SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Aplasia/hypoplasia involving bones of the extremities

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Abnormality of the skeletal system [HP:0000924] <7>(88|98) (93|55|34)
+ + + 3:   Abnormality of skeletal morphology [HP:0011842] <17>(86|89) (90|52|33)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Abnormality of limbs [HP:0040064] <8>(58|66) (63|33|25)
+ + 2:   Abnormality of limb bone [HP:0040068] <1>(29|32) (33|18|20)
+ + 2:   Aplasia/hypoplasia involving the skeleton [HP:0009115] <2>(13|12) (15|10|17)
+ + 2:   Abnormal appendicular skeleton morphology [HP:0011844] <4>(35|43) (39|23|23)
+ 1:   Aplasia/hypoplasia of the extremities [HP:0009815] <6>(8|10) (10|3|5)
+ 1:   Abnormality of limb bone morphology [HP:0002813] <13>(29|32) (32|18|20)
0:   Aplasia/hypoplasia involving bones of the extremities [HP:0045060] <3>(7|9) (9|3|5)
- 1:   Aplasia/hypoplasia involving bones of the lower limbs [HP:0006493] <10>(5|5) (6|3|4)
- 1:   Aplasia/hypoplasia involving bones of the upper limbs [HP:0006496] <8>(3|8) (6|2|4)
- 1:   Aplasia involving bones of the extremities [HP:0009825] <2>(0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
ARID-like0.002232Inherited
Arginase/deacetylase0.003151Inherited
BRK domain-like0.003151Inherited
Multidrug efflux transporter AcrB transmembrane domain0.009999Inherited
HMG-box0.01774Inherited
p53-like transcription factors0.04168Inherited
Immunoglobulin0.6946Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Histone deacetylase, HDAC0Direct
ARID domain0.001307Inherited
BRK domain-like0.001878Inherited
HMG-box0.01206Inherited
RecA protein-like (ATPase-domain)0.01898Inherited
Notch domain0.08519Inherited
Homeodomain0.4888Inherited
I set domains0.5559Inherited
Transforming growth factor (TGF)-beta0.6203Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ARID-like0.001263Inherited
BRK domain-like0.001831Inherited
Arginase/deacetylase0.001831Inherited
Multidrug efflux transporter AcrB transmembrane domain0.006427Inherited
HMG-box0.01192Inherited
p53-like transcription factors0.03006Inherited
Notch domain0.07917Inherited
Cystine-knot cytokines0.4752Inherited
Immunoglobulin0.6557Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.001263Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.1377Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.8282Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.001263Inherited
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.06461Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.07963Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.7832Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)