SUPERFAMILY 1.75 HMM library and genome assignments server

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Mammalian Phenotype (MP): abnormal gut-associated lymphoid tissue morphology

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   mammalian phenotype [MP:0000001] <29>
+ + + 3:   immune system phenotype [MP:0005387] <2>(76|114) (86|66|35)
+ + 2:   abnormal immune system morphology [MP:0000685] <3>(50|76) (60|35|18)
+ 1:   abnormal immune system organ morphology [MP:0002722] <8>(21|31) (26|15|9)
0:   abnormal gut-associated lymphoid tissue morphology [MP:0002378] <1>(6|7) (6|2|0)
- 1:   abnormal Peyer's patch morphology [MP:0000696] <5>(6|7) (6|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
TNF receptor-like0.0004288Direct
DEATH domain0.0007688Direct
TNF-like0.003127Inherited
p53-like transcription factors0.00588Inherited
Integrin domains0.02299Inherited
Ankyrin repeat0.08008Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
TNF receptor-like0.00105Inherited
DEATH domain, DD0.002724Inherited
TNF-like0.002724Inherited
Rel/Dorsal transcription factors, DNA-binding domain0.01335Inherited
Integrin domains0.01988Inherited
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain0.01988Inherited
Ankyrin repeat0.07613Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
TNF receptor-like0.0002248Direct
DEATH domain0.0004135Direct
TNF-like0.001818Inherited
p53-like transcription factors0.003545Inherited
Integrin domains0.01526Inherited
Ankyrin repeat0.05912Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57586,57586
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 0.00113Inherited
    49417,81296
  • 49417 - p53-like transcription factors
  • 81296 - E set domains
  • 0.01016Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)