-terminal domain | 0 | Direct |
Dihydrodipicolinate reductase-like | 0 | Direct |
Acyl-CoA binding protein | 0 | Direct |
Thiolase-related | 0 | Direct |
S-adenosylmethionine synthetase | 0 | Direct |
Ribosomal protein L14 | 0 | Direct |
Cdc48 N-terminal domain-like | 0 | Direct |
Leukotriene A4 hydrolase catalytic domain | 0 | Direct |
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | Direct |
FF domain | 0 | Direct |
Ring hydroxylating alpha subunit ISP domain | 0 | Direct |
5' nucleotidase-like | 0 | Direct |
Peptidyl-tRNA hydrolase-like | 0 | Direct |
Cryptochrome/photolyase FAD-binding domain | 0 | Direct |
Methionine aminopeptidase, insert domain | 0 | Direct |
Ribosomal protein L19 (L19e) | 0 | Direct |
PCI domain (PINT motif) | 0 | Direct |
Leukotriene A4 hydrolase N-terminal domain | 0 | Direct |
Plant transcriptional regulator PBF-2 | 0 | Direct |
Group II chaperonin (CCT, TRIC), intermediate domain | 0 | Direct |
Glycerol-3-phosphate dehydrogenase | 0 | Direct |
Plant stress-induced protein | 0 | Direct |
Ribosomal L11/L12e N-terminal domain | 0 | Direct |
Cdc48 domain 2-like | 0 | Direct |
Class I alpha-1;2-mannosidase, catalytic domain | 0 | Direct |
GABARAP-like | 0 | Direct |
Eps15 homology domain (EH domain) | 0 | Direct |
Gtf glycosyltransferase | 0 | Direct |
G domain-linked domain | 0 | Direct |
Casein kinase II beta subunit | 0 | Direct |
Profilin (actin-binding protein) | 0 | Direct |
Sigma2 domain of RNA polymerase sigma factors | 0 | Direct |
1,3-glucuronyltransferase | 0 | Direct |
Chromo barrel domain | 0 | Direct |
Poly(A) polymerase, PAP, middle domain | 0 | Direct |
Ribosomal protein L3 | 0 | Direct |
AlkB-like | 0 | Direct |
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | Direct |
RNB domain-like | 0 | Direct |
Ribosomal protein L10e | 0 | Direct |
Homocysteine S-methyltransferase | 0 | Direct |
PUA domain | 0 | Direct |
C-terminal autoproteolytic domain of nucleoporin nup98 | 0 | Direct |
Signal peptide-binding domain | 0 | Direct |
DNase I-like | 0 | Direct |
NadC N-terminal domain-like | 0 | Direct |
Pseudouridine synthase II TruB | 0 | Direct |
Choline kinase | 0 | Direct |
D-ribose-5-phosphate isomerase (RpiA), catalytic domain | 0 | Direct |
Ribosomal protein S6 | 0 | Direct |
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain | 0 | Direct |
ATP synthase (F1-ATPase), gamma subunit | 0 | Direct |
HesB-like domain | 0 | Direct |
LON domain-like | 0 | Direct |
Aminoacid dehydrogenases | 0 | Direct |
STAR domain | 0 | Direct |
Poly(ADP-ribose) polymerase, C-terminal domain | 0 | Direct |
Helical domain of Sec23/24 | 0 | Direct |
3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB | 0 | Direct |
Oxidoreductase molybdopterin-binding domain | 0 | Direct |
beta-sandwich domain of Sec23/24 | 0 | Direct |
YicI N-terminal domain-like | 0 | Direct |
Ribosomal protein L31e | 0 | Direct |
MYND zinc finger | 0 | Direct |
Thioredoxin-like 2Fe-2S ferredoxin | 0 | Direct |
Adenosine-5'phosphosulfate kinase (APS kinase) | 0 | Direct |
NadC C-terminal domain-like | 0 | Direct |
2Fe-2S ferredoxin-related | 0 | Direct |
Ribosomal protein L13 | 0 | Direct |
Universal stress protein-like | 0 | Direct |
Glyoxalase I (lactoylglutathione lyase) | 0 | Direct |
LIM domain | 0 | Direct |
Group II chaperonin (CCT, TRIC), ATPase domain | 0 | Direct |
CAT-like | 0 | Direct |
Plant lipoxigenases | 0 | Direct |
B56-like | 0 | Direct |
alpha-Amylases, C-terminal beta-sheet domain | 0 | Direct |
FAD-dependent thiol oxidase | 0 | Direct |
Glycosyl hydrolases family 32 C-terminal domain | 0 | Direct |
Calnexin/calreticulin | 0 | Direct |
HEAT repeat | 0 | Direct |
Preprotein translocase SecE subunit | 0 | Direct |
Biotinyl/lipoyl-carrier proteins and domains | 0 | Direct |
Group II chaperonin (CCT, TRIC), apical domain | 0 | Direct |
Ubiquitin carboxyl-terminal hydrolase UCH-L | 0 | Direct |
SerA intervening domain-like | 0 | Direct |
Rps19E-like | 0 | Direct |
Prolyl oligopeptidase, N-terminal domain | 0 | Direct |
UDP-glucose pyrophosphorylase | 0 | Direct |
Glutamine synthetase, N-terminal domain | 0 | Direct |
LeuD-like | 0 | Direct |
Shikimate kinase (AroK) | 0 | Direct |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
Ribosomal protein S27e | 0 | Direct |
Sec63 C-terminal domain-like | 0 | Direct |
Molybdenum-containing oxidoreductases-like dimerisation domain | 0 | Direct |
Aminomethyltransferase folate-binding domain | 0 | Direct |
FKBP immunophilin/proline isomerase | 0 | Direct |
Phosphofructokinase | 0 | Direct |
P-domain of calnexin/calreticulin | 0 | Direct |
Spermidine synthase | 0 | Direct |
RNase Z-like | 0 | Direct |
Rubredoxin | 0 | Direct |
GDI-like N domain | 0 | Direct |
rRNA adenine dimethylase-like | 0 | Direct |
Receiver domain of the ethylene receptor | 0 | Direct |
IPP isomerase-like | 0 | Direct |
6-phosphogluconate dehydrogenase-like, N-terminal domain | 0 | Direct |
beta-carbonic anhydrase, cab | 0 | Direct |
Smc hinge domain | 0 | Direct |
Hypothetical protein At2g34160 | 0 | Direct |
Prolyl oligopeptidase, C-terminal domain | 0 | Direct |
Starch-binding domain | 0 | Direct |
Folylpolyglutamate synthetase | 0 | Direct |
Ribosomal protein S13 | 0 | Direct |
Nitrite and sulphite reductase 4Fe-4S domain-like | 0 | Direct |
EDF1-like | 0 | Direct |
Cystatins | 0 | Direct |
AMPK-beta glycogen binding domain-like | 0 | Direct |
BAR domain | 0 | Direct |
L23p | 0 | Direct |
Alpha subunit of glutamate synthase, C-terminal domain | 0 | Direct |
RraA-like | 0 | Direct |
Clc chloride channel | 0 | Direct |
LysM domain | 0 | Direct |
Galactosyltransferase LgtC | 0 | Direct |
Sigma4 domain | 0 | Direct |
Zn-finger domain of Sec23/24 | 0 | Direct |
gamma-carbonic anhydrase-like | 0 | Direct |
Hypothetical protein HI1317 | 0 | Direct |
R3H domain | 0 | Direct |
Hypothetical protein YjiA, C-terminal domain | 0 | Direct |
Succinyl-CoA synthetase, beta-chain, N-terminal domain | 0 | Direct |
Aconitase iron-sulfur domain | 0 | Direct |
PdxS-like | 0 | Direct |
Allosteric chorismate mutase | 0 | Direct |
Sedlin (SEDL) | 0 | Direct |
MIF-related | 0 | Direct |
glucose-1-phosphate thymidylyltransferase | 0 | Direct |
BphP N-terminal domain-like | 0 | Direct |
CoA-binding domain | 0 | Direct |
Anti-sigma factor antagonist SpoIIaa | 0 | Direct |
eIF1-like | 0 | Direct |
