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Worm Phenotype (WP): cell death variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
0:   cell death variant [WBPhenotype:0000729] <3>(58|51) (58|15|5)
- 1:   programmed cell death variant [WBPhenotype:0001172] <3>(56|48) (56|14|5)
- 1:   induced cell death variant [WBPhenotype:0001268] <2>(1|2) (1|1|0)
- 1:   cell degeneration [WBPhenotype:0000178] <1>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
RBP11-like subunits of RNA polymerase0Direct
DLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
VPS9 domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
Calpain large subunit, middle domain (domain III)0.000000545Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000009103Direct
Cullin repeat-like0.000002221Direct
Skp1 dimerisation domain-like0.00001116Direct
Terpenoid cyclases/Protein prenyltransferases0.0001264Direct
Integrin domains0.0001264Direct
FYVE/PHD zinc finger0.0004895Direct
Tubby C-terminal domain-like0.0005535Direct
Cupredoxins0.0005535Direct
Caspase-like0.0005535Direct
Cullin homology domain0.0009013Direct
GroEL apical domain-like0.001771Inherited
GroEL-intermediate domain like0.004691Inherited
GroEL equatorial domain-like0.004691Inherited
Cysteine proteinases0.005449Inherited
ENTH/VHS domain0.005855Inherited
Sm-like ribonucleoproteins0.005855Inherited
Protein kinase-like (PK-like)0.01013Inherited
BAR/IMD domain-like0.01395Inherited
Calcium ATPase, transmembrane domain M0.01436Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.01436Inherited
F1F0 ATP synthase subunit C0.02242Inherited
DNA repair protein MutS, domain III0.02242Inherited
5' to 3' exonuclease, C-terminal subdomain0.02242Inherited
DEATH domain0.03036Inherited
Activating enzymes of the ubiquitin-like proteins0.03036Inherited
Calcium ATPase, transduction domain A0.03128Inherited
SH3-domain0.05556Inherited
SET domain0.07101Inherited
Hect, E3 ligase catalytic domain0.0736Inherited
PH domain-like0.07708Inherited
ARM repeat0.0992Inherited
Lamin A/C globular tail domain0.1304Inherited
PIN domain-like0.1499Inherited
Sec1/munc18-like (SM) proteins0.1499Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.1499Inherited
HLH, helix-loop-helix DNA-binding domain0.1624Inherited
SNARE-like0.171Inherited
POZ domain0.2007Inherited
Saposin0.2239Inherited
Intermediate filament protein, coiled coil region0.2432Inherited
"Winged helix" DNA-binding domain0.4309Inherited
Chromo domain-like0.4445Inherited
WD40 repeat-like0.4636Inherited
Nucleic acid-binding proteins0.477Inherited
Histone-fold0.5068Inherited
Metallo-dependent phosphatases0.6095Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6881Inherited
PLP-dependent transferases0.7077Inherited
RNA-binding domain, RBD1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
Cullin repeat0Direct
DLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Myotubularin-like phosphatases0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
RNA-polymerase beta0Direct
Protein prenyltransferases0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Integrin domains0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Arginine methyltransferase0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.000000000000001565Direct
Calpain large subunit, middle domain (domain III)0.000001457Direct
RecA protein-like (ATPase-domain)0.000002052Direct
Skp1 dimerisation domain-like0.00001154Direct
Ephrin ectodomain0.0001985Direct
Caspase catalytic domain0.0001985Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002713Direct
Calpain large subunit, catalytic domain (domain II)0.0003246Direct
Cullin homology domain0.0008052Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0008052Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.00162Inherited
BTB/POZ domain0.006254Inherited
G proteins0.006635Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.01106Inherited
BAR domain0.02013Inherited
Ubiquitin activating enzymes (UBA)0.02013Inherited
DNA repair protein MutS, domain III0.02013Inherited
F1F0 ATP synthase subunit C0.02013Inherited
5' to 3' exonuclease catalytic domain0.02013Inherited
5' to 3' exonuclease, C-terminal subdomain0.02013Inherited
Cold shock DNA-binding domain-like0.02564Inherited
Calcium ATPase, transduction domain A0.02962Inherited
Protein kinases, catalytic subunit0.05292Inherited
Histone lysine methyltransferases0.056Inherited
SH3-domain0.0571Inherited
Clathrin adaptor core protein0.06693Inherited
Hect, E3 ligase catalytic domain0.06809Inherited
Phosphotyrosine-binding domain (PTB)0.1074Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.1414Inherited
Sec1/munc18-like (SM) proteins0.1414Inherited
HLH, helix-loop-helix DNA-binding domain0.1622Inherited
Intermediate filament protein, coiled coil region0.2338Inherited
Translational machinery components0.2338Inherited
Armadillo repeat0.2786Inherited
Nucleosome core histones0.4925Inherited
Proteasome subunits0.6156Inherited
ABC transporter ATPase domain-like0.7758Inherited
Canonical RBD1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Clathrin adaptor appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
RBP11-like subunits of RNA polymerase0Direct
VPS9 domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
PX domain0Direct
Calpain large subunit, middle domain (domain III)0.0000004394Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000007353Direct
Cullin repeat-like0.0000018Direct
Skp1 dimerisation domain-like0.000009084Direct
Integrin domains0.0001036Direct
Terpenoid cyclases/Protein prenyltransferases0.0001036Direct
FYVE/PHD zinc finger0.0004051Direct
Tubby C-terminal domain-like0.0004585Direct
Cupredoxins0.0004585Direct
Caspase-like0.0004585Direct
Cullin homology domain0.0007498Direct
GroEL apical domain-like0.001482Inherited
GroEL equatorial domain-like0.003982Inherited
GroEL-intermediate domain like0.003982Inherited
Cysteine proteinases0.004633Inherited
ENTH/VHS domain0.004985Inherited
Sm-like ribonucleoproteins0.004985Inherited
Protein kinase-like (PK-like)0.008713Inherited
BAR/IMD domain-like0.01207Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.01243Inherited
Calcium ATPase, transmembrane domain M0.01243Inherited
F1F0 ATP synthase subunit C0.01956Inherited
DNA repair protein MutS, domain III0.01956Inherited
5' to 3' exonuclease, C-terminal subdomain0.01956Inherited
Activating enzymes of the ubiquitin-like proteins0.02666Inherited
DEATH domain0.02666Inherited
Calcium ATPase, transduction domain A0.02749Inherited
SH3-domain0.04936Inherited
SET domain0.0635Inherited
Hect, E3 ligase catalytic domain0.06585Inherited
PH domain-like0.06906Inherited
ARM repeat0.08954Inherited
Lamin A/C globular tail domain0.1185Inherited
PIN domain-like0.1367Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.1367Inherited
Sec1/munc18-like (SM) proteins0.1367Inherited
HLH, helix-loop-helix DNA-binding domain0.1486Inherited
SNARE-like0.1568Inherited
POZ domain0.1848Inherited
Saposin0.207Inherited
Intermediate filament protein, coiled coil region0.2256Inherited
"Winged helix" DNA-binding domain0.4102Inherited
Chromo domain-like0.4235Inherited
WD40 repeat-like0.4425Inherited
Nucleic acid-binding proteins0.4556Inherited
Histone-fold0.485Inherited
Metallo-dependent phosphatases0.5874Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.667Inherited
PLP-dependent transferases0.687Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.00000006049Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.000008818Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.00002379Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001036Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.003982Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003982Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.01243Inherited
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.01956Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.3825Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.5199Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003982Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.01243Inherited
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.1367Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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