SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): oogenesis variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <5>
+ + + + 4:   development variant [WBPhenotype:0000518] <7>(511|586) (511|253|70)
+ + + 3:   cell development variant [WBPhenotype:0000529] <16>(125|123) (125|48|16)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(64|59) (64|26|6)
+ 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(35|39) (35|15|2)
+ 1:   germ cell development variant [WBPhenotype:0000812] <8>(62|59) (62|26|6)
0:   oogenesis variant [WBPhenotype:0000186] <5>(31|33) (31|14|2)
- 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
- 1:   multiple nuclei oocyte [WBPhenotype:0001955](0|1) (0|0|0)
- 1:   oocyte number decreased [WBPhenotype:0001944](7|7) (7|3|1)
- 1:   oocytes lack nucleus [WBPhenotype:0001956](2|2) (2|1|0)
- 1:   precocious oogenesis [WBPhenotype:0001385](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.000001078Direct
beta-sandwich domain of Sec23/240.00001582Direct
Translation proteins0.00003777Direct
SNARE-like0.00007076Direct
F1F0 ATP synthase subunit C0.00007294Direct
S15/NS1 RNA-binding domain0.00007294Direct
Ribosomal proteins S24e, L23 and L15e0.00007294Direct
Translational machinery components0.0002029Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001379Inherited
GroEL-intermediate domain like0.01088Inherited
GroEL apical domain-like0.01088Inherited
GroEL equatorial domain-like0.01088Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.02527Inherited
L30e-like0.02564Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02564Inherited
Class II aaRS and biotin synthetases0.03133Inherited
Sm-like ribonucleoproteins0.03838Inherited
Ribosomal protein S5 domain 2-like0.1152Inherited
POZ domain0.1906Inherited
Nucleic acid-binding proteins0.3658Inherited
Nucleotidylyl transferase0.4221Inherited
CCCH zinc finger0.4478Inherited
"Winged helix" DNA-binding domain0.8778Inherited
Histone-fold0.8857Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Anticodon-binding domain0.00002556Direct
Translational machinery components0.00006841Direct
F1F0 ATP synthase subunit C0.0001174Direct
G proteins0.0001314Direct
Clathrin adaptor core protein0.0007028Direct
Elongation factors0.0007544Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002194Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.00247Inherited
Group II chaperonin (CCT, TRIC), apical domain0.00247Inherited
Nitrogenase iron protein-like0.005026Inherited
Cold shock DNA-binding domain-like0.005512Inherited
BTB/POZ domain0.01918Inherited
RecA protein-like (ATPase-domain)0.02699Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.03615Inherited
Proteasome subunits0.05282Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.05901Inherited
L30e/L7ae ribosomal proteins0.05901Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.06538Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.1966Inherited
Pumilio repeat0.1966Inherited
Extended AAA-ATPase domain0.2907Inherited
CCCH zinc finger0.4699Inherited
Nucleosome core histones0.9842Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-finger domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Translation proteins SH3-like domain0.0000008657Direct
beta-sandwich domain of Sec23/240.00001281Direct
Translation proteins0.00003067Direct
SNARE-like0.00005755Direct
S15/NS1 RNA-binding domain0.00005933Direct
Ribosomal proteins S24e, L23 and L15e0.00005933Direct
F1F0 ATP synthase subunit C0.00005933Direct
Translational machinery components0.0001656Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001144Inherited
GroEL equatorial domain-like0.009297Inherited
GroEL-intermediate domain like0.009297Inherited
GroEL apical domain-like0.009297Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.02198Inherited
L30e-like0.02231Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02231Inherited
Class II aaRS and biotin synthetases0.02739Inherited
Sm-like ribonucleoproteins0.03367Inherited
Ribosomal protein S5 domain 2-like0.1042Inherited
POZ domain0.1747Inherited
Nucleic acid-binding proteins0.3451Inherited
Nucleotidylyl transferase0.4002Inherited
CCCH zinc finger0.4258Inherited
"Winged helix" DNA-binding domain0.8626Inherited
Histone-fold0.8708Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001281Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00005933Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0002013Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001144Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.009297Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.009297Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02231Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05091Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.05091Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.6759Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001144Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.009297Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)