SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): primordium

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + 2:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ 1:   portion of meristem tissue [PO:0009013] <23>(122|205) (124|96|39)
0:   primordium [PO:0025127] <4>(12|12) (12|3|0)
- 1:   floral organ primordium [PO:0025477] <10>(1|1) (1|0|0)
- 1:   phyllome primordium [PO:0025128] <10>(6|6) (6|2|0)
- 1:   root primordium [PO:0005029] <3>(6|6) (6|1|0)
- 1:   leaflet primordium [PO:0025481](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Magnesium transport protein CorA, transmembrane region0.000000003579Direct
UDP-Glycosyltransferase/glycogen phosphorylase0.0000000267Direct
Homeodomain-like0.0000000417Direct
Band 7/SPFH domain0.00000005275Direct
Lipoxigenase0.000001951Direct
DNA-binding pseudobarrel domain0.00000861Direct
Lipase/lipooxygenase domain (PLAT/LH2 domain)0.00004577Direct
Bet v1-like0.0001516Direct
Cullin repeat-like0.0001798Direct
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin0.0001953Direct
Histone-fold0.0008976Direct
HAD-like0.00253Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trehalose-6-phosphate synthase, OtsA0.00000000000001148Direct
Homeodomain0.00000000000005584Direct
Magnesium transport protein CorA, transmembrane region0.000000155Direct
Plant lipoxigenases0.000001928Direct
Lipoxigenase N-terminal domain0.000001928Direct
B3 DNA binding domain0.000008541Direct
Plant lipid-transfer and hydrophobic proteins0.00004131Direct
Nucleosome core histones0.00004131Direct
Trehalose-phosphatase0.00004532Direct
UDPGT-like0.0006632Direct
Exocyst complex component0.0007477Direct
Cyclin0.003385Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Magnesium transport protein CorA, transmembrane region0.000000002769Direct
UDP-Glycosyltransferase/glycogen phosphorylase0.00000002068Direct
Homeodomain-like0.0000000323Direct
Band 7/SPFH domain0.00000004086Direct
Lipoxigenase0.000001516Direct
DNA-binding pseudobarrel domain0.000006707Direct
Lipase/lipooxygenase domain (PLAT/LH2 domain)0.00003579Direct
Bet v1-like0.0001189Direct
Cullin repeat-like0.0001412Direct
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin0.0001535Direct
Histone-fold0.0007105Direct
HAD-like0.002018Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53756,56784
  • 53756 - UDP-Glycosyltransferase/glycogen phosphorylase
  • 56784 - HAD-like
  • 0.0000000000002986Direct
    55961,55961
  • 55961 - Bet v1-like
  • 55961 - Bet v1-like
  • 0.000000002824Direct
    49723,48484
  • 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain)
  • 48484 - Lipoxigenase
  • 0.000001516Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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