GlmU C-terminal domain-like | 0 | Direct |
Ribosomal protein L10-like | 0 | Direct |
E2F dimerization segment | 0 | Direct |
Biotin dependent carboxylase carboxyltransferase domain | 0 | Direct |
WrbA-like | 0 | Direct |
N-type ATP pyrophosphatases | 0 | Direct |
Head domain of nucleotide exchange factor GrpE | 0 | Direct |
Phosphoglucomutase, first 3 domains | 0 | Direct |
LDH N-terminal domain-like | 0 | Direct |
UDP-glucose/GDP-mannose dehydrogenase dimerisation domain | 0 | Direct |
Phosphoglucomutase, C-terminal domain | 0 | Direct |
PABC (PABP) domain | 0 | Direct |
Transducin (alpha subunit), insertion domain | 0 | Direct |
Prokaryotic ribosomal protein L17 | 0 | Direct |
Class-II DAHP synthetase | 0 | Direct |
monodomain cytochrome c | 0 | Direct |
D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | Direct |
Inorganic pyrophosphatase | 0 | Direct |
ADC synthase | 0 | Direct |
Ribosomal protein L37e | 0 | Direct |
Granulin repeat | 0 | Direct |
beta-Phosphoglucomutase-like | 0 | Direct |
Cu,Zn superoxide dismutase-like | 0 | Direct |
XPC-binding domain | 0 | Direct |
Lactate & malate dehydrogenases, C-terminal domain | 0 | Direct |
C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
Phosphoenolpyruvate carboxylase | 0 | Direct |
NHL repeat | 0 | Direct |
Succinyl-CoA synthetase domains | 0 | Direct |
Poly(A) polymerase, PAP, C-terminal domain | 0 | Direct |
Magnesium transport protein CorA, transmembrane region | 0 | Direct |
RibA-like | 0 | Direct |
Phosphoglycerate kinase | 0 | Direct |
N-terminal, heterodimerisation domain of RBP7 (RpoE) | 0 | Direct |
Ribosomal protein S15 | 0 | Direct |
Myf domain | 0 | Direct |
Canonical RBD | 0.00005758 | Direct |
G proteins | 0.0008379 | Direct |
Mitochondrial carrier | 0.01058 | Inherited |
FtsH protease domain-like | 0.04237 | Inherited |
Plant lipid-transfer and hydrophobic proteins | 1 | Inherited |
Terpenoid cyclase N-terminal domain | 1 | Inherited |
Terpenoid cyclase C-terminal domain | 1 | Inherited |
Homeodomain | 1 | Inherited |
HLH, helix-loop-helix DNA-binding domain | 1 | Inherited |
Subtilases | 1 | Inherited |
B3 DNA binding domain | 1 | Inherited |
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
 |
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
Supra-domains annotated to this AP term (SPAP level: Least Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
Homocysteine S-methyltransferase | 0 | DIRECT |
Ribosomal protein L31e | 0 | DIRECT |
Ribosomal protein L13 | 0 | DIRECT |
MOSC N-terminal domain-like | 0 | DIRECT |
Profilin (actin-binding protein) | 0 | DIRECT |
Sigma2 domain of RNA polymerase sigma factors | 0 | DIRECT |
Ribosomal protein L30p/L7e | 0 | DIRECT |
FKBP-like | 0 | DIRECT |
Ribosomal protein L14 | 0 | DIRECT |
Alpha subunit of glutamate synthase, C-terminal domain | 0 | DIRECT |
Seven-hairpin glycosidases | 0 | DIRECT |
Ribosomal protein L39e | 0 | DIRECT |
Succinyl-CoA synthetase domains | 0 | DIRECT |
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | DIRECT |
Acyl-CoA binding protein | 0 | DIRECT |
ATP synthase (F1-ATPase), gamma subunit | 0 | DIRECT |
Cdc48 domain 2-like | 0 | DIRECT |
MurD-like peptide ligases, peptide-binding domain | 0 | DIRECT |
Phosphoglucomutase, first 3 domains | 0 | DIRECT |
Zn-finger domain of Sec23/24 | 0 | DIRECT |
Ribosomal protein L29 (L29p) | 0 | DIRECT |
Ribosomal proteins S24e, L23 and L15e | 0 | DIRECT |
ADC synthase | 0 | DIRECT |
AMPKBI-like | 0 | DIRECT |
FF domain | 0 | DIRECT |
Phosphoglucomutase, C-terminal domain | 0 | DIRECT |
Ligand-binding domain in the NO signalling and Golgi transport | 0 | DIRECT |
L9 N-domain-like | 0 | DIRECT |
Signal peptide-binding domain | 0 | DIRECT |
eIF1-like | 0 | DIRECT |
N-terminal, heterodimerisation domain of RBP7 (RpoE) | 0 | DIRECT |
Tetrahydrobiopterin biosynthesis enzymes-like | 0 | DIRECT |
Serine metabolism enzymes domain | 0 | DIRECT |
LDH C-terminal domain-like | 0 | DIRECT |
S13-like H2TH domain | 0 | DIRECT |
Hypothetical protein YjiA, C-terminal domain | 0 | DIRECT |
Inorganic pyrophosphatase | 0 | DIRECT |
NSFL1 (p97 ATPase) cofactor p47, SEP domain | 0 | DIRECT |
C-terminal autoproteolytic domain of nucleoporin nup98 | 0 | DIRECT |
Electron transport accessory proteins | 0 | DIRECT |
Peptidase/esterase 'gauge' domain | 0 | DIRECT |
P-domain of calnexin/calreticulin | 0 | DIRECT |
FAD-dependent thiol oxidase | 0 | DIRECT |
Coiled-coil domain of nucleotide exchange factor GrpE | 0 | DIRECT |
Preprotein translocase SecE subunit | 0 | DIRECT |
Prokaryotic ribosomal protein L17 | 0 | DIRECT |
Nicotinate/Quinolinate PRTase C-terminal domain-like | 0 | DIRECT |
NHL repeat | 0 | DIRECT |
ssDNA-binding transcriptional regulator domain | 0 | DIRECT |
E2F-DP heterodimerization region | 0 | DIRECT |
N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0 | DIRECT |
Lipocalins | 0 | DIRECT |
Ribosomal protein S6 | 0 | DIRECT |
Phosphoglycerate kinase | 0 | DIRECT |
Phosphofructokinase | 0 | DIRECT |
Folate-binding domain | 0 | DIRECT |
Casein kinase II beta subunit | 0 | DIRECT |
Chorismate mutase II | 0 | DIRECT |
BolA-like | 0 | DIRECT |
CYTH-like phosphatases | 0 | DIRECT |
AlbA-like | 0 | DIRECT |
GHMP Kinase, C-terminal domain | 0 | DIRECT |
Ribosomal protein L16p/L10e | 0 | DIRECT |
Nitrite and sulphite reductase 4Fe-4S domain-like | 0 | DIRECT |
LysM domain | 0 | DIRECT |
LeuD/IlvD-like | 0 | DIRECT |
PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | DIRECT |
tRNA-binding arm | 0 | DIRECT |
Cytochrome c | 0 | DIRECT |
Glutamine synthetase/guanido kinase | 0 | DIRECT |
Putative isomerase YbhE | 0 | DIRECT |
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | DIRECT |
Oxidoreductase molybdopterin-binding domain | 0 | DIRECT |
Globin-like | 0 | DIRECT |
Dimeric alpha+beta barrel | 0 | DIRECT |
Flavoproteins | 0 | DIRECT |
D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | DIRECT |
Tim10-like | 0 | DIRECT |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
beta-carbonic anhydrase, cab | 0 | DIRECT |
Leukotriene A4 hydrolase N-terminal domain | 0 | DIRECT |
Helical domain of Sec23/24 | 0 | DIRECT |
Magnesium transport protein CorA, transmembrane region | 0 | DIRECT |
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | DIRECT |
Cryptochrome/photolyase FAD-binding domain | 0 | DIRECT |
SH3-domain | 0 | DIRECT |
