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Worm Phenotype (WP): germ cell development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ 1:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
0:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
- 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
- 1:   germline proliferation variant [WBPhenotype:0000823] <6>(6|5) (7|0|0)
- 1:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
- 1:   no germ line [WBPhenotype:0000215] <2>(7|9) (7|3|1)
- 1:   distal germline variant [WBPhenotype:0000288](0|1) (0|0|0)
- 1:   feminization of germline [WBPhenotype:0000682](1|0) (1|0|0)
- 1:   masculinization of germline [WBPhenotype:0000683](1|2) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Ribosomal protein L10-like0Direct
Helical domain of Sec23/240Direct
Smc hinge domain0Direct
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
LEM domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Skp1 dimerisation domain-like0.0000000000004518Direct
GroEL apical domain-like0.0000000007217Direct
"Winged helix" DNA-binding domain0.0000000007699Direct
Nucleic acid-binding proteins0.000000002193Direct
Sm-like ribonucleoproteins0.000000004376Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000008857Direct
WD40 repeat-like0.000002529Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000005014Direct
Histone-fold0.0000927Direct
Translation proteins SH3-like domain0.0002312Direct
Class II aaRS and biotin synthetases0.0002971Direct
ADC-like0.0003855Direct
RBP11-like subunits of RNA polymerase0.0003855Direct
Cdc48 domain 2-like0.0003855Direct
beta-sandwich domain of Sec23/240.0003855Direct
POZ domain0.0004786Direct
HMG-box0.0007776Direct
Activating enzymes of the ubiquitin-like proteins0.001613Inherited
F1F0 ATP synthase subunit C0.001632Inherited
Ribosomal proteins S24e, L23 and L15e0.001632Inherited
S15/NS1 RNA-binding domain0.001632Inherited
TPR-like0.002544Inherited
L30e-like0.003171Inherited
SMAD MH1 domain0.004202Inherited
Translational machinery components0.004202Inherited
SNARE-like0.005238Inherited
Translation proteins0.008298Inherited
ACP-like0.008492Inherited
Cullin homology domain0.008492Inherited
CCCH zinc finger0.01342Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02336Inherited
Ribosomal protein S5 domain 2-like0.02993Inherited
Cysteine-rich domain0.1045Inherited
SET domain0.1326Inherited
P-loop containing nucleoside triphosphate hydrolases0.1594Inherited
ARM repeat0.5459Inherited
EGF/Laminin0.8669Inherited
Nucleotidylyl transferase0.9644Inherited
RNA-binding domain, RBD0.9824Inherited
F-box domain0.9884Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
RNA-polymerase beta0Direct
14-3-3 protein0Direct
Proteasome subunits0Direct
LEM domain0Direct
Trunk domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0.0000000000006288Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000001583Direct
Extended AAA-ATPase domain0.00000002806Direct
BTB/POZ domain0.00000003534Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000003771Direct
Pumilio repeat0.000004348Direct
RecA protein-like (ATPase-domain)0.000008097Direct
WD40-repeat0.000008337Direct
Nucleosome core histones0.0001093Direct
G proteins0.0001268Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0002308Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0003248Direct
RNA editing terminal uridyl transferase 2, RET2, domain 20.0004882Direct
Cdc48 domain 2-like0.0004882Direct
Anticodon-binding domain0.0004882Direct
Cdc48 N-terminal domain-like0.0004882Direct
Anticodon-binding domain of Class II aaRS0.0004882Direct
Actin/HSP700.0006059Direct
Single strand DNA-binding domain, SSB0.0009531Direct
Cyclin0.001439Inherited
L30e/L7ae ribosomal proteins0.002072Inherited
F1F0 ATP synthase subunit C0.002072Inherited
Retrovirus zinc finger-like domains0.002177Inherited
SMAD domain0.002266Inherited
Translational machinery components0.002266Inherited
SMAD MH1 domain0.005358Inherited
Cold shock DNA-binding domain-like0.008419Inherited
Clathrin adaptor core protein0.01084Inherited
Cullin homology domain0.01084Inherited
CCCH zinc finger0.02298Inherited
Elongation factors0.02953Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02992Inherited
Ubiquitin-related0.04179Inherited
Nitrogenase iron protein-like0.06074Inherited
Histone lysine methyltransferases0.07803Inherited
Tetratricopeptide repeat (TPR)0.1636Inherited
Protein serine/threonine phosphatase0.8123Inherited
Motor proteins0.9041Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.9808Inherited
Canonical RBD0.992Inherited
Protein kinases, catalytic subunit1Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ribosomal protein L10-like0Direct
GroEL equatorial domain-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
14-3-3 protein0Direct
LEM domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Zn-finger domain of Sec23/240Direct
Smc hinge domain0Direct
Skp1 dimerisation domain-like0.0000000000003555Direct
GroEL apical domain-like0.0000000005729Direct
"Winged helix" DNA-binding domain0.0000000006112Direct
Nucleic acid-binding proteins0.000000001743Direct
Sm-like ribonucleoproteins0.000000003485Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000007061Direct
WD40 repeat-like0.000002051Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000004076Direct
Histone-fold0.00007594Direct
Translation proteins SH3-like domain0.0001901Direct
Class II aaRS and biotin synthetases0.0002447Direct
Cdc48 domain 2-like0.000318Direct
RBP11-like subunits of RNA polymerase0.000318Direct
beta-sandwich domain of Sec23/240.000318Direct
ADC-like0.000318Direct
POZ domain0.0003959Direct
HMG-box0.0006465Direct
Retrovirus zinc finger-like domains0.001077Inherited
Activating enzymes of the ubiquitin-like proteins0.001348Inherited
F1F0 ATP synthase subunit C0.001364Inherited
Ribosomal proteins S24e, L23 and L15e0.001364Inherited
S15/NS1 RNA-binding domain0.001364Inherited
TPR-like0.002142Inherited
L30e-like0.002678Inherited
Translational machinery components0.003562Inherited
SMAD MH1 domain0.003562Inherited
SNARE-like0.004452Inherited
Translation proteins0.007107Inherited
Cullin homology domain0.007278Inherited
ACP-like0.007278Inherited
CCCH zinc finger0.01161Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02039Inherited
Ribosomal protein S5 domain 2-like0.02628Inherited
Cysteine-rich domain0.09448Inherited
SET domain0.1206Inherited
P-loop containing nucleoside triphosphate hydrolases0.1457Inherited
ARM repeat0.524Inherited
EGF/Laminin0.8507Inherited
Nucleotidylyl transferase0.9516Inherited
RNA-binding domain, RBD0.9709Inherited
F-box domain0.9776Inherited
Protein kinase-like (PK-like)1Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000006009Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000318Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.000318Direct
    49599,54695
  • 49599 - TRAF domain-like
  • 54695 - POZ domain
  • 0.0004085Direct
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.0006474Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.000725Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001364Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.009387Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01289Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02039Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.02323Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.05027Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05125Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.9516Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02039Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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