SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): pollen tube cell

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   plant anatomical entity [PO:0025131] <3>
+ + 2:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ 1:   plant cell [PO:0009002] <33>(418|600) (419|264|86)
0:   pollen tube cell [PO:0025195](27|28) (27|19|9)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Zinc-binding domain of translation initiation factor 2 beta0Direct
Aconitase iron-sulfur domain0Direct
Ribosomal protein L16p/L10e0Direct
Glutamyl tRNA-reductase catalytic, N-terminal domain0Direct
Preprotein translocase SecE subunit0Direct
Glutamyl tRNA-reductase dimerization domain0Direct
S-adenosylmethionine synthetase0Direct
SNARE fusion complex0.0000001036Direct
EF-hand0.0000004698Direct
Ubiquitin-like0.0000007609Direct
PH domain-like0.00001548Direct
UBC-like0.00002346Direct
Acyl-CoA dehydrogenase NM domain-like0.00002481Direct
t-snare proteins0.00002797Direct
Actin-like ATPase domain0.00004227Direct
SNARE-like0.00004523Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00007221Direct
RING/U-box0.00008872Direct
AN1-like Zinc finger0.0001389Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0001414Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.0001762Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0004221Direct
HAD-like0.000429Direct
GAT-like domain0.0005287Direct
SufE/NifU0.0008739Direct
eIF1-like0.0008739Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
EDF1-like0Direct
Ribosomal protein L10e0Direct
Cytidylyltransferase0Direct
PAPS reductase-like0Direct
Preprotein translocase SecE subunit0Direct
Aconitase iron-sulfur domain0Direct
Nuclear movement domain0Direct
Glutamyl tRNA-reductase catalytic, N-terminal domain0Direct
Heme-dependent catalases0Direct
S-adenosylmethionine synthetase0Direct
NifU/IscU domain0Direct
RhoGDI-like0Direct
Eps15 homology domain (EH domain)0Direct
Zinc-binding domain of translation initiation factor 2 beta0Direct
SNARE fusion complex0.0000001325Direct
G proteins0.0000128Direct
Calmodulin-like0.00004258Direct
t-snare proteins0.00008097Direct
UBC-related0.00009101Direct
Actin/HSP700.0001219Direct
AN1-like Zinc finger0.0001339Direct
Phosphoinositide-binding clathrin adaptor, domain 20.0001339Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0001445Direct
GABARAP-like0.0003615Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0004135Direct
HSP200.000617Direct
LIM domain0.0007842Direct
eIF1-like0.0007842Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Glutamyl tRNA-reductase catalytic, N-terminal domain0Direct
S-adenosylmethionine synthetase0Direct
Aconitase iron-sulfur domain0Direct
Zinc-binding domain of translation initiation factor 2 beta0Direct
Heme-dependent catalase-like0Direct
Glutamyl tRNA-reductase dimerization domain0Direct
Preprotein translocase SecE subunit0Direct
Ribosomal protein L16p/L10e0Direct
SNARE fusion complex0.0000000803Direct
EF-hand0.0000003646Direct
Ubiquitin-like0.0000005908Direct
PH domain-like0.00001207Direct
UBC-like0.00001832Direct
Acyl-CoA dehydrogenase NM domain-like0.00001937Direct
t-snare proteins0.00002185Direct
Actin-like ATPase domain0.00003304Direct
SNARE-like0.00003536Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00005651Direct
RING/U-box0.00006949Direct
AN1-like Zinc finger0.000109Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000111Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.0001384Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0003328Direct
HAD-like0.0003383Direct
GAT-like domain0.0004174Direct
eIF1-like0.0006917Direct
SufE/NifU0.0006917Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,158702
  • 46785 - "Winged helix" DNA-binding domain
  • 158702 - Sec63 N-terminal domain-like
  • 0Direct
    100966,75689
  • 100966 - Translation initiation factor 2 beta, aIF2beta, N-terminal domain
  • 75689 - Zinc-binding domain of translation initiation factor 2 beta
  • 0Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0Direct
    53732,52016
  • 53732 - Aconitase iron-sulfur domain
  • 52016 - LeuD/IlvD-like
  • 0Direct
    50729,55961
  • 50729 - PH domain-like
  • 55961 - Bet v1-like
  • 0Direct
    69742,51735
  • 69742 - Glutamyl tRNA-reductase catalytic, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    158702,52540
  • 158702 - Sec63 N-terminal domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52402,52833
  • 52402 - Adenine nucleotide alpha hydrolases-like
  • 52833 - Thioredoxin-like
  • 0Direct
    51735,69075
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 69075 - Glutamyl tRNA-reductase dimerization domain
  • 0Direct
    48403,57850
  • 48403 - Ankyrin repeat
  • 57850 - RING/U-box
  • 0Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.000009006Direct
    56645,47203
  • 56645 - Acyl-CoA dehydrogenase NM domain-like
  • 47203 - Acyl-CoA dehydrogenase C-terminal domain-like
  • 0.00001937Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000111Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000175Direct
    48464,89009
  • 48464 - ENTH/VHS domain
  • 89009 - GAT-like domain
  • 0.0002426Direct
    57716,118310
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 118310 - AN1-like Zinc finger
  • 0.000306Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0003619Direct
    54236,54236
  • 54236 - Ubiquitin-like
  • 54236 - Ubiquitin-like
  • 0.0003918Direct
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0005922Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46785,158702,81296
  • 46785 - "Winged helix" DNA-binding domain
  • 158702 - Sec63 N-terminal domain-like
  • 81296 - E set domains
  • 0Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0Direct
    52540,52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    46785,158702,52540
  • 46785 - "Winged helix" DNA-binding domain
  • 158702 - Sec63 N-terminal domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    158702,52540,52540
  • 158702 - Sec63 N-terminal domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,46785,158702
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 158702 - Sec63 N-terminal domain-like
  • 0Direct
    69742,51735,69075
  • 69742 - Glutamyl tRNA-reductase catalytic, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 69075 - Glutamyl tRNA-reductase dimerization domain
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000111Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0003619Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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