Creatinase/prolidase N-terminal domain | 0 | DIRECT |
Tautomerase/MIF | 0 | DIRECT |
Pentapeptide repeat-like | 0 | DIRECT |
Ribosomal protein L4 | 0 | DIRECT |
YrdC/RibB | 0 | DIRECT |
GlnB-like | 0 | DIRECT |
MurD-like peptide ligases, catalytic domain | 0 | DIRECT |
R3H domain | 0 | DIRECT |
Glutamine synthetase, N-terminal domain | 0 | DIRECT |
alpha-helical ferredoxin | 0 | DIRECT |
SMR domain-like | 0 | DIRECT |
XPC-binding domain | 0 | DIRECT |
Aconitase iron-sulfur domain | 0 | DIRECT |
TATA-box binding protein-like | 0 | DIRECT |
Ribosomal protein S2 | 0 | DIRECT |
Ribosomal protein L19 (L19e) | 0 | DIRECT |
S-adenosylmethionine synthetase | 0 | DIRECT |
Lipoxigenase | 0 | DIRECT |
Head domain of nucleotide exchange factor GrpE | 0 | DIRECT |
Heme-dependent catalase-like | 0 | DIRECT |
beta-N-acetylhexosaminidase-like domain | 0 | DIRECT |
lambda repressor-like DNA-binding domains | 0 | DIRECT |
Clc chloride channel | 0 | DIRECT |
6-phosphogluconate dehydrogenase C-terminal domain-like | 0 | DIRECT |
Nicotinate/Quinolinate PRTase N-terminal domain-like | 0 | DIRECT |
DNA repair protein MutS, domain II | 0 | DIRECT |
Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | DIRECT |
Single hybrid motif | 0 | DIRECT |
RraA-like | 0 | DIRECT |
Creatinase/aminopeptidase | 0 | DIRECT |
PABC (PABP) domain | 0 | DIRECT |
C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
Cu,Zn superoxide dismutase-like | 0 | DIRECT |
Peptidyl-tRNA hydrolase-like | 0 | DIRECT |
RibA-like | 0 | DIRECT |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
Ribosomal L11/L12e N-terminal domain | 0 | DIRECT |
Chelatase | 0 | DIRECT |
Granulin repeat | 0 | DIRECT |
HesB-like domain | 0 | DIRECT |
Ribosomal protein L10-like | 0 | DIRECT |
Expressed protein At2g23090/F21P24.15 | 0 | DIRECT |
Peptide methionine sulfoxide reductase | 0 | DIRECT |
ADC-like | 0 | DIRECT |
Glycerol-3-phosphate (1)-acyltransferase | 0 | DIRECT |
Transducin (alpha subunit), insertion domain | 0 | DIRECT |
RNA-binding domain, RBD | 0.000114 | DIRECT |
NAD(P)-binding Rossmann-fold domains | 0.001223 | INHERITED FROM: carpel |
Nucleotidylyl transferase | 0.002915 | INHERITED FROM: carpel |
Mitochondrial carrier | 0.009466 | INHERITED FROM: carpel |
Thioredoxin-like | 0.0103 | INHERITED FROM: carpel |
Metallo-hydrolase/oxidoreductase | 0.01555 | INHERITED FROM: carpel |
ClpP/crotonase | 0.01665 | INHERITED FROM: carpel |
GroEL apical domain-like | 0.02351 | INHERITED FROM: carpel |
FtsH protease domain-like | 0.03542 | INHERITED FROM: carpel |
Homeodomain-like | 1 | INHERITED FROM: style || ovary replum |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 1 | INHERITED FROM: style |
DNA-binding pseudobarrel domain | 1 | INHERITED FROM: plant ovary || ovary placenta |
HLH, helix-loop-helix DNA-binding domain | 1 | INHERITED FROM: portion of transmitting tissue || style |
Terpenoid synthases | 1 | INHERITED FROM: stigma |
Terpenoid cyclases/Protein prenyltransferases | 1 | INHERITED FROM: stigma |
Subtilisin-like | 1 | INHERITED FROM: style |
Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
Homocysteine S-methyltransferase | 0 | Direct |
Ribosomal protein L31e | 0 | Direct |
Ribosomal protein L13 | 0 | Direct |
MOSC N-terminal domain-like | 0 | Direct |
Profilin (actin-binding protein) | 0 | Direct |
Sigma2 domain of RNA polymerase sigma factors | 0 | Direct |
Ribosomal protein L30p/L7e | 0 | Direct |
FKBP-like | 0 | Direct |
Ribosomal protein L14 | 0 | Direct |
Alpha subunit of glutamate synthase, C-terminal domain | 0 | Direct |
Seven-hairpin glycosidases | 0 | Direct |
Ribosomal protein L39e | 0 | Direct |
Succinyl-CoA synthetase domains | 0 | Direct |
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | Direct |
Acyl-CoA binding protein | 0 | Direct |
ATP synthase (F1-ATPase), gamma subunit | 0 | Direct |
Cdc48 domain 2-like | 0 | Direct |
MurD-like peptide ligases, peptide-binding domain | 0 | Direct |
Phosphoglucomutase, first 3 domains | 0 | Direct |
Zn-finger domain of Sec23/24 | 0 | Direct |
Ribosomal protein L29 (L29p) | 0 | Direct |
Ribosomal proteins S24e, L23 and L15e | 0 | Direct |
ADC synthase | 0 | Direct |
AMPKBI-like | 0 | Direct |
FF domain | 0 | Direct |
Phosphoglucomutase, C-terminal domain | 0 | Direct |
Ligand-binding domain in the NO signalling and Golgi transport | 0 | Direct |
L9 N-domain-like | 0 | Direct |
Signal peptide-binding domain | 0 | Direct |
eIF1-like | 0 | Direct |
N-terminal, heterodimerisation domain of RBP7 (RpoE) | 0 | Direct |
Tetrahydrobiopterin biosynthesis enzymes-like | 0 | Direct |
Serine metabolism enzymes domain | 0 | Direct |
LDH C-terminal domain-like | 0 | Direct |
S13-like H2TH domain | 0 | Direct |
Hypothetical protein YjiA, C-terminal domain | 0 | Direct |
Inorganic pyrophosphatase | 0 | Direct |
NSFL1 (p97 ATPase) cofactor p47, SEP domain | 0 | Direct |
C-terminal autoproteolytic domain of nucleoporin nup98 | 0 | Direct |
Electron transport accessory proteins | 0 | Direct |
Peptidase/esterase 'gauge' domain | 0 | Direct |
P-domain of calnexin/calreticulin | 0 | Direct |
FAD-dependent thiol oxidase | 0 | Direct |
Coiled-coil domain of nucleotide exchange factor GrpE | 0 | Direct |
Preprotein translocase SecE subunit | 0 | Direct |
Prokaryotic ribosomal protein L17 | 0 | Direct |
Nicotinate/Quinolinate PRTase C-terminal domain-like | 0 | Direct |
NHL repeat | 0 | Direct |
ssDNA-binding transcriptional regulator domain | 0 | Direct |
E2F-DP heterodimerization region | 0 | Direct |
N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0 | Direct |
Lipocalins | 0 | Direct |
Ribosomal protein S6 | 0 | Direct |
Phosphoglycerate kinase | 0 | Direct |
Phosphofructokinase | 0 | Direct |
Folate-binding domain | 0 | Direct |
Casein kinase II beta subunit | 0 | Direct |
Chorismate mutase II | 0 | Direct |
BolA-like | 0 | Direct |
CYTH-like phosphatases | 0 | Direct |
AlbA-like | 0 | Direct |
GHMP Kinase, C-terminal domain | 0 | Direct |
Ribosomal protein L16p/L10e | 0 | Direct |
Nitrite and sulphite reductase 4Fe-4S domain-like | 0 | Direct |
LysM domain | 0 | Direct |
LeuD/IlvD-like | 0 | Direct |
PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | Direct |
tRNA-binding arm | 0 | Direct |
Cytochrome c | 0 | Direct |
Glutamine synthetase/guanido kinase | 0 | Direct |
Putative isomerase YbhE | 0 | Direct |
