SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Mammalian Phenotype (MP): abnormal adaptive immunity

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   mammalian phenotype [MP:0000001] <29>
+ + 2:   immune system phenotype [MP:0005387] <2>(76|114) (86|66|35)
+ 1:   abnormal immune system physiology [MP:0001790] <16>(59|84) (66|49|28)
0:   abnormal adaptive immunity [MP:0002420] <8>(36|48) (38|33|21)
- 1:   abnormal leukocyte physiology [MP:0002442] <5>(34|48) (36|33|20)
- 1:   abnormal professional antigen presenting cell physiology [MP:0002452] <3>(25|32) (26|19|12)
- 1:   abnormal type I hypersensitivity reaction [MP:0002531] <2>(1|1) (1|0|0)
- 1:   abnormal type II hypersensitivity reaction [MP:0002532] <2>(0|0) (0|0|0)
- 1:   abnormal type III hypersensitivity reaction [MP:0002533] <2>(0|0) (0|0|0)
- 1:   abnormal type IV hypersensitivity reaction [MP:0002534] <2>(0|1) (0|0|0)
- 1:   abnormal class switch recombination [MP:0004816](1|1) (1|0|0)
- 1:   abnormal somatic hypermutation frequency [MP:0004815](1|0) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nitric oxide (NO) synthase oxygenase domain0Direct
STAT0Direct
Transcription factor STAT-4 N-domain0Direct
SH2 domain0.0001026Direct
Immunoglobulin0.0001076Direct
DEATH domain0.0003064Direct
SH3-domain0.0003528Direct
p53-like transcription factors0.00444Inherited
DBL homology domain (DH-domain)0.02143Inherited
Toll/Interleukin receptor TIR domain0.03882Inherited
TNF receptor-like0.04098Inherited
Caspase-like0.06539Inherited
MHC antigen-recognition domain0.06816Inherited
Flavoproteins0.08027Inherited
L30e-like0.1155Inherited
Interleukin 8-like chemokines0.1192Inherited
Bcl-2 inhibitors of programmed cell death0.1521Inherited
Cysteine-rich domain0.1678Inherited
Inhibitor of apoptosis (IAP) repeat0.2002Inherited
DNA/RNA polymerases0.2002Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.2627Inherited
4-helical cytokines0.3045Inherited
E set domains0.3176Inherited
Integrin domains0.3424Inherited
WWE domain0.3451Inherited
TNF-like0.3783Inherited
Family A G protein-coupled receptor-like0.3791Inherited
Integrin beta tail domain0.5002Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.5043Inherited
Integrin alpha N-terminal domain0.53Inherited
C-type lectin-like0.6469Inherited
SMAD/FHA domain0.6598Inherited
Complement control module/SCR domain0.7785Inherited
vWA-like0.8286Inherited
EGF/Laminin1Inherited
L domain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Proteasome subunits0Direct
Nitric oxide (NO) synthase oxygenase domain0Direct
STAT DNA-binding domain0Direct
STAT0Direct
Cysteine rich domain0Direct
Transcription factor STAT-4 N-domain0Direct
Rel/Dorsal transcription factors, DNA-binding domain0.0000007548Direct
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain0.00002096Direct
SH2 domain0.00005044Direct
Pyrin domain, PYD0.00008394Direct
SH3-domain0.0001839Direct
Inhibitor of apoptosis (IAP) repeat0.000371Direct
28-residue LRR0.0008434Direct
Pleckstrin-homology domain (PH domain)0.00124Inherited
Cytochrome p450 reductase N-terminal domain-like0.006302Inherited
C1 set domains (antibody constant domain-like)0.006917Inherited
V set domains (antibody variable domain-like)0.01004Inherited
DBL homology domain (DH-domain)0.01871Inherited
NADPH-cytochrome p450 reductase-like0.01943Inherited
NADPH-cytochrome p450 reductase FAD-binding domain-like0.01943Inherited
Caspase recruitment domain, CARD0.0255Inherited
Toll/Interleukin receptor TIR domain0.03518Inherited
TNF receptor-like0.05067Inherited
MHC antigen-recognition domain0.05067Inherited
PLC-like (P variant)0.0578Inherited
Caspase catalytic domain0.06622Inherited
DEATH domain, DD0.09311Inherited
Interleukin 8-like chemokines0.09311Inherited
ets domain0.09854Inherited
I set domains0.1052Inherited
