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Mammalian Phenotype (MP): limbs/digits/tail phenotype

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   mammalian phenotype [MP:0000001] <29>
0:   limbs/digits/tail phenotype [MP:0005371] <2>(18|26) (22|21|17)
- 1:   abnormal tail morphology [MP:0002111] <18>(1|3) (2|4|1)
- 1:   abnormal limb morphology [MP:0002109] <13>(12|21) (15|17|16)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000000001521Direct
Growth factor receptor domain0.0000000347Direct
FnI-like domain0.00001884Direct
p53-like transcription factors0.00005772Direct
EGF/Laminin0.0001104Direct
Frizzled cysteine-rich domain0.000236Direct
TSP type-3 repeat0.0003795Direct
TIMP-like0.000599Direct
Kringle-like0.01367Inherited
YWTD domain0.01815Inherited
Cystine-knot cytokines0.02926Inherited
Cytokine0.03832Inherited
CalX-like0.03953Inherited
Metalloproteases ("zincins"), catalytic domain0.06611Inherited
PGBD-like0.1285Inherited
Intermediate filament protein, coiled coil region0.1627Inherited
Integrin domains0.2765Inherited
SAM/Pointed domain0.8409Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
Homeodomain0.00000001073Direct
Growth factor receptor domain0.000001367Direct
VWC domain0.00002309Direct
Frizzled cysteine-rich domain0.0001482Direct
Thrombospondin C-terminal domain0.0002303Direct
TSP type-3 repeat0.0002303Direct
T-box0.0003416Direct
DIX domain0.0009488Direct
HMG-box0.005253Inherited
Transforming growth factor (TGF)-beta0.009929Inherited
Fibroblast growth factors (FGF)0.01011Inherited
Prohormone convertase 1 pro-domain0.01075Inherited
Proprotein convertase P-domain0.01075Inherited
Ovomucoid domain III-like0.01192Inherited
YWTD domain0.01344Inherited
CalX-beta domain0.02993Inherited
Linker histone H1/H50.04345Inherited
Kringle modules0.04921Inherited
Hemopexin-like domain0.07048Inherited
MMP N-terminal domain0.1078Inherited
Matrix metalloproteases, catalytic domain0.1254Inherited
Intermediate filament protein, coiled coil region0.1414Inherited
Reprolysin-like0.2117Inherited
SAM (sterile alpha motif) domain0.23Inherited
Integrin domains0.2488Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0000000005661Direct
Growth factor receptor domain0.00000001333Direct
FnI-like domain0.000008385Direct
p53-like transcription factors0.00002716Direct
EGF/Laminin0.00005379Direct
Frizzled cysteine-rich domain0.0001197Direct
TSP type-3 repeat0.0001976Direct
TIMP-like0.0003179Direct
HMG-box0.004361Inherited
Kringle-like0.00874Inherited
YWTD domain0.01184Inherited
Cystine-knot cytokines0.01986Inherited
Cytokine0.02651Inherited
CalX-like0.0274Inherited
LDL receptor-like module0.02866Inherited
Metalloproteases ("zincins"), catalytic domain0.04808Inherited
Hemopexin-like domain0.06425Inherited
WD40 repeat-like0.07821Inherited
PGBD-like0.09981Inherited
Intermediate filament protein, coiled coil region0.1298Inherited
Integrin domains0.2346Inherited
SAM/Pointed domain0.8092Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57196,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0Direct
    103647,49899
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.0001976Direct
    103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0.0001976Direct
    57196,63825
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.0008286Direct
    55550,55550
  • 55550 - SH2 domain
  • 55550 - SH2 domain
  • 0.0008286Direct
    63825,57196
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.0009971Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001067Inherited
    57603,82895
  • 57603 - FnI-like domain
  • 82895 - TSP-1 type 1 repeat
  • 0.001267Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.001652Inherited
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.002145Inherited
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.009626Inherited
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.009626Inherited
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.01224Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.01376Inherited
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0.02573Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.0274Inherited
    55486,82895
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 82895 - TSP-1 type 1 repeat
  • 0.03449Inherited
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0.09981Inherited
    49899,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.1464Inherited
    55486,50923
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.1789Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    63825,57196,57424
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,57424,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    63825,57196,63825
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.00002825Direct
    103647,103647,49899
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.0001976Direct
    103647,103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0.0001976Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0006515Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0008286Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.0008286Direct
    57196,57581,57184
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0.001267Inherited
    57184,57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.002145Inherited
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.009626Inherited
    54897,52743,49785
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.009626Inherited
    57184,57196,57184
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.009626Inherited
    57196,57184,57196
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.01829Inherited
    47090,55486,50923
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.1551Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.2374Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4378Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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