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | Direct |
Oxidoreductase molybdopterin-binding domain | 0 | Direct |
Globin-like | 0 | Direct |
Dimeric alpha+beta barrel | 0 | Direct |
Flavoproteins | 0 | Direct |
D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | Direct |
Tim10-like | 0 | Direct |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
beta-carbonic anhydrase, cab | 0 | Direct |
Leukotriene A4 hydrolase N-terminal domain | 0 | Direct |
Helical domain of Sec23/24 | 0 | Direct |
Magnesium transport protein CorA, transmembrane region | 0 | Direct |
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | Direct |
Cryptochrome/photolyase FAD-binding domain | 0 | Direct |
SH3-domain | 0 | Direct |
Creatinase/prolidase N-terminal domain | 0 | Direct |
Tautomerase/MIF | 0 | Direct |
Pentapeptide repeat-like | 0 | Direct |
Ribosomal protein L4 | 0 | Direct |
YrdC/RibB | 0 | Direct |
GlnB-like | 0 | Direct |
MurD-like peptide ligases, catalytic domain | 0 | Direct |
R3H domain | 0 | Direct |
Glutamine synthetase, N-terminal domain | 0 | Direct |
alpha-helical ferredoxin | 0 | Direct |
SMR domain-like | 0 | Direct |
XPC-binding domain | 0 | Direct |
Aconitase iron-sulfur domain | 0 | Direct |
TATA-box binding protein-like | 0 | Direct |
Ribosomal protein S2 | 0 | Direct |
Ribosomal protein L19 (L19e) | 0 | Direct |
S-adenosylmethionine synthetase | 0 | Direct |
Lipoxigenase | 0 | Direct |
Head domain of nucleotide exchange factor GrpE | 0 | Direct |
Heme-dependent catalase-like | 0 | Direct |
beta-N-acetylhexosaminidase-like domain | 0 | Direct |
lambda repressor-like DNA-binding domains | 0 | Direct |
Clc chloride channel | 0 | Direct |
6-phosphogluconate dehydrogenase C-terminal domain-like | 0 | Direct |
Nicotinate/Quinolinate PRTase N-terminal domain-like | 0 | Direct |
DNA repair protein MutS, domain II | 0 | Direct |
Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | Direct |
Single hybrid motif | 0 | Direct |
RraA-like | 0 | Direct |
Creatinase/aminopeptidase | 0 | Direct |
PABC (PABP) domain | 0 | Direct |
C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
Cu,Zn superoxide dismutase-like | 0 | Direct |
Peptidyl-tRNA hydrolase-like | 0 | Direct |
RibA-like | 0 | Direct |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
Ribosomal L11/L12e N-terminal domain | 0 | Direct |
Chelatase | 0 | Direct |
Granulin repeat | 0 | Direct |
HesB-like domain | 0 | Direct |
Ribosomal protein L10-like | 0 | Direct |
Expressed protein At2g23090/F21P24.15 | 0 | Direct |
Peptide methionine sulfoxide reductase | 0 | Direct |
ADC-like | 0 | Direct |
Glycerol-3-phosphate (1)-acyltransferase | 0 | Direct |
Transducin (alpha subunit), insertion domain | 0 | Direct |
RNA-binding domain, RBD | 0.000114 | Direct |
NAD(P)-binding Rossmann-fold domains | 0.001223 | Inherited |
Nucleotidylyl transferase | 0.002915 | Inherited |
Mitochondrial carrier | 0.009466 | Inherited |
Thioredoxin-like | 0.0103 | Inherited |
Metallo-hydrolase/oxidoreductase | 0.01555 | Inherited |
ClpP/crotonase | 0.01665 | Inherited |
GroEL apical domain-like | 0.02351 | Inherited |
FtsH protease domain-like | 0.03542 | Inherited |
Homeodomain-like | 1 | Inherited |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 1 | Inherited |
DNA-binding pseudobarrel domain | 1 | Inherited |
HLH, helix-loop-helix DNA-binding domain | 1 | Inherited |
Terpenoid synthases | 1 | Inherited |
Terpenoid cyclases/Protein prenyltransferases | 1 | Inherited |
Subtilisin-like | 1 | Inherited |
(show details)
Supra-domains annotated to this AP term (SPAP level: Least Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
55821,142695 55821 - YrdC/RibB 142695 - RibA-like | 0 | DIRECT |
55781,55781 55781 - GAF domain-like 55781 - GAF domain-like | 0 | DIRECT |
158702,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
50022,55961 50022 - ISP domain 55961 - Bet v1-like | 0 | DIRECT |
54001,57277 54001 - Cysteine proteinases 57277 - Granulin repeat | 0 | DIRECT |
48403,52540 48403 - Ankyrin repeat 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
100950,75445 100950 - NagB/RpiA/CoA transferase-like 75445 - D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | DIRECT |
53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains | 0 | DIRECT |
47005,52777 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases | 0 | DIRECT |
52540,52058 52540 - P-loop containing nucleoside triphosphate hydrolases 52058 - L domain-like | 0 | DIRECT |
81631,55003 81631 - PAP/OAS1 substrate-binding domain 55003 - PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | DIRECT |
117916,117916 117916 - Fe-S cluster assembly (FSCA) domain-like 117916 - Fe-S cluster assembly (FSCA) domain-like | 0 | DIRECT |
55920,46785 55920 - Creatinase/aminopeptidase 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
57863,48403 57863 - ArfGap/RecO-like zinc finger 48403 - Ankyrin repeat | 0 | DIRECT |
49899,63887 49899 - Concanavalin A-like lectins/glucanases 63887 - P-domain of calnexin/calreticulin | 0 | DIRECT |
50692,54585 50692 - ADC-like 54585 - Cdc48 domain 2-like | 0 | DIRECT |
101908,56219 101908 - Putative isomerase YbhE 56219 - DNase I-like | 0 | DIRECT |
88798,50249 88798 - N-terminal, heterodimerisation domain of RBP7 (RpoE) 50249 - Nucleic acid-binding proteins | 0 | DIRECT |
50249,55681 50249 - Nucleic acid-binding proteins 55681 - Class II aaRS and biotin synthetases | 0 | DIRECT |
51735,56327 51735 - NAD(P)-binding Rossmann-fold domains 56327 - LDH C-terminal domain-like | 0 | DIRECT |
54368,55931 54368 - Glutamine synthetase, N-terminal domain 55931 - Glutamine synthetase/guanido kinase | 0 | DIRECT |
54980,54980 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like | 0 | DIRECT |
53732,52016 53732 - Aconitase iron-sulfur domain 52016 - LeuD/IlvD-like | 0 | DIRECT |
54585,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
54747,46906 54747 - Ribosomal L11/L12e N-terminal domain 46906 - Ribosomal protein L11, C-terminal domain | 0 | DIRECT |
82171,53474 82171 - DPP6 N-terminal domain-like 53474 - alpha/beta-Hydrolases | 0 | DIRECT |
56059,52210 56059 - Glutathione synthetase ATP-binding domain-like 52210 - Succinyl-CoA synthetase domains | 0 | DIRECT |
55785,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like | 0 | DIRECT |