Short-chain cytokines0.1116Inherited
Bcl-2 inhibitors of programmed cell death0.1228Inherited
Rhodopsin-like0.2097Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain0.2324Inherited
Interferon regulatory factor0.2936Inherited
Integrin domains0.2995Inherited
WWE domain0.3038Inherited
C-type lectin domain0.3129Inherited
TNF-like0.3345Inherited
Integrin alpha N-terminal domain0.3992Inherited
FHA domain0.4383Inherited
Interferon regulatory factor 3 (IRF3), transactivation domain0.4573Inherited
Integrin beta EGF-like domains0.4573Inherited
Integrin beta tail domain0.4573Inherited
Interleukin 17F, IL-17F0.5606Inherited
Integrin A (or I) domain0.6821Inherited
Complement control module/SCR domain0.744Inherited
EGF-type module0.9649Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nitric oxide (NO) synthase oxygenase domain0Direct
STAT0Direct
Transcription factor STAT-4 N-domain0Direct
SH2 domain0.0000497Direct
Immunoglobulin0.00005227Direct
DEATH domain0.0001578Direct
SH3-domain0.0001835Direct
p53-like transcription factors0.002629Inherited
DBL homology domain (DH-domain)0.01414Inherited
Toll/Interleukin receptor TIR domain0.02686Inherited
TNF receptor-like0.02849Inherited
Caspase-like0.04749Inherited
MHC antigen-recognition domain0.04971Inherited
Flavoproteins0.05927Inherited
L30e-like0.08873Inherited
Interleukin 8-like chemokines0.09188Inherited
Bcl-2 inhibitors of programmed cell death0.1206Inherited
Cysteine-rich domain0.1342Inherited
RNI-like0.1403Inherited
Inhibitor of apoptosis (IAP) repeat0.1635Inherited
DNA/RNA polymerases0.1635Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.2215Inherited
4-helical cytokines0.2611Inherited
E set domains0.2735Inherited
Transducin (alpha subunit), insertion domain0.2905Inherited
Integrin domains0.2971Inherited
WWE domain0.2997Inherited
TNF-like0.3322Inherited
Family A G protein-coupled receptor-like0.3331Inherited
Integrin beta tail domain0.4525Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.4567Inherited
Integrin alpha N-terminal domain0.4828Inherited
C-type lectin-like0.6033Inherited
SMAD/FHA domain0.6169Inherited
Complement control module/SCR domain0.7421Inherited
vWA-like0.796Inherited
L domain-like0.9898Inherited
EGF/Laminin0.9932Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47655,49417
  • 47655 - STAT
  • 49417 - p53-like transcription factors
  • 0Direct
    49417,55550
  • 49417 - p53-like transcription factors
  • 55550 - SH2 domain
  • 0Direct
    49562,57889
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 57889 - Cysteine-rich domain
  • 0Direct
    50370,57440
  • 50370 - Ricin B-like lectins
  • 57440 - Kringle-like
  • 0Direct
    48366,47473
  • 48366 - Ras GEF
  • 47473 - EF-hand
  • 0Direct
    57440,56436
  • 57440 - Kringle-like
  • 56436 - C-type lectin-like
  • 0Direct
    48092,47655
  • 48092 - Transcription factor STAT-4 N-domain
  • 47655 - STAT
  • 0Direct
    47576,48065
  • 47576 - Calponin-homology domain, CH-domain
  • 48065 - DBL homology domain (DH-domain)
  • 0Direct
    49417,81296
  • 49417 - p53-like transcription factors
  • 81296 - E set domains
  • 0.0000004832Direct
    47986,47986
  • 47986 - DEATH domain
  • 47986 - DEATH domain
  • 0.0003Direct
    47986,52540
  • 47986 - DEATH domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0003402Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.003979Inherited
    57603,82895
  • 57603 - FnI-like domain
  • 82895 - TSP-1 type 1 repeat
  • 0.005435Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0161Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.02094Inherited
    54452,48726
  • 54452 - MHC antigen-recognition domain
  • 48726 - Immunoglobulin
  • 0.025Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.02849Inherited
    50729,55550
