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Fly Anatomy (FA): cell
(show info)
Phenotype Ontology
Like Gene Ontology (GO), phenotypy ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Phenotype ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology (DO) DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology (HP) HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology (MP) MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology (WP) WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology (YP) Based on YP which is the major contributor to the Ascomycete phenotype ontology, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology (FP) FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology (FA) FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology (ZA) ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology (XA) XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology (AP) As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology (EC) Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- DrugBank ATC (DB) Ontology (DB) In the Anatomical Therapeutic Chemical (ATC) classification system, drugs are classified in groups at five different levels according to the organ or system (1st level, anatomical main group) on which they act and their therapeutic (2nd level, therapeutic subgroup), pharmacological (3rd level, pharmacological subgroup) and chemical properties (4th level, chemical subgroup; 5th level, chemical substance). Only drugs in DrugBank are considered.
- UniProtKB KeyWords (KW) Ontology (KW) Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- UniProtKB UniPathway (UP) Ontology (UP) UP is a fully manually curated resource for the representation and annotation of metabolic pathways, being used as controlled vocabulary for pathway annotation in UniProtKB.
Structural Domain Phenotype Ontology and its Annotations
Structural Classification of Proteins (SCOP) classifies evolutionary-related domains into Superfamily level and Family level. Using the phenotype ontologies above, we have generated the domain-centric phenotype annotations, and further identified those phenotype terms which are the most informative to annotate SCOP domains. Promisingly, domain-centric phenotypic annotations can serve as an alternative starting point to explore genotype-phenotype relationships. We provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Structural Domain Disease Ontology (DO) Ontology (SDDO) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DO.txt, and the corresponding ontology:SDDO.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Human Phenotype (HP) Ontology (SDHP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2HP.txt, and the corresponding ontology:SDHP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Mouse Phenotype (MP) Ontology (SDMP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2MP.txt, and the corresponding ontology:SDMP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Worm Phenotype (WP) Ontology (SDWP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2WP.txt, and the corresponding ontology:SDWP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Yeast Phenotype (YP) Ontology (SDYP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2YP.txt, and the corresponding ontology:SDYP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Phenotype (FP) Ontology (SDFP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FP.txt, and the corresponding ontology:SDFP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Anatomy (FA) Ontology (SDFA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FA.txt, and the corresponding ontology:SDFA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Zebrafish Anatomy (ZA) Ontology (SDZA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2ZA.txt, and the corresponding ontology:SDZA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Xenopus Anatomy (XA) Ontology (SDXA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2XA.txt, and the corresponding ontology:SDXA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Arabidopsis Plant Ontology (AP) Ontology (SDAP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2AP.txt, and the corresponding ontology:SDAP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Enzyme Commission (EC) Ontology (SDEC) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2EC.txt, and the corresponding ontology:SDEC.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain DrugBank ATC (DB) Ontology (SDDB) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DB.txt, and the corresponding ontology:SDDB.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB KeyWords (KW) Ontology (SDKW) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2KW.txt, and the corresponding ontology:SDKW.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB UniPathway (UP) Ontology (SDUP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2UP.txt, and the corresponding ontology:SDUP.txt) and mysql tables (Domain2PO.sql.gz).