55781,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
54236,63491 54236 - Ubiquitin-like 63491 - BAG domain | 0 | DIRECT |
81698,81698 81698 - FF domain 81698 - FF domain | 0 | DIRECT |
56524,81296 56524 - Oxidoreductase molybdopterin-binding domain 81296 - E set domains | 0 | DIRECT |
55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase | 0 | DIRECT |
57850,54928 57850 - RING/U-box 54928 - RNA-binding domain, RBD | 0 | DIRECT |
51045,51045 51045 - WW domain 51045 - WW domain | 0 | DIRECT |
63737,55486 63737 - Leukotriene A4 hydrolase N-terminal domain 55486 - Metalloproteases ("zincins"), catalytic domain | 0 | DIRECT |
52540,52317 52540 - P-loop containing nucleoside triphosphate hydrolases 52317 - Class I glutamine amidotransferase-like | 0 | DIRECT |
46785,144074 46785 - "Winged helix" DNA-binding domain 144074 - E2F-DP heterodimerization region | 0 | DIRECT |
53300,81995 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 | 0 | DIRECT |
51735,48179 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like | 0 | DIRECT |
55874,52172 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like | 0 | DIRECT |
56219,56219 56219 - DNase I-like 56219 - DNase I-like | 0 | DIRECT |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
52540,90002 52540 - P-loop containing nucleoside triphosphate hydrolases 90002 - Hypothetical protein YjiA, C-terminal domain | 0 | DIRECT |
81383,54518 81383 - F-box domain 54518 - Tubby C-terminal domain-like | 0 | DIRECT |
52540,47446 52540 - P-loop containing nucleoside triphosphate hydrolases 47446 - Signal peptide-binding domain | 0 | DIRECT |
103657,50729 103657 - BAR/IMD domain-like 50729 - PH domain-like | 0 | DIRECT |
81995,81811 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | DIRECT |
52402,52833 52402 - Adenine nucleotide alpha hydrolases-like 52833 - Thioredoxin-like | 0 | DIRECT |
81923,52540 81923 - Double Clp-N motif 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
82919,53300 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like | 0 | DIRECT |
81995,82919 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24 | 0 | DIRECT |
81811,82754 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
50156,52096 50156 - PDZ domain-like 52096 - ClpP/crotonase | 0 | DIRECT |
52374,47323 52374 - Nucleotidylyl transferase 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0 | DIRECT |
64356,49447 64356 - SNARE-like 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | DIRECT |
46785,158702 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like | 0 | DIRECT |
53738,55957 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain | 0 | DIRECT |
50993,53474 50993 - Peptidase/esterase 'gauge' domain 53474 - alpha/beta-Hydrolases | 0 | DIRECT |
102848,54236 102848 - NSFL1 (p97 ATPase) cofactor p47, SEP domain 54236 - Ubiquitin-like | 0 | DIRECT |
50729,55961 50729 - PH domain-like 55961 - Bet v1-like | 0 | DIRECT |
101238,46934 101238 - XPC-binding domain 46934 - UBA-like | 0 | DIRECT |
53850,55021 53850 - Periplasmic binding protein-like II 55021 - ACT-like | 0 | DIRECT |
52425,48173 52425 - Cryptochrome/photolyase, N-terminal domain 48173 - Cryptochrome/photolyase FAD-binding domain | 0 | DIRECT |
51230,47005 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | DIRECT |
52540,48340 52540 - P-loop containing nucleoside triphosphate hydrolases 48340 - Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | DIRECT |
54534,54534 54534 - FKBP-like 54534 - FKBP-like | 0 | DIRECT |
52743,52025 52743 - Subtilisin-like 52025 - PA domain | 0 | DIRECT |
50249,57756 50249 - Nucleic acid-binding proteins 57756 - Retrovirus zinc finger-like domains | 0 | DIRECT |
58014,51064 58014 - Coiled-coil domain of nucleotide exchange factor GrpE 51064 - Head domain of nucleotide exchange factor GrpE | 0 | DIRECT |
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 0 | DIRECT |
53300,57850 53300 - vWA-like 57850 - RING/U-box | 0 | DIRECT |
46689,51905 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain | 0 | DIRECT |
55021,56112 55021 - ACT-like 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
158702,81296 158702 - Sec63 N-terminal domain-like 81296 - E set domains | 0 | DIRECT |
57850,46689 57850 - RING/U-box 46689 - Homeodomain-like | 0 | DIRECT |
141673,50800 141673 - MOSC N-terminal domain-like 50800 - PK beta-barrel domain-like | 0 | DIRECT |
158639,63748 158639 - ENT-like 63748 - Tudor/PWWP/MBT | 0 | DIRECT |
53448,51161 53448 - Nucleotide-diphospho-sugar transferases 51161 - Trimeric LpxA-like enzymes | 0 | DIRECT |
101690,69065 101690 - PAZ domain 69065 - RNase III domain-like | 0 | DIRECT |
109604,81301 109604 - HD-domain/PDEase-like 81301 - Nucleotidyltransferase | 0 | DIRECT |
51735,143548 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain | 0 | DIRECT |
54909,54909 54909 - Dimeric alpha+beta barrel 54909 - Dimeric alpha+beta barrel | 0 | DIRECT |
52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0 | DIRECT |
47473,103506 47473 - EF-hand 103506 - Mitochondrial carrier | 0 | DIRECT |
54211,55060 54211 - Ribosomal protein S5 domain 2-like 55060 - GHMP Kinase, C-terminal domain | 0 | DIRECT |
88697,52374 88697 - PUA domain-like 52374 - Nucleotidylyl transferase | 0 | DIRECT |
88659,88659 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | DIRECT |
49723,48484 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain) 48484 - Lipoxigenase | 0 | DIRECT |
55545,51445 55545 - beta-N-acetylhexosaminidase-like domain 51445 - (Trans)glycosidases | 0 | DIRECT |
56112,48371 56112 - Protein kinase-like (PK-like) 48371 - ARM repeat | 0 | DIRECT |
50729,57863 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger | 0 | DIRECT |
54534,48452 54534 - FKBP-like 48452 - TPR-like | 0 | DIRECT |
54160,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
48403,57850 48403 - Ankyrin repeat 57850 - RING/U-box | 0 | DIRECT |
48179,52413 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | DIRECT |
52540,48403 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat | 0 | DIRECT |
81296,51445 81296 - E set domains 51445 - (Trans)glycosidases | 0 | DIRECT |
88946,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | DIRECT |
55781,47384 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase | 0 | DIRECT |
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
