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Mammalian Phenotype (MP): abnormal embryo morphology

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   mammalian phenotype [MP:0000001] <29>
+ 1:   embryo phenotype [MP:0005380] <7>(40|54) (46|28|19)
0:   abnormal embryo morphology [MP:0014134] <4>(23|31) (26|14|12)
- 1:   abnormal embryonic tissue morphology [MP:0002085] <35>(17|21) (19|10|9)
- 1:   abnormal embryo size [MP:0001697] <2>(3|11) (4|3|2)
- 1:   abnormal preimplantation embryo morphology [MP:0014137] <2>(3|2) (4|1|1)
- 1:   abnormal embryonic-extraembryonic boundary morphology [MP:0003890] <1>(2|2) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
SMAD MH1 domain0.00001094Direct
SMAD/FHA domain0.003826Inherited
Cullin repeat-like0.004873Inherited
Snake toxin-like0.007997Inherited
HCP-like0.01129Inherited
Cullin homology domain0.01129Inherited
Homeodomain-like0.02518Inherited
Formate/glycerate dehydrogenase catalytic domain-like0.03505Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.04269Inherited
Integrin beta tail domain0.05792Inherited
Nuclear receptor ligand-binding domain0.07749Inherited
Bromodomain0.07749Inherited
Nucleic acid-binding proteins0.07749Inherited
HMG-box0.1835Inherited
TIMP-like0.3599Inherited
SAM/Pointed domain0.3722Inherited
WD40 repeat-like0.3774Inherited
Ankyrin repeat0.3802Inherited
Histone-fold0.3924Inherited
Frizzled cysteine-rich domain0.4374Inherited
Cyclin-like0.4904Inherited
Cystine-knot cytokines0.611Inherited
PDZ domain-like0.6631Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains0Direct
DNA ligase0Direct
SMAD domain0.000006892Direct
SMAD MH1 domain0.000006892Direct
Extracellular domain of cell surface receptors0.000154Direct
DIX domain0.0001883Direct
Paired domain0.0006212Direct
Rel/Dorsal transcription factors, DNA-binding domain0.001494Inherited
Formate/glycerate dehydrogenases, substrate-binding domain0.004148Inherited
Tetrahydrofolate dehydrogenase/cyclohydrolase0.004148Inherited
C5 cytosine-specific DNA methylase, DCM0.004148Inherited
Cullin repeat0.004148Inherited
FAD/NAD-linked reductases, N-terminal and central domains0.008448Inherited
Phoshoinositide 3-kinase (PI3K) helical domain0.008448Inherited
Cullin homology domain0.008448Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.01608Inherited
Formate/glycerate dehydrogenases, NAD-domain0.02724Inherited
Homeodomain0.03977Inherited
Integrin beta tail domain0.04671Inherited
DEP domain0.05752Inherited
Bromodomain0.06621Inherited
Forkhead DNA-binding domain0.06621Inherited
Nuclear receptor ligand-binding domain0.06621Inherited
Nuclear receptor0.06621Inherited
T-box0.1324Inherited
HMG-box0.1675Inherited
Ankyrin repeat0.3723Inherited
Frizzled cysteine-rich domain0.4172Inherited
Transforming growth factor (TGF)-beta0.437Inherited
SAM (sterile alpha motif) domain0.5889Inherited
PDZ domain0.5947Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
SMAD MH1 domain0.000004817Direct
SMAD/FHA domain0.002248Inherited
Cullin repeat-like0.002917Inherited
Snake toxin-like0.004928Inherited
Cullin homology domain0.007129Inherited
HCP-like0.007129Inherited
Homeodomain-like0.01686Inherited
Formate/glycerate dehydrogenase catalytic domain-like0.02413Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.02977Inherited
Integrin beta tail domain0.04151Inherited
FYVE/PHD zinc finger0.05086Inherited
Nuclear receptor ligand-binding domain0.05707Inherited
Nucleic acid-binding proteins0.05707Inherited
Bromodomain0.05707Inherited
BRCT domain0.09915Inherited
HMG-box0.1485Inherited
TIMP-like0.3142Inherited
SAM/Pointed domain0.3263Inherited
WD40 repeat-like0.3313Inherited
Ankyrin repeat0.334Inherited
Histone-fold0.346Inherited
Frizzled cysteine-rich domain0.3899Inherited
Cyclin-like0.4426Inherited
Cystine-knot cytokines0.5657Inherited
PDZ domain-like0.6206Inherited
FnI-like domain0.925Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90193,90193
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57196,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    49417,81296
  • 49417 - p53-like transcription factors
  • 81296 - E set domains
  • 0.001188Inherited
    57196,63825
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.002917Inherited
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.003543Inherited
    48452,81901
  • 48452 - TPR-like
  • 81901 - HCP-like
  • 0.003543Inherited
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0.007129Inherited
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.01139Inherited
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0.02413Inherited
    57196,69687
  • 57196 - EGF/Laminin
  • 69687 - Integrin beta tail domain
  • 0.04151Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.09915Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.2032Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.272Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.7027Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    63825,57196,57424
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    57196,90193,90193
  • 57196 - EGF/Laminin
  • 90193 - Notch domain
  • 90193 - Notch domain
  • 0Direct
    57196,57424,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    63825,57196,63825
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 0.0001492Direct
    57196,63825,57196
  • 57196 - EGF/Laminin
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 0.002917Inherited
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.003543Inherited
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.007129Inherited
    57196,57196,69687
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 69687 - Integrin beta tail domain
  • 0.04151Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.18Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.2421Inherited
    57184,49899,49899
  • 57184 - Growth factor receptor domain
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.494Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.7765Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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