Supra-domain Phenotype Ontology and its Annotations
Although domain-centric annotations hold great promise in describing phenotypic nature of independent domains, most domains themselves may not just work alone. In multi-domain proteins, they may be combined together to form distinct domain architectures. The recombination of the existing domains is considered as one of major driving forces for phenotypic diversificaation. As an extension, we have also generated supra-domain phenotype ontology and its annotations. Compared to domain-centric phenotype ontology and annotations (SCOP domains at the Superfamily level and Family level), this version focuses on supra-domains and individual SCOP domains ONLY at the Superfamily level. Besides, in terms of individual superfamilies, their annotations from the domain-centric version may be different from those from supra-domains version. Depending on your focus, the former should be used for the consideration of both the Superfamily level and Family level, otherwise the latter should be used if you are interested in domain combinations. Also, we provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Supra-domain Domain Disease Ontology (DO) Ontology (SPDO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DO.txt, and the corresponding ontology:SPDO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Human Phenotype (HP) Ontology (SPHO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2HP.txt, and the corresponding ontology:SPHO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Mouse Phenotype (MP) Ontology (SPMP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2MP.txt, and the corresponding ontology:SPMP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Worm Phenotype (WP) Ontology (SPWP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2WP.txt, and the corresponding ontology:SPWP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Yeast Phenotype (YP) Ontology (SPYP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2YP.txt, and the corresponding ontology:SPYP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Phenotype (FP) Ontology (SPFP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FP.txt, and the corresponding ontology:SPFP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Anatomy (FA) Ontology (SPFA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FA.txt, and the corresponding ontology:SPFA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Zebrafish Anatomy (ZA) Ontology (SPZA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2ZA.txt, and the corresponding ontology:SPZA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Xenopus Anatomy (XA) Ontology (SPXA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2XA.txt, and the corresponding ontology:SPXA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Arabidopsis Plant Ontology (AP) Ontology (SPAP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2AP.txt, and the corresponding ontology:SPAP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Enzyme Commission (EC) Ontology (SPEC) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2EC.txt, and the corresponding ontology:SPEC.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain DrugBank ATC (DB) Ontology (SPDB) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DB.txt, and the corresponding ontology:SPDB.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB KeyWords (KW) Ontology (SPKW) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2KW.txt, and the corresponding ontology:SPKW.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB UniPathway (UP) Ontology (SPUP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2UP.txt, and the corresponding ontology:SPUP.txt) and mysql tables (SP2PO.sql.gz).
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Root: FA Hierarchy (fly anatomy from FlyBase anatomy ontology)
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Superfamily domains annotated to this FA term (Not in SDFA)
Highlighted in gray are those with FDR_all>0.001
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Family domains annotated to this FA term (Not in SDFA)
Highlighted in gray are those with FDR_all>0.001