47661,58038 47661 - t-snare proteins 58038 - SNARE fusion complex | 0 | DIRECT |
46785,54928 46785 - "Winged helix" DNA-binding domain 54928 - RNA-binding domain, RBD | 0 | DIRECT |
52172,52172 52172 - CheY-like 52172 - CheY-like | 0 | DIRECT |
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
54160,54160 54160 - Chromo domain-like 54160 - Chromo domain-like | 0 | DIRECT |
81296,52540 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
143548,55021 143548 - Serine metabolism enzymes domain 55021 - ACT-like | 0 | DIRECT |
52025,57850 52025 - PA domain 57850 - RING/U-box | 0 | DIRECT |
48239,48576 48239 - Terpenoid cyclases/Protein prenyltransferases 48576 - Terpenoid synthases | 1 | INHERITED FROM: stigma |
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
55821,142695 55821 - YrdC/RibB 142695 - RibA-like | 0 | Direct |
55781,55781 55781 - GAF domain-like 55781 - GAF domain-like | 0 | Direct |
158702,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
50022,55961 50022 - ISP domain 55961 - Bet v1-like | 0 | Direct |
54001,57277 54001 - Cysteine proteinases 57277 - Granulin repeat | 0 | Direct |
48403,52540 48403 - Ankyrin repeat 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
100950,75445 100950 - NagB/RpiA/CoA transferase-like 75445 - D-ribose-5-phosphate isomerase (RpiA), lid domain | 0 | Direct |
53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains | 0 | Direct |
47005,52777 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases | 0 | Direct |
52540,52058 52540 - P-loop containing nucleoside triphosphate hydrolases 52058 - L domain-like | 0 | Direct |
81631,55003 81631 - PAP/OAS1 substrate-binding domain 55003 - PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | Direct |
117916,117916 117916 - Fe-S cluster assembly (FSCA) domain-like 117916 - Fe-S cluster assembly (FSCA) domain-like | 0 | Direct |
55920,46785 55920 - Creatinase/aminopeptidase 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
57863,48403 57863 - ArfGap/RecO-like zinc finger 48403 - Ankyrin repeat | 0 | Direct |
49899,63887 49899 - Concanavalin A-like lectins/glucanases 63887 - P-domain of calnexin/calreticulin | 0 | Direct |
50692,54585 50692 - ADC-like 54585 - Cdc48 domain 2-like | 0 | Direct |
101908,56219 101908 - Putative isomerase YbhE 56219 - DNase I-like | 0 | Direct |
88798,50249 88798 - N-terminal, heterodimerisation domain of RBP7 (RpoE) 50249 - Nucleic acid-binding proteins | 0 | Direct |
50249,55681 50249 - Nucleic acid-binding proteins 55681 - Class II aaRS and biotin synthetases | 0 | Direct |
51735,56327 51735 - NAD(P)-binding Rossmann-fold domains 56327 - LDH C-terminal domain-like | 0 | Direct |
54368,55931 54368 - Glutamine synthetase, N-terminal domain 55931 - Glutamine synthetase/guanido kinase | 0 | Direct |
54980,54980 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like | 0 | Direct |
53732,52016 53732 - Aconitase iron-sulfur domain 52016 - LeuD/IlvD-like | 0 | Direct |
54585,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
54747,46906 54747 - Ribosomal L11/L12e N-terminal domain 46906 - Ribosomal protein L11, C-terminal domain | 0 | Direct |
82171,53474 82171 - DPP6 N-terminal domain-like 53474 - alpha/beta-Hydrolases | 0 | Direct |
56059,52210 56059 - Glutathione synthetase ATP-binding domain-like 52210 - Succinyl-CoA synthetase domains | 0 | Direct |
55785,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like | 0 | Direct |
55781,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
54236,63491 54236 - Ubiquitin-like 63491 - BAG domain | 0 | Direct |
81698,81698 81698 - FF domain 81698 - FF domain | 0 | Direct |
56524,81296 56524 - Oxidoreductase molybdopterin-binding domain 81296 - E set domains | 0 | Direct |
55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase | 0 | Direct |
57850,54928 57850 - RING/U-box 54928 - RNA-binding domain, RBD | 0 | Direct |
51045,51045 51045 - WW domain 51045 - WW domain | 0 | Direct |
63737,55486 63737 - Leukotriene A4 hydrolase N-terminal domain 55486 - Metalloproteases ("zincins"), catalytic domain | 0 | Direct |
52540,52317 52540 - P-loop containing nucleoside triphosphate hydrolases 52317 - Class I glutamine amidotransferase-like | 0 | Direct |
46785,144074 46785 - "Winged helix" DNA-binding domain 144074 - E2F-DP heterodimerization region | 0 | Direct |
53300,81995 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 | 0 | Direct |
51735,48179 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like | 0 | Direct |
55874,52172 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like | 0 | Direct |
56219,56219 56219 - DNase I-like 56219 - DNase I-like | 0 | Direct |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
52540,90002 52540 - P-loop containing nucleoside triphosphate hydrolases 90002 - Hypothetical protein YjiA, C-terminal domain | 0 | Direct |
81383,54518 81383 - F-box domain 54518 - Tubby C-terminal domain-like | 0 | Direct |
52540,47446 52540 - P-loop containing nucleoside triphosphate hydrolases 47446 - Signal peptide-binding domain | 0 | Direct |
103657,50729 103657 - BAR/IMD domain-like 50729 - PH domain-like | 0 | Direct |
81995,81811 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | Direct |
52402,52833 52402 - Adenine nucleotide alpha hydrolases-like 52833 - Thioredoxin-like | 0 | Direct |
81923,52540 81923 - Double Clp-N motif 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
82919,53300 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like | 0 | Direct |
81995,82919 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24 | 0 | Direct |
81811,82754 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
50156,52096 50156 - PDZ domain-like 52096 - ClpP/crotonase | 0 | Direct |
52374,47323 52374 - Nucleotidylyl transferase 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0 | Direct |
64356,49447 64356 - SNARE-like 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | Direct |
46785,158702 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like | 0 | Direct |
53738,55957 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain | 0 | Direct |
50993,53474 50993 - Peptidase/esterase 'gauge' domain 53474 - alpha/beta-Hydrolases | 0 | Direct |
102848,54236 102848 - NSFL1 (p97 ATPase) cofactor p47, SEP domain 54236 - Ubiquitin-like | 0 | Direct |
50729,55961 50729 - PH domain-like 55961 - Bet v1-like | 0 | Direct |
