SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Mammalian Phenotype (MP): abnormal neuron morphology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   mammalian phenotype [MP:0000001] <29>
+ + 2:   nervous system phenotype [MP:0003631] <2>(98|127) (112|79|50)
+ 1:   abnormal nervous system morphology [MP:0003632] <17>(76|104) (91|64|47)
0:   abnormal neuron morphology [MP:0002882] <29>(36|59) (40|26|19)
- 1:   abnormal sensory neuron morphology [MP:0000965] <16>(16|28) (19|14|9)
- 1:   abnormal neuron differentiation [MP:0009937] <8>(8|11) (8|2|1)
- 1:   ectopic neuron [MP:0011723] <8>(4|5) (5|2|2)
- 1:   neuron degeneration [MP:0003224] <8>(3|3) (3|3|1)
- 1:   abnormal synapse morphology [MP:0009538] <7>(3|6) (3|2|2)
- 1:   abnormal Purkinje cell morphology [MP:0000877] <5>(0|1) (1|0|0)
- 1:   abnormal neuroendocrine cell morphology [MP:0010913] <5>(0|1) (1|0|0)
- 1:   abnormal cerebral cortex pyramidal cell morphology [MP:0009969] <4>(0|0) (0|0|0)
- 1:   abnormal dopaminergic neuron morphology [MP:0003243] <4>(0|0) (0|0|0)
- 1:   abnormal hippocampus neuron morphology [MP:0009939] <4>(2|2) (2|2|1)
- 1:   abnormal motor neuron morphology [MP:0000937] <4>(1|1) (1|0|0)
- 1:   abnormal Cajal-Retzius cell morphology [MP:0008030] <3>(1|1) (1|0|0)
- 1:   abnormal neuron number [MP:0008946] <3>(8|16) (9|9|8)
- 1:   abnormal enteric neuron morphology [MP:0001046] <2>(0|1) (0|0|0)
- 1:   abnormal neurite morphology [MP:0008415] <2>(4|9) (4|3|1)
- 1:   abnormal GABAergic neuron morphology [MP:0003245] <1>(1|1) (1|0|0)
- 1:   abnormal cholinergic neuron morphology [MP:0001038] <1>(0|0) (0|0|0)
- 1:   abnormal glutaminergic neuron morphology [MP:0003247] <1>(0|0) (0|0|0)
- 1:   abnormal adrenergic neuron morphology [MP:0001026](0|0) (0|0|0)
- 1:   abnormal glycinergic neuron morphology [MP:0010385](0|0) (0|0|0)
- 1:   abnormal medium spiny neuron morphology [MP:0008462](0|0) (0|0|0)
- 1:   abnormal neuron specification [MP:0002948](0|0) (1|0|0)
- 1:   abnormal peptidergic neuron morphology [MP:0001032](0|0) (0|0|0)
- 1:   abnormal serotonergic neuron morphology [MP:0003877](0|1) (1|0|0)
- 1:   abnormal thalamus neuron morphology [MP:0010369](0|0) (0|0|0)
- 1:   chromatolysis [MP:0002883](0|0) (0|0|0)
- 1:   neuron hypertrophy [MP:0005603](0|0) (0|0|0)
- 1:   neuronal cytoplasmic inclusions [MP:0011975](0|0) (0|0|0)
- 1:   neuronal intranuclear inclusions [MP:0004191](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nitric oxide (NO) synthase oxygenase domain0Direct
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0Direct
Tubby C-terminal domain-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
Lamin A/C globular tail domain0Direct
Plexin repeat0.0009602Direct
Sema domain0.003047Inherited
Proton glutamate symport protein0.009301Inherited
Spectrin repeat0.01926Inherited
GTPase activation domain, GAP0.02914Inherited
EGF/Laminin0.03634Inherited
Nicotinic receptor ligand binding domain-like0.05709Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.05709Inherited
HLH, helix-loop-helix DNA-binding domain0.1175Inherited
Fibronectin type III0.1183Inherited
Orange domain-like0.1855Inherited
Clc chloride channel0.1855Inherited
Cyclin-like0.1862Inherited
SAM/Pointed domain0.2365Inherited
GAF domain-like0.2609Inherited
Cap-Gly domain0.2609Inherited
Galactose-binding domain-like0.2892Inherited
Metallo-dependent hydrolases0.2921Inherited
lambda repressor-like DNA-binding domains0.2963Inherited
Homeodomain-like0.3356Inherited
SNARE fusion complex0.3801Inherited
CBS-domain pair0.3801Inherited
HD-domain/PDEase-like0.3947Inherited
BAR/IMD domain-like0.4513Inherited
Notch domain0.4883Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.5927Inherited
Family A G protein-coupled receptor-like0.7294Inherited
RNA-binding domain, RBD0.7546Inherited
HMG-box0.78Inherited
E2F-DP heterodimerization region0.8025Inherited
alpha/beta-Hydrolases1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
Lamin A/C globular tail domain0Direct
Nitric oxide (NO) synthase oxygenase domain0Direct
Other IPT/TIG domains0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Transcriptional factor tubby, C-terminal domain0Direct
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0Direct
Oligoxyloglucan reducing end-specific cellobiohydrolase0Direct
Synapsin domain0Direct
Neurotrophin0Direct
Synapsin C-terminal domain0Direct
Ephrin ectodomain0.0001033Direct
Plexin repeat0.0007211Direct
DEP domain0.001165Inherited
L domain0.001906Inherited
Sema domain0.002335Inherited
Laminin-type module0.004871Inherited
Proton glutamate symport protein0.007063Inherited
Spectrin repeat0.01046Inherited
SAM (sterile alpha motif) domain0.02308Inherited
I set domains0.03823Inherited
Nicotinic receptor ligand binding domain-like0.04889Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04889Inherited
Ephrin receptor ligand binding domain0.05256Inherited
EGF-type module0.08201Inherited
Adenylyl and guanylyl cyclase catalytic domain0.1106Inherited
Extracellular domain of cell surface receptors0.1121Inherited
HLH, helix-loop-helix DNA-binding domain0.1127Inherited
Fibronectin type III0.1162Inherited
POU-specific domain0.1491Inherited
Hairy Orange domain0.1621Inherited
Clc chloride channel0.1621Inherited
Enabled/VASP homology 1 domain (EVH1 domain)0.1621Inherited
Cyclin0.201Inherited
Calmodulin-like0.2301Inherited
p120GAP domain-like0.2336Inherited
Cap-Gly domain0.2336Inherited
GAF domain0.2336Inherited
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain0.2678Inherited
Homeodomain0.292Inherited
PLC-like (P variant)0.2944Inherited