SCOP term | FDR (all) | Annotation (direct or inherited) |
Eps15 homology domain (EH domain) | 0 | DIRECT |
Tubulin, C-terminal domain | 0 | DIRECT |
Kelch motif | 0 | DIRECT |
Extracellular domain of cell surface receptors | 0 | DIRECT |
MBT repeat | 0 | DIRECT |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0 | DIRECT |
Tetramerization domain of potassium channels | 0 | DIRECT |
Elongation factors | 0 | DIRECT |
t-snare proteins | 0 | DIRECT |
Rel/Dorsal transcription factors, DNA-binding domain | 0 | DIRECT |
cAMP-binding domain | 0 | DIRECT |
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0 | DIRECT |
BAR domain | 0 | DIRECT |
B-box zinc-binding domain | 0 | DIRECT |
CAD domain | 0 | DIRECT |
Smc hinge domain | 0 | DIRECT |
Glutathione S-transferase (GST), C-terminal domain | 0 | DIRECT |
Diacylglycerol kinase-like | 0 | DIRECT |
Proteasome subunits | 0 | DIRECT |
Myb/SANT domain | 0 | DIRECT |
SPRY domain | 0 | DIRECT |
Zf-UBP | 0 | DIRECT |
Armadillo repeat | 0 | DIRECT |
Metal cation-transporting ATPase, ATP-binding domain N | 0 | DIRECT |
Isoprenyl diphosphate synthases | 0 | DIRECT |
Laminin-type module | 0 | DIRECT |
Transforming growth factor (TGF)-beta | 0 | DIRECT |
Plexin repeat | 0 | DIRECT |
Tubulin, GTPase domain | 0 | DIRECT |
Sec1/munc18-like (SM) proteins | 0 | DIRECT |
Arrestin/Vps26-like | 0 | DIRECT |
Cell cycle control phosphatase, catalytic domain | 0 | DIRECT |
SAP domain | 0 | DIRECT |
DNA polymerase III clamp loader subunits, C-terminal domain | 0 | DIRECT |
Mob1/phocein | 0 | DIRECT |
Laminin G-like module | 0 | DIRECT |
Prefoldin | 0 | DIRECT |
Extended AAA-ATPase domain | 0 | DIRECT |
Nitrogenase iron protein-like | 0 | DIRECT |
RNase III catalytic domain-like | 0 | DIRECT |
Anticodon-binding domain of Class II aaRS | 0 | DIRECT |
Glutathione S-transferase (GST), N-terminal domain | 0 | DIRECT |
MSP-like | 0 | DIRECT |
SMAD MH1 domain | 0 | DIRECT |
Frizzled cysteine-rich domain | 0 | DIRECT |
Fibroblast growth factors (FGF) | 0 | DIRECT |
YWTD domain | 0 | DIRECT |
Histone deacetylase, HDAC | 0 | DIRECT |
2Fe-2S ferredoxin domains from multidomain proteins | 0 | DIRECT |
Sema domain | 0 | DIRECT |
POU-specific domain | 0 | DIRECT |
Aminoacid dehydrogenase-like, C-terminal domain | 0 | DIRECT |
Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta | 0 | DIRECT |
SCF ubiquitin ligase complex WHB domain | 0 | DIRECT |
Cullin homology domain | 0 | DIRECT |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
CoA-binding domain | 0 | DIRECT |
Integrin domains | 0 | DIRECT |
beta-CASP RNA-metabolising hydrolases | 0 | DIRECT |
Cullin repeat | 0 | DIRECT |
Group II chaperonin (CCT, TRIC), intermediate domain | 0 | DIRECT |
Inositol polyphosphate 5-phosphatase (IPP5) | 0 | DIRECT |
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0 | DIRECT |
Tropomyosin | 0 | DIRECT |
Pointed domain | 0 | DIRECT |
MIR domain | 0 | DIRECT |
NHL repeat | 0 | DIRECT |
Choline/Carnitine O-acyltransferase | 0 | DIRECT |
Ankyrin repeat | 0.01894 | INHERITED FROM: Johnston organ neuron || ventral multidendritic neuron |
SH3-domain | 0.06449 | INHERITED FROM: synapse |
Double-stranded RNA-binding domain (dsRBD) | 0.08666 | INHERITED FROM: germline cell |
Spectrin repeat | 0.1107 | INHERITED FROM: oocyte || copper cell || midgut enterocyte || enterocyte |
Calponin-homology domain, CH-domain | 0.129 | INHERITED FROM: flight muscle || indirect flight muscle |
Phoshoinositide 3-kinase (PI3K), catalytic domain | 0.1815 | INHERITED FROM: intestinal stem cell |
Transducin (alpha subunit), insertion domain | 0.2305 | INHERITED FROM: eo neuron |
Ubiquitin-related | 0.2317 | INHERITED FROM: mushroom body extrinsic neuron |
I set domains | 0.2709 | INHERITED FROM: larval abdominal sensory neuron || embryonic somatic muscle || visceral muscle fiber || cardioblast || gustatory system neuron || leg taste bristle chemosensory neuron || LN period neuron || embryonic/larval lateral glial cell || adult descending neuron || pacemaker neuron || interface glial cell || embryonic heart cardioblast || gustatory receptor neuron || LNv neuron || mechanosensory system neuron || s-LNv neuron || adult pacemaker neuron || embryonic cardioblast |