101238,46934 101238 - XPC-binding domain 46934 - UBA-like | 0 | Direct |
53850,55021 53850 - Periplasmic binding protein-like II 55021 - ACT-like | 0 | Direct |
52425,48173 52425 - Cryptochrome/photolyase, N-terminal domain 48173 - Cryptochrome/photolyase FAD-binding domain | 0 | Direct |
51230,47005 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0 | Direct |
52540,48340 52540 - P-loop containing nucleoside triphosphate hydrolases 48340 - Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0 | Direct |
54534,54534 54534 - FKBP-like 54534 - FKBP-like | 0 | Direct |
52743,52025 52743 - Subtilisin-like 52025 - PA domain | 0 | Direct |
50249,57756 50249 - Nucleic acid-binding proteins 57756 - Retrovirus zinc finger-like domains | 0 | Direct |
58014,51064 58014 - Coiled-coil domain of nucleotide exchange factor GrpE 51064 - Head domain of nucleotide exchange factor GrpE | 0 | Direct |
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 0 | Direct |
53300,57850 53300 - vWA-like 57850 - RING/U-box | 0 | Direct |
46689,51905 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain | 0 | Direct |
55021,56112 55021 - ACT-like 56112 - Protein kinase-like (PK-like) | 0 | Direct |
158702,81296 158702 - Sec63 N-terminal domain-like 81296 - E set domains | 0 | Direct |
57850,46689 57850 - RING/U-box 46689 - Homeodomain-like | 0 | Direct |
141673,50800 141673 - MOSC N-terminal domain-like 50800 - PK beta-barrel domain-like | 0 | Direct |
158639,63748 158639 - ENT-like 63748 - Tudor/PWWP/MBT | 0 | Direct |
53448,51161 53448 - Nucleotide-diphospho-sugar transferases 51161 - Trimeric LpxA-like enzymes | 0 | Direct |
101690,69065 101690 - PAZ domain 69065 - RNase III domain-like | 0 | Direct |
109604,81301 109604 - HD-domain/PDEase-like 81301 - Nucleotidyltransferase | 0 | Direct |
51735,143548 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain | 0 | Direct |
54909,54909 54909 - Dimeric alpha+beta barrel 54909 - Dimeric alpha+beta barrel | 0 | Direct |
52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0 | Direct |
47473,103506 47473 - EF-hand 103506 - Mitochondrial carrier | 0 | Direct |
54211,55060 54211 - Ribosomal protein S5 domain 2-like 55060 - GHMP Kinase, C-terminal domain | 0 | Direct |
88697,52374 88697 - PUA domain-like 52374 - Nucleotidylyl transferase | 0 | Direct |
88659,88659 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | Direct |
49723,48484 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain) 48484 - Lipoxigenase | 0 | Direct |
55545,51445 55545 - beta-N-acetylhexosaminidase-like domain 51445 - (Trans)glycosidases | 0 | Direct |
56112,48371 56112 - Protein kinase-like (PK-like) 48371 - ARM repeat | 0 | Direct |
50729,57863 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger | 0 | Direct |
54534,48452 54534 - FKBP-like 48452 - TPR-like | 0 | Direct |
54160,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
48403,57850 48403 - Ankyrin repeat 57850 - RING/U-box | 0 | Direct |
48179,52413 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | Direct |
52540,48403 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat | 0 | Direct |
81296,51445 81296 - E set domains 51445 - (Trans)glycosidases | 0 | Direct |
88946,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | Direct |
55781,47384 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase | 0 | Direct |
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
47661,58038 47661 - t-snare proteins 58038 - SNARE fusion complex | 0 | Direct |
46785,54928 46785 - "Winged helix" DNA-binding domain 54928 - RNA-binding domain, RBD | 0 | Direct |
52172,52172 52172 - CheY-like 52172 - CheY-like | 0 | Direct |
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
54160,54160 54160 - Chromo domain-like 54160 - Chromo domain-like | 0 | Direct |
81296,52540 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
143548,55021 143548 - Serine metabolism enzymes domain 55021 - ACT-like | 0 | Direct |
52025,57850 52025 - PA domain 57850 - RING/U-box | 0 | Direct |
48239,48576 48239 - Terpenoid cyclases/Protein prenyltransferases 48576 - Terpenoid synthases | 1 | Inherited |
(show details)
Supra-domains annotated to this AP term (SPAP level: Least Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
53738,53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains | 0 | DIRECT |
81296,51445,51011 81296 - E set domains 51445 - (Trans)glycosidases 51011 - Glycosyl hydrolase domain | 0 | DIRECT |
51735,143548,55021 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain 55021 - ACT-like | 0 | DIRECT |
54160,52540,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
63411,63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase | 0 | DIRECT |
55973,55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase | 0 | DIRECT |
81296,52540,48403 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat | 0 | DIRECT |
81995,81811,82754 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
81923,52540,52540 81923 - Double Clp-N motif 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
50692,54585,52540 50692 - ADC-like 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
55785,55781,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like 55781 - GAF domain-like | 0 | DIRECT |
103657,50729,57863 103657 - BAR/IMD domain-like 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger | 0 | DIRECT |
55781,55781,55785 55781 - GAF domain-like 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
52540,46785,158702 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like | 0 | DIRECT |
158702,52540,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
52833,52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0 | DIRECT |
90229,90229,90229 90229 - CCCH zinc finger 90229 - CCCH zinc finger 90229 - CCCH zinc finger | 0 | DIRECT |
50729,57863,48403 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger 48403 - Ankyrin repeat | 0 | DIRECT |
54534,54534,54534 54534 - FKBP-like 54534 - FKBP-like 54534 - FKBP-like | 0 | DIRECT |
88946,88659,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | DIRECT |
52283,51735,143548 52283 - Formate/glycerate dehydrogenase catalytic domain-like 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain | 0 | DIRECT |
50249,57756,57756 50249 - Nucleic acid-binding proteins 57756 - Retrovirus zinc finger-like domains 57756 - Retrovirus zinc finger-like domains | 0 | DIRECT |
