SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Mammalian Phenotype (MP): abnormal axial skeleton morphology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   mammalian phenotype [MP:0000001] <29>
+ + 2:   skeleton phenotype [MP:0005390] <2>(46|63) (50|41|26)
+ 1:   abnormal skeleton morphology [MP:0005508] <15>(41|59) (47|38|25)
0:   abnormal axial skeleton morphology [MP:0002114] <4>(24|40) (25|21|14)
- 1:   abnormal vertebral column morphology [MP:0004703] <9>(14|16) (15|11|5)
- 1:   abnormal thoracic cage morphology [MP:0004624] <8>(6|9) (8|4|1)
- 1:   abnormal craniofacial bone morphology [MP:0002116] <3>(16|25) (16|13|7)
- 1:   axial skeleton hypoplasia [MP:0000071](0|1) (0|1|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
p53 tetramerization domain0Direct
Homeodomain-like0.000003446Direct
Clc chloride channel0.01721Inherited
Cystine-knot cytokines0.03705Inherited
FnI-like domain0.08483Inherited
Glycosyl hydrolase domain0.1018Inherited
Bromodomain0.1363Inherited
Transducin (alpha subunit), insertion domain0.1493Inherited
SCOP hierarchy in SUPERFAMILY0.1971Inherited
HMG-box0.2117Inherited
EGF/Laminin0.2424Inherited
TB module/8-cys domain0.2594Inherited
Kazal-type serine protease inhibitors0.2667Inherited
p53-like transcription factors0.2956Inherited
Growth factor receptor domain0.3141Inherited
PGBD-like0.4059Inherited
Metalloproteases ("zincins"), catalytic domain0.4198Inherited
(Trans)glycosidases0.5284Inherited
Nuclear receptor ligand-binding domain0.5911Inherited
Hemopexin-like domain0.5972Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.6155Inherited
lambda repressor-like DNA-binding domains0.6864Inherited
4-helical cytokines0.8803Inherited
TIMP-like0.9612Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
RUNT domain0Direct
p53 DNA-binding domain-like0Direct
Clathrin adaptor appendage, alpha and beta chain-specific domain0Direct
p53 tetramerization domain0Direct
Alpha-adaptin ear subdomain-like0Direct
Homeodomain0.0000006197Direct
Paired domain0.00002944Direct
DIX domain0.0001409Direct
Notch domain0.0007178Direct
Extracellular domain of cell surface receptors0.001105Inherited
MBT repeat0.0028Inherited
Laminin-type module0.003199Inherited
Clc chloride channel0.01324Inherited
Neutral endopeptidase (neprilysin)0.04016Inherited
VWC domain0.07104Inherited
Transforming growth factor (TGF)-beta0.08103Inherited
Laminin G-like module0.09329Inherited
Bromodomain0.1196Inherited
Transducin (alpha subunit), insertion domain0.1292Inherited
I set domains0.1414Inherited
Arylsulfatase0.1737Inherited
EF-hand modules in multidomain proteins0.1841Inherited
HMG-box0.1928Inherited
TB module/8-cys domain0.2328Inherited
Forkhead DNA-binding domain0.2356Inherited
DEATH domain, DD0.2436Inherited
Growth factor receptor domain0.283Inherited
SAM (sterile alpha motif) domain0.3015Inherited
TNF receptor-like0.306Inherited
HLH, helix-loop-helix DNA-binding domain0.3192Inherited
Matrix metalloproteases, catalytic domain0.3805Inherited
Rel/Dorsal transcription factors, DNA-binding domain0.3805Inherited
MMP N-terminal domain0.3805Inherited
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain0.3805Inherited
G proteins0.3986Inherited
T-box0.4151Inherited
Hemopexin-like domain0.5759Inherited
Nuclear receptor ligand-binding domain0.5769Inherited
Nuclear receptor0.5769Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
p53 tetramerization domain0Direct
Homeodomain-like0.000001463Direct
Notch domain0.0005855Direct
Clc chloride channel0.0112Inherited
Cystine-knot cytokines0.02557Inherited
FnI-like domain0.06299Inherited
Glycosyl hydrolase domain0.07705Inherited
Bromodomain0.1068Inherited
Transducin (alpha subunit), insertion domain0.1181Inherited
HMG-box0.174Inherited
EGF/Laminin0.2028Inherited
TB module/8-cys domain0.2185Inherited
Kazal-type serine protease inhibitors0.2254Inherited
p53-like transcription factors0.2526Inherited
Growth factor receptor domain0.2701Inherited
HLH, helix-loop-helix DNA-binding domain0.2826Inherited
PGBD-like0.359Inherited
Metalloproteases ("zincins"), catalytic domain0.373Inherited
(Trans)glycosidases0.4812Inherited
Nuclear receptor ligand-binding domain0.5451Inherited
Hemopexin-like domain0.5517Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.5703Inherited
lambda repressor-like DNA-binding domains0.6448Inherited
4-helical cytokines0.8518Inherited
TIMP-like0.9412Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57196,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    49417,47719
  • 49417 - p53-like transcription factors
  • 47719 - p53 tetramerization domain
  • 0Direct
    57196,63825
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.002312Inherited
    57603,82895
  • 57603 - FnI-like domain
  • 82895 - TSP-1 type 1 repeat
  • 0.002944Inherited
    47473,57850
  • 47473 - EF-hand
  • 57850 - RING/U-box
  • 0.009563Inherited
    63748,63748
  • 63748 - Tudor/PWWP/MBT
  • 63748 - Tudor/PWWP/MBT
  • 0.02934Inherited
    51445,51011
  • 51445 - (Trans)glycosidases
  • 51011 - Glycosyl hydrolase domain
  • 0.07705Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.08739Inherited
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.1028Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1607Inherited
    49899,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 0.1607Inherited
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.2185Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.2641Inherited
    57581,57196
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 0.2964Inherited
    57196,57581
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0.2964Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.3523Inherited
    47090,55486
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 0.359Inherited
    49417,81296
  • 49417 - p53-like transcription factors
  • 81296 - E set domains
  • 0.359Inherited
    57184,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.4075Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.4478Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.5476Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    63825,57196,57424
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,57424,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    63825,57196,63825
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.0001104Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0009292Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.002312Inherited
    47473,47473,57850
  • 47473 - EF-hand
  • 47473 - EF-hand
  • 57850 - RING/U-box
  • 0.009563Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0693Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.08643Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.08643Inherited
    57184,57196,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.08643Inherited
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.2964Inherited
    57581,57196,57196
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.2964Inherited
    57196,57196,57581
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0.2964Inherited
    52540,52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2964Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)