Protein kinases, catalytic subunit | 0.2753 | INHERITED FROM: intestinal stem cell || somatic cell of ovariole || photoreceptor cell R8 of pale ommatidium |
ZZ domain | 0.2953 | INHERITED FROM: flight muscle || skeletal muscle of thorax || indirect flight muscle || skeletal muscle of mesothorax || adult somatic muscle |
RecA protein-like (ATPase-domain) | 0.2953 | INHERITED FROM: oocyte || female germline cell || presumptive oocyte || nurse cell |
Pancreatic lipase, N-terminal domain | 0.2953 | INHERITED FROM: ganglion mother cell |
SMAD domain | 0.2953 | INHERITED FROM: female germline stem cell || germline stem cell |
Cap-Gly domain | 0.3756 | INHERITED FROM: interneuron |
G proteins | 0.3778 | INHERITED FROM: hemocyte |
PDZ domain | 0.3971 | INHERITED FROM: epithelial cell || somatic cell of ovariole |
Motor proteins | 0.402 | INHERITED FROM: germline cell |
Cadherin | 0.4029 | INHERITED FROM: outer photoreceptor cell || photoreceptor cell R4 |
PLC-like (P variant) | 0.4029 | INHERITED FROM: larval dorsal multidendritic neuron || larval dorsal multidendritic neuron ddaC |
Fibronectin type III | 0.4427 | INHERITED FROM: LN period neuron || pacemaker neuron || embryonic heart cardioblast || gustatory receptor neuron || LNv neuron || s-LNv neuron || adult pacemaker neuron |
Homeodomain | 0.4646 | INHERITED FROM: interneuron || embryonic/larval neuron || embryonic neuroblast || maxillary palp olfactory receptor neuron || hypodermal muscle of prothorax || ventral intersegmental muscle || dorsal margin photoreceptor || prothoracic ventral intersegmental muscle || A1-7 ventral acute muscle 1 || U neuron || EL neuron || thoracic neuroblast || uniglomerular antennal lobe projection neuron |
EGF-type module | 0.5027 | INHERITED FROM: dorsal acute muscle || embryonic/larval midgut cell || somatic cell of testis || pigment cell || head mesoderm derived embryonic hemocyte || hub cell || adult midgut progenitor cell |
Cyclin | 0.5411 | INHERITED FROM: female germline cell |
Paired domain | 0.5411 | INHERITED FROM: EG neuron || RP2 motor neuron || U neuron || EL neuron |
Caspase catalytic domain | 0.5693 | INHERITED FROM: peptidergic neuron |
Nuclear receptor ligand-binding domain | 0.6167 | INHERITED FROM: interneuron || supraesophageal ganglion neuron || mushroom body intrinsic neuron |
HLH, helix-loop-helix DNA-binding domain | 0.6184 | INHERITED FROM: EL neuron || sensory mother cell |
Nuclear receptor | 0.6431 | INHERITED FROM: interneuron || supraesophageal ganglion neuron || mushroom body intrinsic neuron |
Cytochrome P450 | 0.7169 | INHERITED FROM: neuropil associated CNS glial cell || midline glial cell || CNS glial cell || larval VNC neuropil glial cell || larval neuropil glial cell || embryonic/larval glial cell |
FYVE, a phosphatidylinositol-3-phosphate binding domain | 0.7849 | INHERITED FROM: nephrocyte || garland cell || embryonic/larval garland cell |
Growth factor receptor domain | 0.7849 | INHERITED FROM: head mesoderm derived embryonic hemocyte || embryonic hemocyte |
SH2 domain | 0.8181 | INHERITED FROM: histaminergic neuron || photoreceptor cell || sensory organ cell || adult optic lobe neuron || cyst progenitor cell || photoreceptor cell R7 || rhabdomeric photoreceptor cell |
Forkhead DNA-binding domain | 0.8491 | INHERITED FROM: RP2sib neuron |
Hairy Orange domain | 0.8498 | INHERITED FROM: EG neuron || EL neuron |
Classic zinc finger, C2H2 | 1 | INHERITED FROM: embryonic ganglion mother cell |
SCOP term | FDR (all) | Annotation (direct or inherited) |
Eps15 homology domain (EH domain) | 0 | Direct |
Tubulin, C-terminal domain | 0 | Direct |
Kelch motif | 0 | Direct |
Extracellular domain of cell surface receptors | 0 | Direct |
MBT repeat | 0 | Direct |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0 | Direct |
Tetramerization domain of potassium channels | 0 | Direct |
Elongation factors | 0 | Direct |
t-snare proteins | 0 | Direct |
Rel/Dorsal transcription factors, DNA-binding domain | 0 | Direct |
cAMP-binding domain | 0 | Direct |
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0 | Direct |
BAR domain | 0 | Direct |
B-box zinc-binding domain | 0 | Direct |
CAD domain | 0 | Direct |
