SUPERFAMILY 1.75 HMM library and genome assignments server

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Mammalian Phenotype (MP): normal phenotype

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   mammalian phenotype [MP:0000001] <29>
0:   normal phenotype [MP:0002873] <2>(8|12) (8|4|5)
- 1:   phenotypic reversion [MP:0003171] <3>(0|0) (0|0|0)
- 1:   no abnormal phenotype detected [MP:0002169](7|11) (7|4|5)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cytidine deaminase-like0Direct
Homeodomain-like0.000007996Direct
Protein kinase-like (PK-like)0.00002542Direct
HLH, helix-loop-helix DNA-binding domain0.0000394Direct
p53-like transcription factors0.00006751Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001539Direct
Nuclear receptor ligand-binding domain0.0002421Direct
Inhibitor of apoptosis (IAP) repeat0.0005167Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
ENTH domain0Direct
Retinoblastoma tumor suppressor domains0Direct
Inhibitor of apoptosis (IAP) repeat0Direct
GRAM domain0Direct
Protein kinases, catalytic subunit0.00005181Direct
HLH, helix-loop-helix DNA-binding domain0.00005712Direct
Homeodomain0.0000788Direct
Nuclear receptor ligand-binding domain0.0002535Direct
Nuclear receptor0.0003497Direct
Linker histone H1/H50.0005651Direct
Cell cycle transcription factor e2f-dp0.0005651Direct
Paired domain0.0005651Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cytidine deaminase-like0Direct
Homeodomain-like0.00000347Direct
Protein kinase-like (PK-like)0.00001156Direct
HLH, helix-loop-helix DNA-binding domain0.00001823Direct
p53-like transcription factors0.00003204Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00007686Direct
Nuclear receptor ligand-binding domain0.000123Direct
Inhibitor of apoptosis (IAP) repeat0.0002731Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57196,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 0Direct
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.0001557Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    63825,57196,57424
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,90193,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57196,57424,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.0009823Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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