46785,158702,52540 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
46689,51905,54373 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0 | DIRECT |
54160,54160,52540 54160 - Chromo domain-like 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
55781,47384,55874 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0 | DIRECT |
53738,53738,55957 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain | 0 | DIRECT |
55781,55785,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
52540,52540,46785 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
53300,81995,81811 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | DIRECT |
81995,82919,53300 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like | 0 | DIRECT |
50447,54980,54980 50447 - Translation proteins 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like | 0 | DIRECT |
47364,52540,47446 47364 - Domain of the SRP/SRP receptor G-proteins 52540 - P-loop containing nucleoside triphosphate hydrolases 47446 - Signal peptide-binding domain | 0 | DIRECT |
47384,55874,52172 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like | 0 | DIRECT |
51735,48179,52413 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | DIRECT |
81698,81698,81698 81698 - FF domain 81698 - FF domain 81698 - FF domain | 0 | DIRECT |
46785,158702,81296 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 81296 - E set domains | 0 | DIRECT |
54585,52540,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
57716,57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | DIRECT |
81301,81631,55003 81301 - Nucleotidyltransferase 81631 - PAP/OAS1 substrate-binding domain 55003 - PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | DIRECT |
82919,53300,81995 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 | 0 | DIRECT |
54534,54534,48452 54534 - FKBP-like 54534 - FKBP-like 48452 - TPR-like | 0 | DIRECT |
51230,47005,52777 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases | 0 | DIRECT |
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
53738,53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains | 0 | Direct |
81296,51445,51011 81296 - E set domains 51445 - (Trans)glycosidases 51011 - Glycosyl hydrolase domain | 0 | Direct |
51735,143548,55021 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain 55021 - ACT-like | 0 | Direct |
54160,52540,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
63411,63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase | 0 | Direct |
55973,55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase | 0 | Direct |
81296,52540,48403 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat | 0 | Direct |
81995,81811,82754 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
81923,52540,52540 81923 - Double Clp-N motif 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
50692,54585,52540 50692 - ADC-like 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
55785,55781,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like 55781 - GAF domain-like | 0 | Direct |
103657,50729,57863 103657 - BAR/IMD domain-like 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger | 0 | Direct |
55781,55781,55785 55781 - GAF domain-like 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
52540,46785,158702 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like | 0 | Direct |
158702,52540,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
52833,52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0 | Direct |
90229,90229,90229 90229 - CCCH zinc finger 90229 - CCCH zinc finger 90229 - CCCH zinc finger | 0 | Direct |
50729,57863,48403 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger 48403 - Ankyrin repeat | 0 | Direct |
54534,54534,54534 54534 - FKBP-like 54534 - FKBP-like 54534 - FKBP-like | 0 | Direct |
88946,88659,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors | 0 | Direct |
52283,51735,143548 52283 - Formate/glycerate dehydrogenase catalytic domain-like 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain | 0 | Direct |
50249,57756,57756 50249 - Nucleic acid-binding proteins 57756 - Retrovirus zinc finger-like domains 57756 - Retrovirus zinc finger-like domains | 0 | Direct |
46785,158702,52540 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
46689,51905,54373 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0 | Direct |
54160,54160,52540 54160 - Chromo domain-like 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
55781,47384,55874 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0 | Direct |
53738,53738,55957 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain | 0 | Direct |
55781,55785,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
52540,52540,46785 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
53300,81995,81811 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | Direct |
81995,82919,53300 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like | 0 | Direct |
50447,54980,54980 50447 - Translation proteins 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like | 0 | Direct |
47364,52540,47446 47364 - Domain of the SRP/SRP receptor G-proteins 52540 - P-loop containing nucleoside triphosphate hydrolases 47446 - Signal peptide-binding domain | 0 | Direct |
47384,55874,52172 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like | 0 | Direct |
51735,48179,52413 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain | 0 | Direct |
81698,81698,81698 81698 - FF domain 81698 - FF domain 81698 - FF domain | 0 | Direct |
46785,158702,81296 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 81296 - E set domains | 0 | Direct |
54585,52540,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
57716,57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | Direct |
81301,81631,55003 81301 - Nucleotidyltransferase 81631 - PAP/OAS1 substrate-binding domain 55003 - PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0 | Direct |
82919,53300,81995 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 | 0 | Direct |
54534,54534,48452 54534 - FKBP-like 54534 - FKBP-like 48452 - TPR-like | 0 | Direct |
51230,47005,52777 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases | 0 | Direct |
Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
 |
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|