Smc hinge domain | 0 | Direct |
Glutathione S-transferase (GST), C-terminal domain | 0 | Direct |
Diacylglycerol kinase-like | 0 | Direct |
Proteasome subunits | 0 | Direct |
Myb/SANT domain | 0 | Direct |
SPRY domain | 0 | Direct |
Zf-UBP | 0 | Direct |
Armadillo repeat | 0 | Direct |
Metal cation-transporting ATPase, ATP-binding domain N | 0 | Direct |
Isoprenyl diphosphate synthases | 0 | Direct |
Laminin-type module | 0 | Direct |
Transforming growth factor (TGF)-beta | 0 | Direct |
Plexin repeat | 0 | Direct |
Tubulin, GTPase domain | 0 | Direct |
Sec1/munc18-like (SM) proteins | 0 | Direct |
Arrestin/Vps26-like | 0 | Direct |
Cell cycle control phosphatase, catalytic domain | 0 | Direct |
SAP domain | 0 | Direct |
DNA polymerase III clamp loader subunits, C-terminal domain | 0 | Direct |
Mob1/phocein | 0 | Direct |
Laminin G-like module | 0 | Direct |
Prefoldin | 0 | Direct |
Extended AAA-ATPase domain | 0 | Direct |
Nitrogenase iron protein-like | 0 | Direct |
RNase III catalytic domain-like | 0 | Direct |
Anticodon-binding domain of Class II aaRS | 0 | Direct |
Glutathione S-transferase (GST), N-terminal domain | 0 | Direct |
MSP-like | 0 | Direct |
SMAD MH1 domain | 0 | Direct |
Frizzled cysteine-rich domain | 0 | Direct |
Fibroblast growth factors (FGF) | 0 | Direct |
YWTD domain | 0 | Direct |
Histone deacetylase, HDAC | 0 | Direct |
2Fe-2S ferredoxin domains from multidomain proteins | 0 | Direct |
Sema domain | 0 | Direct |
POU-specific domain | 0 | Direct |
Aminoacid dehydrogenase-like, C-terminal domain | 0 | Direct |
Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta | 0 | Direct |
SCF ubiquitin ligase complex WHB domain | 0 | Direct |
Cullin homology domain | 0 | Direct |
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
CoA-binding domain | 0 | Direct |
Integrin domains | 0 | Direct |
beta-CASP RNA-metabolising hydrolases | 0 | Direct |
Cullin repeat | 0 | Direct |
Group II chaperonin (CCT, TRIC), intermediate domain | 0 | Direct |
Inositol polyphosphate 5-phosphatase (IPP5) | 0 | Direct |
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0 | Direct |
Tropomyosin | 0 | Direct |
Pointed domain | 0 | Direct |
MIR domain | 0 | Direct |
NHL repeat | 0 | Direct |
Choline/Carnitine O-acyltransferase | 0 | Direct |
Ankyrin repeat | 0.01894 | Inherited |
SH3-domain | 0.06449 | Inherited |
Double-stranded RNA-binding domain (dsRBD) | 0.08666 | Inherited |
Spectrin repeat | 0.1107 | Inherited |
Calponin-homology domain, CH-domain | 0.129 | Inherited |
Phoshoinositide 3-kinase (PI3K), catalytic domain | 0.1815 | Inherited |
Transducin (alpha subunit), insertion domain | 0.2305 | Inherited |
Ubiquitin-related | 0.2317 | Inherited |
I set domains | 0.2709 | Inherited |
Protein kinases, catalytic subunit | 0.2753 | Inherited |
ZZ domain | 0.2953 | Inherited |
RecA protein-like (ATPase-domain) | 0.2953 | Inherited |
Pancreatic lipase, N-terminal domain | 0.2953 | Inherited |
SMAD domain | 0.2953 | Inherited |
Cap-Gly domain | 0.3756 | Inherited |
G proteins | 0.3778 | Inherited |
PDZ domain | 0.3971 | Inherited |
Motor proteins | 0.402 | Inherited |
Cadherin | 0.4029 | Inherited |
PLC-like (P variant) | 0.4029 | Inherited |
Fibronectin type III | 0.4427 | Inherited |
Homeodomain | 0.4646 | Inherited |
EGF-type module | 0.5027 | Inherited |
Cyclin | 0.5411 | Inherited |
Paired domain | 0.5411 | Inherited |
Caspase catalytic domain | 0.5693 | Inherited |
Nuclear receptor ligand-binding domain | 0.6167 | Inherited |
HLH, helix-loop-helix DNA-binding domain | 0.6184 | Inherited |
Nuclear receptor | 0.6431 | Inherited |
Cytochrome P450 | 0.7169 | Inherited |
FYVE, a phosphatidylinositol-3-phosphate binding domain | 0.7849 | Inherited |
Growth factor receptor domain | 0.7849 | Inherited |
SH2 domain | 0.8181 | Inherited |
Forkhead DNA-binding domain | 0.8491 | Inherited |
Hairy Orange domain | 0.8498 | Inherited |
Classic zinc finger, C2H2 | 1 | Inherited |
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
Supra-domains annotated to this FA term (Not in SPFA)
Highlighted in gray are those with FDR>0.001
(show details)
Supra-domains annotated to this FA term (Not in SPFA)
Highlighted in gray are those with FDR>0.001
