SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): organism stress response variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <5>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <10>(354|423) (357|200|60)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(343|412) (348|198|59)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|108) (120|53|16)
0:   organism stress response variant [WBPhenotype:0000067] <17>(30|27) (31|9|2)
- 1:   organism temperature response variant [WBPhenotype:0000146] <8>(1|0) (1|0|0)
- 1:   organism starvation response variant [WBPhenotype:0000147] <5>(2|2) (2|1|0)
- 1:   organism osmotic stress response variant [WBPhenotype:0000876] <4>(5|3) (7|0|0)
- 1:   organism heat response variant [WBPhenotype:0001273] <3>(4|4) (4|1|0)
- 1:   organism ionizing radiation response variant [WBPhenotype:0000686] <3>(2|0) (2|0|0)
- 1:   organism oxidative stress response variant [WBPhenotype:0001620] <3>(7|8) (7|2|0)
- 1:   organism UV response variant [WBPhenotype:0000143] <2>(6|6) (6|4|2)
- 1:   methyl methanesulfonate response variant [WBPhenotype:0000498] <1>(0|0) (0|0|0)
- 1:   organism crowding response variant [WBPhenotype:0000191] <1>(0|0) (0|0|0)
- 1:   organism desiccation response variant [WBPhenotype:0001417] <1>(0|0) (0|0|0)
- 1:   rhythmic tolerance to stress variant [WBPhenotype:0001709] <1>(0|0) (0|0|0)
- 1:   stress induced lethality variant [WBPhenotype:0000139] <1>(2|2) (3|0|0)
- 1:   ethyl methanesulfonate response variant [WBPhenotype:0000499](0|0) (0|0|0)
- 1:   organism electrophilic stress hypersensitive [WBPhenotype:0001634](2|2) (2|1|0)
- 1:   organism hypersensitive interstrand cross link agents [WBPhenotype:0001796](0|0) (0|0|0)
- 1:   organism response to pH variant [WBPhenotype:0001732](0|0) (0|0|0)
- 1:   stress induced arrest variant [WBPhenotype:0000140](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
GST C-terminal domain-like0.00000000001027Direct
Thioredoxin-like0.00000003864Direct
F1F0 ATP synthase subunit C0.000005132Direct
ARID-like0.000005132Direct
5' to 3' exonuclease, C-terminal subdomain0.00007023Direct
PIN domain-like0.0002151Direct
Sec63 N-terminal domain-like0.0003128Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.0008429Direct
Ankyrin repeat0.00109Inherited
Bromodomain0.001266Inherited
Chromo domain-like0.004394Inherited
Clavaminate synthase-like0.01576Inherited
Arginase/deacetylase0.02709Inherited
"Winged helix" DNA-binding domain0.02986Inherited
ARM repeat0.03862Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04102Inherited
FYVE/PHD zinc finger0.07261Inherited
P-loop containing nucleoside triphosphate hydrolases0.07594Inherited
Periplasmic binding protein-like II0.08657Inherited
Sm-like ribonucleoproteins0.08683Inherited
Cysteine proteinases0.1854Inherited
BRCT domain0.2225Inherited
Lipocalins0.3871Inherited
Protein kinase-like (PK-like)0.4528Inherited
E set domains0.4783Inherited
RNA-binding domain, RBD0.5668Inherited
Nucleotidylyl transferase0.6778Inherited
MFS general substrate transporter0.933Inherited
Histone-fold1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Heme-dependent catalases0Direct
Tandem AAA-ATPase domain0.000000000006656Direct
Glutathione S-transferase (GST), N-terminal domain0.000000003403Direct
Glutathione S-transferase (GST), C-terminal domain0.000000003403Direct
F1F0 ATP synthase subunit C0.000009234Direct
ARID domain0.000009234Direct
5' to 3' exonuclease, C-terminal subdomain0.0001069Direct
5' to 3' exonuclease catalytic domain0.0001069Direct
Ankyrin repeat0.0008061Direct
Bromodomain0.0009536Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.001272Inherited
Glutathione peroxidase-like0.004936Inherited
PHD domain0.007247Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.0127Inherited
Group II chaperonin (CCT, TRIC), apical domain0.0127Inherited
Histone deacetylase, HDAC0.02229Inherited
Erythroid transcription factor GATA-10.0313Inherited
FAD/NAD-linked reductases, N-terminal and central domains0.0313Inherited
Chromo domain0.03176Inherited
Proteasome subunits0.0341Inherited
Phosphate binding protein-like0.07409Inherited
Fatty acid binding protein-like0.154Inherited
PLC-like (P variant)0.4638Inherited
Canonical RBD0.5219Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.8043Inherited
Nucleosome core histones1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
GST C-terminal domain-like0.000000000008043Direct
Thioredoxin-like0.00000003069Direct
F1F0 ATP synthase subunit C0.000004139Direct
ARID-like0.000004139Direct
5' to 3' exonuclease, C-terminal subdomain0.00005711Direct
PIN domain-like0.0001757Direct
Sec63 N-terminal domain-like0.0002563Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.0006964Direct
Ankyrin repeat0.000902Direct
Bromodomain0.001049Inherited
Chromo domain-like0.003706Inherited
Clavaminate synthase-like0.01356Inherited
Arginase/deacetylase0.02362Inherited
"Winged helix" DNA-binding domain0.02608Inherited
ARM repeat0.03389Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.03604Inherited
FYVE/PHD zinc finger0.06475Inherited
P-loop containing nucleoside triphosphate hydrolases0.0678Inherited
Periplasmic binding protein-like II0.0776Inherited
Sm-like ribonucleoproteins0.07785Inherited
Cysteine proteinases0.1699Inherited
BRCT domain0.2053Inherited
Lipocalins0.366Inherited
Protein kinase-like (PK-like)0.4309Inherited
E set domains0.4565Inherited
UDP-Glycosyltransferase/glycogen phosphorylase0.5221Inherited
RNA-binding domain, RBD0.5444Inherited
Nucleotidylyl transferase0.6564Inherited
MFS general substrate transporter0.9201Inherited
Histone-fold1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.000000000008395Direct
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000002411Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00005711Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005711Direct
    51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0.0006964Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.001483Inherited
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.02362Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.03302Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005711Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005711Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)