SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Mammalian Phenotype (MP): abnormal limbic system morphology

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   mammalian phenotype [MP:0000001] <29>
+ + + + 4:   nervous system phenotype [MP:0003631] <2>(98|127) (112|79|50)
+ + + 3:   abnormal nervous system morphology [MP:0003632] <17>(76|104) (91|64|47)
+ + 2:   abnormal brain morphology [MP:0002152] <24>(25|42) (35|24|14)
+ 1:   abnormal forebrain morphology [MP:0000783] <8>(18|26) (24|15|8)
0:   abnormal limbic system morphology [MP:0004166] <6>(7|8) (9|5|2)
- 1:   abnormal hippocampus morphology [MP:0000807] <12>(7|8) (8|5|2)
- 1:   abnormal hypothalamus morphology [MP:0000837] <8>(0|0) (0|0|0)
- 1:   abnormal amygdala morphology [MP:0000818] <2>(0|0) (0|0|0)
- 1:   abnormal fornicate gyrus morphology [MP:0004169] <2>(0|0) (0|0|0)
- 1:   abnormal nucleus accumbens morphology [MP:0004080] <1>(0|0) (0|0|0)
- 1:   abnormal orbitofrontal cortex morphology [MP:0004170](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Doublecortin (DC)0.002013Inherited
Metallo-dependent hydrolases0.08634Inherited
Composite domain of metallo-dependent hydrolases0.08634Inherited
Sema domain0.08784Inherited
SH3-domain0.1105Inherited
Plexin repeat0.1385Inherited
Homeodomain-like0.8394Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
beta-glycanases0.00008393Direct
Doublecortin (DC)0.001519Inherited
Hydantoinase (dihydropyrimidinase), catalytic domain0.0709Inherited
Hydantoinase (dihydropyrimidinase)0.0709Inherited
Sema domain0.07489Inherited
SH3-domain0.1018Inherited
Plexin repeat0.1226Inherited
Homeodomain0.5968Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Glutamine synthetase/guanido kinase0.0005845Direct
Doublecortin (DC)0.001144Inherited
Metallo-dependent hydrolases0.06425Inherited
Composite domain of metallo-dependent hydrolases0.06425Inherited
Sema domain0.06552Inherited
SH3-domain0.08449Inherited
Plexin repeat0.1086Inherited
E set domains0.1566Inherited
Homeodomain-like0.8076Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0.001144Inherited
    51338,51556
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 51556 - Metallo-dependent hydrolases
  • 0.06425Inherited
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0.06425Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.06552Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.08909Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    51338,51556,51338
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0.06425Inherited
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.08909Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)