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
74788,75632 74788 - Cullin repeat-like 75632 - Cullin homology domain | 0 | DIRECT |
57196,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | DIRECT |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
49899,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin | 0 | DIRECT |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0 | DIRECT |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0 | DIRECT |
49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57850,57850 57850 - RING/U-box 57850 - RING/U-box | 0 | DIRECT |
50447,50465 50447 - Translation proteins 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0 | DIRECT |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0 | DIRECT |
54534,48452 54534 - FKBP-like 48452 - TPR-like | 0 | DIRECT |
81296,81296 81296 - E set domains 81296 - E set domains | 0 | DIRECT |
52540,48019 52540 - P-loop containing nucleoside triphosphate hydrolases 48019 - post-AAA+ oligomerization domain-like | 0 | DIRECT |
81660,56784 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like | 0 | DIRECT |
55753,55753 55753 - Actin depolymerizing proteins 55753 - Actin depolymerizing proteins | 0 | DIRECT |
52540,50447 52540 - P-loop containing nucleoside triphosphate hydrolases 50447 - Translation proteins | 0 | DIRECT |
75632,46785 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
52490,55307 52490 - Tubulin nucleotide-binding domain-like 55307 - Tubulin C-terminal domain-like | 0 | DIRECT |
63748,63748 63748 - Tudor/PWWP/MBT 63748 - Tudor/PWWP/MBT | 0 | DIRECT |
52833,47616 52833 - Thioredoxin-like 47616 - GST C-terminal domain-like | 0 | DIRECT |
51206,51206 51206 - cAMP-binding domain-like 51206 - cAMP-binding domain-like | 0 | DIRECT |
47220,47220 47220 - alpha-catenin/vinculin-like 47220 - alpha-catenin/vinculin-like | 0 | DIRECT |
54768,54768 54768 - dsRNA-binding domain-like 54768 - dsRNA-binding domain-like | 0 | DIRECT |
52777,52777 52777 - CoA-dependent acyltransferases 52777 - CoA-dependent acyltransferases | 0 | DIRECT |
53223,51735 53223 - Aminoacid dehydrogenase-like, N-terminal domain 51735 - NAD(P)-binding Rossmann-fold domains | 0 | DIRECT |
48403,48403 48403 - Ankyrin repeat 48403 - Ankyrin repeat | 0 | DIRECT |
46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | DIRECT |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1423 | INHERITED FROM: sensory organ cell || somatic cell of testis || tertiary pigment cell || embryonic/larval somatic muscle || pericardial cell || secondary pigment cell || eye photoreceptor cell stalk || hub cell || nephrocyte || embryonic/larval pericardial cell || rhabdomeric photoreceptor cell |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.2022 | INHERITED FROM: s-LNv neuron || longitudinal muscle || embryonic somatic muscle || embryonic heart cardioblast || pacemaker neuron || LNv neuron || adult pacemaker neuron || leg taste bristle chemosensory neuron || interommatidial precursor cell || cardioblast || embryonic cardioblast |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.2236 | INHERITED FROM: eo neuron |
49562,49562 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0.3703 | INHERITED FROM: bouton || synapse |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0.3703 | INHERITED FROM: photoreceptor cell R7 || inner photoreceptor cell |
50978,50978 50978 - WD40 repeat-like 50978 - WD40 repeat-like | 0.3908 | INHERITED FROM: mechanosensory neuron || mechanosensory system neuron |
49313,49313 49313 - Cadherin-like 49313 - Cadherin-like | 0.3908 | INHERITED FROM: photoreceptor cell R4 || outer photoreceptor cell |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.4697 | INHERITED FROM: multidendritic neuron || dendritic arborizing neuron || abdominal neuron || larval abdominal sensory neuron |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.5648 | INHERITED FROM: giant fiber neuron || mechanosensory neuron || s-LNv neuron || embryonic heart cardioblast || chemosensory system neuron || neuropil associated CNS glial cell || pacemaker neuron || LNv neuron || adult pacemaker neuron || adult descending neuron || chemosensory neuron || leg taste bristle chemosensory neuron || gustatory receptor neuron |