PDEase0.3069Inherited
BAR domain0.3069Inherited
cAMP-binding domain0.3508Inherited
CBS-domain pair0.3544Inherited
SNARE fusion complex0.3544Inherited
Rel/Dorsal transcription factors, DNA-binding domain0.4612Inherited
DIX domain0.4612Inherited
Acetylcholinesterase-like0.4612Inherited
Notch domain0.4612Inherited
Transforming growth factor (TGF)-beta0.5172Inherited
Canonical RBD0.5556Inherited
Rhodopsin-like0.6461Inherited
E2F dimerization segment0.6491Inherited
HMG-box0.7677Inherited
Cell cycle transcription factor e2f-dp0.7861Inherited
Synaptotagmin-like (S variant)0.9244Inherited
Forkhead DNA-binding domain0.9695Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0Direct
Nitric oxide (NO) synthase oxygenase domain0Direct
Composite domain of metallo-dependent hydrolases0Direct
Lamin A/C globular tail domain0Direct
Tubby C-terminal domain-like0Direct
Plexin repeat0.0005228Direct
Sema domain0.001767Inherited
Proton glutamate symport protein0.005787Inherited
Spectrin repeat0.01261Inherited
GTPase activation domain, GAP0.01976Inherited
EGF/Laminin0.02502Inherited
L domain-like0.03002Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04089Inherited
Nicotinic receptor ligand binding domain-like0.04089Inherited
HLH, helix-loop-helix DNA-binding domain0.09049Inherited
Fibronectin type III0.09118Inherited
Nucleotide cyclase0.0917Inherited
Clc chloride channel0.1502Inherited
Orange domain-like0.1502Inherited
Cyclin-like0.1509Inherited
SAM/Pointed domain0.1972Inherited
GAF domain-like0.2198Inherited
Cap-Gly domain0.2198Inherited
Galactose-binding domain-like0.2466Inherited
Metallo-dependent hydrolases0.2493Inherited
lambda repressor-like DNA-binding domains0.2532Inherited
Homeodomain-like0.2907Inherited
CBS-domain pair0.3339Inherited
SNARE fusion complex0.3339Inherited
HD-domain/PDEase-like0.3482Inherited
TPR-like0.3513Inherited
BAR/IMD domain-like0.4037Inherited
Notch domain0.4406Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.5468Inherited
Family A G protein-coupled receptor-like0.6904Inherited
RNA-binding domain, RBD0.7167Inherited
HMG-box0.7438Inherited
E2F-DP heterodimerization region0.7678Inherited
"Winged helix" DNA-binding domain0.8396Inherited
alpha/beta-Hydrolases0.9943Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46966,51045
  • 46966 - Spectrin repeat
  • 51045 - WW domain
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0Direct
    51338,51556
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 51556 - Metallo-dependent hydrolases
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    51045,47473
  • 51045 - WW domain
  • 47473 - EF-hand
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.001445Inherited
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.001445Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.001767Inherited
    56112,55073
  • 56112 - Protein kinase-like (PK-like)
  • 55073 - Nucleotide cyclase
  • 0.01239Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.01434Inherited
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.01754Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.04089Inherited
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.0467Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.09869Inherited
    57196,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.1502Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.1502Inherited
    47473,57850
  • 47473 - EF-hand
  • 57850 - RING/U-box
  • 0.1502Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.1976Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.1976Inherited
    55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.2198Inherited
    55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.2198Inherited
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0.2198Inherited
    49417,81296
  • 49417 - p53-like transcription factors
  • 81296 - E set domains
  • 0.4406Inherited
    57184,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.6981Inherited
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0.7678Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    75399,75399,75399
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 75399 - Plakin repeat
  • 0Direct
    46966,51045,47473
  • 46966 - Spectrin repeat
  • 51045 - WW domain
  • 47473 - EF-hand
  • 0Direct
    46966,46966,51045
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 51045 - WW domain
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,48726,48726
  • 52058 - L domain-like
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0Direct
    51045,47473,47473
  • 51045 - WW domain
  • 47473 - EF-hand
  • 47473 - EF-hand
  • 0Direct
    51338,51556,51338
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.001445Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.002543Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.002639Inherited
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.06918Inherited
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.07082Inherited
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.09869Inherited
    57196,57184,57196
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.1023Inherited
    47473,47473,57850
  • 47473 - EF-hand
  • 47473 - EF-hand
  • 57850 - RING/U-box
  • 0.1502Inherited
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.2198Inherited
    57184,57196,57196
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.2493Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.2552Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.5494Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)