SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Neoplasm by histology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Phenotypic abnormality [HP:0000118] <25>
+ 1:   Neoplasm [HP:0002664] <2>(20|21) (23|8|3)
0:   Neoplasm by histology [HP:0011792] <7>(5|7) (6|3|0)
- 1:   Hamartoma [HP:0010566] <10>(0|0) (0|0|0)
- 1:   Embryonal neoplasm [HP:0002898] <5>(0|0) (0|0|0)
- 1:   Sarcoma [HP:0100242] <5>(0|1) (1|0|0)
- 1:   Fibrous tissue neoplasm [HP:0012316] <3>(0|0) (0|0|0)
- 1:   Epithelial neoplasm [HP:0031492] <2>(0|0) (0|0|0)
- 1:   Melanoma [HP:0002861] <2>(1|1) (1|0|0)
- 1:   Nervous tissue neoplasm [HP:0030060] <1>(3|6) (3|2|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.000482Direct
DNA/RNA polymerases0.0005915Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.03249Inherited
BRCT domain0.06598Inherited
Ribosomal protein S5 domain 2-like0.2355Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0003289Direct
Ras-binding domain, RBD0.002975Inherited
Ran binding protein zinc finger-like0.009402Inherited
DNA gyrase/MutL, second domain0.02619Inherited
DNA gyrase/MutL, N-terminal domain0.02619Inherited
FHA domain0.05599Inherited
ABC transporter ATPase domain-like0.2199Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DNA repair protein MutS, domain III0.0002429Direct
DNA/RNA polymerases0.0003021Direct
Ran binding protein zinc finger-like0.007638Inherited
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.02294Inherited
BRCT domain0.04996Inherited
Ribosomal protein S5 domain 2-like0.1998Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0002429Direct
    50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0.0002429Direct
    55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.02294Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)