  • 50729 - PH domain-like
  • 55550 - SH2 domain
  • 0.03505Inherited
    57586,57586
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 0.1098Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1206Inherited
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.1206Inherited
    47986,52129
  • 47986 - DEATH domain
  • 52129 - Caspase-like
  • 0.1635Inherited
    55550,55550
  • 55550 - SH2 domain
  • 55550 - SH2 domain
  • 0.1635Inherited
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.1635Inherited
    53300,69179
  • 53300 - vWA-like
  • 69179 - Integrin domains
  • 0.2215Inherited
    53300,69318
  • 53300 - vWA-like
  • 69318 - Integrin alpha N-terminal domain
  • 0.2215Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.2674Inherited
    57924,57924
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 0.2997Inherited
    69179,69179
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.3957Inherited
    69318,69179
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 0.3957Inherited
    57440,50494
  • 57440 - Kringle-like
  • 50494 - Trypsin-like serine proteases
  • 0.4525Inherited
    57196,69687
  • 57196 - EGF/Laminin
  • 69687 - Integrin beta tail domain
  • 0.4525Inherited
    57535,57535
  • 57535 - Complement control module/SCR domain
  • 57535 - Complement control module/SCR domain
  • 0.6358Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50370,57440,56436
  • 50370 - Ricin B-like lectins
  • 57440 - Kringle-like
  • 56436 - C-type lectin-like
  • 0Direct
    57440,56436,56436
  • 57440 - Kringle-like
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0Direct
    57850,49599,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 49599 - TRAF domain-like
  • 0Direct
    48366,47473,57889
  • 48366 - Ras GEF
  • 47473 - EF-hand
  • 57889 - Cysteine-rich domain
  • 0Direct
    48092,47655,49417
  • 48092 - Transcription factor STAT-4 N-domain
  • 47655 - STAT
  • 49417 - p53-like transcription factors
  • 0Direct
    47576,48065,50729
  • 47576 - Calponin-homology domain, CH-domain
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0Direct
    49562,57889,57889
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0Direct
    50044,55550,50044
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0Direct
    47655,49417,55550
  • 47655 - STAT
  • 49417 - p53-like transcription factors
  • 55550 - SH2 domain
  • 0Direct
    50729,50044,55550
  • 50729 - PH domain-like
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0Direct
    50729,55550,56112
  • 50729 - PH domain-like
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.005435Inherited
    55550,56112,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 56112 - Protein kinase-like (PK-like)
  • 0.005435Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.025Inherited
    49265,49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.02952Inherited
    53300,69318,69179
  • 53300 - vWA-like
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 0.2215Inherited
    57586,57586,57586
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 0.2215Inherited
    57440,57440,50494
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 50494 - Trypsin-like serine proteases
  • 0.2997Inherited
    57924,57924,57924
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 57924 - Inhibitor of apoptosis (IAP) repeat
  • 0.2997Inherited
    69318,69179,69179
  • 69318 - Integrin alpha N-terminal domain
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.3957Inherited
    57196,57196,69687
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 69687 - Integrin beta tail domain
  • 0.4525Inherited
    69179,69179,69179
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 69179 - Integrin domains
  • 0.4728Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)