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Plant ANatomical entity (PAN): portion of ground tissue

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   plant anatomical entity [PO:0025131] <3>
+ + 2:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ 1:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
0:   portion of ground tissue [PO:0025059] <28>(19|21) (19|7|2)
- 1:   parenchyma [PO:0005421] <14>(11|13) (11|3|0)
- 1:   ground tissue cell [PO:0025030] <13>(7|6) (7|2|0)
- 1:   cortex [PO:0005708] <9>(7|5) (7|1|0)
- 1:   endodermis [PO:0000252] <6>(1|1) (1|0|0)
- 1:   periderm [PO:0005046] <5>(0|0) (0|0|0)
- 1:   bundle sheath [PO:0006023] <3>(0|0) (0|0|0)
- 1:   tapetum [PO:0025313] <3>(0|1) (0|1|0)
- 1:   anther wall secondary parietal cell layer [PO:0006007] <2>(0|0) (0|0|0)
- 1:   hypodermis [PO:0005051] <2>(0|0) (0|0|0)
- 1:   root cortex [PO:0000258] <2>(3|3) (3|0|0)
- 1:   shoot axis cortex [PO:0000223] <2>(4|2) (4|1|0)
- 1:   sporangium wall endothecium [PO:0030049] <2>(0|0) (0|0|0)
- 1:   anther wall primary parietal cell layer [PO:0006006] <1>(0|0) (0|0|0)
- 1:   collenchyma [PO:0005423] <1>(0|0) (0|0|0)
- 1:   interfascicular region [PO:0006202] <1>(1|0) (1|0|0)
- 1:   pericycle [PO:0006203] <1>(0|1) (0|0|0)
- 1:   stereome [PO:0030050] <1>(0|0) (0|0|0)
- 1:   anther wall middle layer [PO:0004700](0|0) (0|0|0)
- 1:   bundle sheath extension [PO:0006022](0|0) (0|0|0)
- 1:   lenticel [PO:0000031](0|0) (0|0|0)
- 1:   paraclade cortex [PO:0004721](0|0) (0|0|0)
- 1:   pedicel cortex [PO:0004722](0|0) (0|0|0)
- 1:   petiole cortex [PO:0000053](0|0) (0|0|0)
- 1:   phellem [PO:0004003](0|0) (0|0|0)
- 1:   phelloderm [PO:0005050](0|0) (0|0|0)
- 1:   portion of transmitting tissue [PO:0020102](1|1) (1|0|0)
- 1:   protosporangium endothecium [PO:0030085](0|0) (0|0|0)
- 1:   sclerenchyma [PO:0005427](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
RuBisCO, small subunit0Direct
Chlorophyll a-b binding protein0.000000000199Direct
Nucleotide-diphospho-sugar transferases0.00000000154Direct
Cullin repeat-like0.00000004726Direct
Homeodomain-like0.00000009866Direct
NAC domain0.0000002663Direct
Trimeric LpxA-like enzymes0.000000359Direct
Calcium ATPase, transduction domain A0.0000006014Direct
Calcium ATPase, transmembrane domain M0.0000006014Direct
Aquaporin-like0.000008208Direct
HD-domain/PDEase-like0.00002324Direct
ABC transporter transmembrane region0.0002675Direct
Skp1 dimerisation domain-like0.001754Inherited
HLH, helix-loop-helix DNA-binding domain0.00313Inherited
MFS general substrate transporter0.004916Inherited
HAD-like0.006633Inherited
SRF-like0.01668Inherited
POZ domain0.2076Inherited
EF-hand0.6588Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
RuBisCO, small subunit0Direct
MioX-like0Direct
GlmU C-terminal domain-like0.000000000008029Direct
Chlorophyll a-b binding protein0.0000000001334Direct
glucose-1-phosphate thymidylyltransferase0.000000000357Direct
Exocyst complex component0.000000002895Direct
Meta-cation ATPase, catalytic domain P0.00000004204Direct
Homeodomain0.00000005718Direct
Galactosyltransferase LgtC0.0000002042Direct
NAC domain0.0000004904Direct
Calcium ATPase, transduction domain A0.0000007338Direct
Calcium ATPase, transmembrane domain M0.000002013Direct
Aquaporin-like0.00001077Direct
ABC transporter ATPase domain-like0.0000776Direct
ABC transporter transmembrane region0.0001919Direct
Myb/SANT domain0.00297Inherited
HLH, helix-loop-helix DNA-binding domain0.004087Inherited
Actin/HSP700.01783Inherited
SRF-like0.0197Inherited
Leucine zipper domain0.02172Inherited
U-box0.07515Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RuBisCO, small subunit0Direct
Chlorophyll a-b binding protein0.0000000001537Direct
Nucleotide-diphospho-sugar transferases0.000000001191Direct
Cullin repeat-like0.0000000366Direct
Homeodomain-like0.00000007648Direct
NAC domain0.0000002065Direct
Trimeric LpxA-like enzymes0.0000002786Direct
Calcium ATPase, transduction domain A0.0000004669Direct
Calcium ATPase, transmembrane domain M0.0000004669Direct
Aquaporin-like0.000006394Direct
HD-domain/PDEase-like0.00001814Direct
ABC transporter transmembrane region0.0002103Direct
Skp1 dimerisation domain-like0.001396Inherited
HLH, helix-loop-helix DNA-binding domain0.002502Inherited
MFS general substrate transporter0.003945Inherited
HAD-like0.005342Inherited
SRF-like0.01364Inherited
POZ domain0.1874Inherited
EF-hand0.6345Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53448,51161
  • 53448 - Nucleotide-diphospho-sugar transferases
  • 51161 - Trimeric LpxA-like enzymes
  • 0.000000000036Direct
    56784,81665
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000001342Direct
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0001774Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0002154Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.001396Inherited
    52047,52058
  • 52047 - RNI-like
  • 52058 - L domain-like
  • 0.005901Inherited
    57850,48371
  • 57850 - RING/U-box
  • 48371 - ARM repeat
  • 0.01664Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.000175Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000175Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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