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Worm Phenotype (WP): light response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   behavior variant [WBPhenotype:0000517] <2>(119|121) (119|54|20)
+ 1:   organism behavior variant [WBPhenotype:0000525] <20>(119|121) (119|54|20)
0:   light response variant [WBPhenotype:0001897] <4>(7|6) (7|4|2)
- 1:   organism UV response variant [WBPhenotype:0000143] <3>(7|6) (7|4|2)
- 1:   pharyngeal pumping rate in response to light variant [WBPhenotype:0002446] <3>(0|0) (0|0|0)
- 1:   calcium response to light variant [WBPhenotype:0002456](0|0) (0|0|0)
- 1:   phototaxis defective [WBPhenotype:0001787](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ARID-like0.0000000005758Direct
P-loop containing nucleoside triphosphate hydrolases0.00000002715Direct
Chromo domain-like0.0000002008Direct
DNA/RNA polymerases0.000002506Direct
Bromodomain0.00001284Direct
Arginase/deacetylase0.00004669Direct
FYVE/PHD zinc finger0.00004795Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Tandem AAA-ATPase domain0Direct
ARID domain0.000000001238Direct
PHD domain0.000001838Direct
Bromodomain0.00001158Direct
Histone deacetylase, HDAC0.00003982Direct
Chromo domain0.00005177Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ARID-like0.0000000004569Direct
P-loop containing nucleoside triphosphate hydrolases0.00000002169Direct
Chromo domain-like0.0000001613Direct
DNA/RNA polymerases0.000002031Direct
Bromodomain0.00001046Direct
Arginase/deacetylase0.00003818Direct
FYVE/PHD zinc finger0.00003922Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000000000006405Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000004108Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.000008202Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.000008202Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000004108Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000004108Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)