47954,47954 47954 - Cyclin-like 47954 - Cyclin-like | 0.7023 | INHERITED FROM: female germline cell |
47473,47473 47473 - EF-hand 47473 - EF-hand | 0.768 | INHERITED FROM: bouton |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0.7723 | INHERITED FROM: 5-6I || 5-6I of thorax || EG neuron || EL neuron || thoracic neuron |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.8491 | INHERITED FROM: pigment cell || crystal cell || head mesoderm derived embryonic hemocyte || somatic cell of testis || photoreceptor cell R7 || hub cell || embryonic hemocyte || inner photoreceptor cell |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | INHERITED FROM: embryonic ganglion mother cell |
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
74788,75632 74788 - Cullin repeat-like 75632 - Cullin homology domain | 0 | Direct |
57196,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | Direct |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
49899,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin | 0 | Direct |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0 | Direct |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0 | Direct |
49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57850,57850 57850 - RING/U-box 57850 - RING/U-box | 0 | Direct |
50447,50465 50447 - Translation proteins 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0 | Direct |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0 | Direct |
54534,48452 54534 - FKBP-like 48452 - TPR-like | 0 | Direct |
81296,81296 81296 - E set domains 81296 - E set domains | 0 | Direct |
52540,48019 52540 - P-loop containing nucleoside triphosphate hydrolases 48019 - post-AAA+ oligomerization domain-like | 0 | Direct |
81660,56784 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like | 0 | Direct |
55753,55753 55753 - Actin depolymerizing proteins 55753 - Actin depolymerizing proteins | 0 | Direct |
52540,50447 52540 - P-loop containing nucleoside triphosphate hydrolases 50447 - Translation proteins | 0 | Direct |
75632,46785 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
52490,55307 52490 - Tubulin nucleotide-binding domain-like 55307 - Tubulin C-terminal domain-like | 0 | Direct |
63748,63748 63748 - Tudor/PWWP/MBT 63748 - Tudor/PWWP/MBT | 0 | Direct |
52833,47616 52833 - Thioredoxin-like 47616 - GST C-terminal domain-like | 0 | Direct |
51206,51206 51206 - cAMP-binding domain-like 51206 - cAMP-binding domain-like | 0 | Direct |
47220,47220 47220 - alpha-catenin/vinculin-like 47220 - alpha-catenin/vinculin-like | 0 | Direct |
54768,54768 54768 - dsRNA-binding domain-like 54768 - dsRNA-binding domain-like | 0 | Direct |
52777,52777 52777 - CoA-dependent acyltransferases 52777 - CoA-dependent acyltransferases | 0 | Direct |
53223,51735 53223 - Aminoacid dehydrogenase-like, N-terminal domain 51735 - NAD(P)-binding Rossmann-fold domains | 0 | Direct |
48403,48403 48403 - Ankyrin repeat 48403 - Ankyrin repeat | 0 | Direct |
46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | Direct |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1423 | Inherited |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.2022 | Inherited |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.2236 | Inherited |
49562,49562 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0.3703 | Inherited |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0.3703 | Inherited |
50978,50978 50978 - WD40 repeat-like 50978 - WD40 repeat-like | 0.3908 | Inherited |
49313,49313 49313 - Cadherin-like 49313 - Cadherin-like | 0.3908 | Inherited |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.4697 | Inherited |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.5648 | Inherited |
47954,47954 47954 - Cyclin-like 47954 - Cyclin-like | 0.7023 | Inherited |
47473,47473 47473 - EF-hand 47473 - EF-hand | 0.768 | Inherited |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0.7723 | Inherited |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.8491 | Inherited |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | Inherited |
(show details)
Supra-domains annotated to this FA term (Not in SPFA)
Highlighted in gray are those with FDR>0.001
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57196,49899,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57850,57850,57850 57850 - RING/U-box 57850 - RING/U-box 57850 - RING/U-box | 0 | DIRECT |
52540,52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
48452,48452,48452 48452 - TPR-like 48452 - TPR-like 48452 - TPR-like | 0 | DIRECT |
74788,75632,46785 74788 - Cullin repeat-like 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
46966,46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | DIRECT |
52540,50447,50465 52540 - P-loop containing nucleoside triphosphate hydrolases 50447 - Translation proteins 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0 | DIRECT |
49899,49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57716,57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | DIRECT |
81660,56784,81665 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like 81665 - Calcium ATPase, transmembrane domain M | 0 | DIRECT |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0 | DIRECT |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.04857 | INHERITED FROM: sensory organ cell || head mesoderm derived embryonic hemocyte || photoreceptor cell R6 || sensory neuron || somatic cell of testis || tertiary pigment cell || embryonic/larval somatic muscle || embryonic/larval hypodermal muscle || pericardial cell || secondary pigment cell || eye photoreceptor cell stalk || photoreceptor cell R1 || glial cell || hub cell || embryonic hemocyte || adult optic lobe neuron || nephrocyte || embryonic/larval pericardial cell || histaminergic neuron || rhabdomeric photoreceptor cell |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.3341 | INHERITED FROM: giant fiber neuron || mechanosensory neuron || s-LNv neuron || eo neuron || embryonic heart cardioblast || chemosensory system neuron || neuropil associated CNS glial cell || pacemaker neuron || LNv neuron || mechanosensory system neuron || adult pacemaker neuron || adult descending neuron || chemosensory neuron || leg taste bristle chemosensory neuron || gustatory receptor neuron |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.3908 | INHERITED FROM: photoreceptor cell R4 || outer photoreceptor cell |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.4568 | INHERITED FROM: embryonic/larval garland cell || s-LNv neuron || embryonic heart cardioblast || pacemaker neuron || LNv neuron || adult pacemaker neuron || adult descending neuron || leg taste bristle chemosensory neuron || interommatidial precursor cell || embryonic cardioblast || gustatory receptor neuron |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | INHERITED FROM: embryonic ganglion mother cell |
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57196,49899,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57850,57850,57850 57850 - RING/U-box 57850 - RING/U-box 57850 - RING/U-box | 0 | Direct |
52540,52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
48452,48452,48452 48452 - TPR-like 48452 - TPR-like 48452 - TPR-like | 0 | Direct |
74788,75632,46785 74788 - Cullin repeat-like 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
46966,46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | Direct |
52540,50447,50465 52540 - P-loop containing nucleoside triphosphate hydrolases 50447 - Translation proteins 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0 | Direct |
49899,49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57716,57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | Direct |
81660,56784,81665 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like 81665 - Calcium ATPase, transmembrane domain M | 0 | Direct |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0 | Direct |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.04857 | Inherited |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.3341 | Inherited |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.3908 | Inherited |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.4568 | Inherited |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | Inherited |
Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
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