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Worm Phenotype (WP): oogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(120|122) (121|48|12)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(58|56) (59|22|4)
+ 1:   germ cell development variant [WBPhenotype:0000812] <8>(55|56) (56|22|4)
+ 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
0:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
- 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
- 1:   multiple nuclei oocyte [WBPhenotype:0001955](0|1) (0|0|0)
- 1:   oocyte number decreased [WBPhenotype:0001944](8|7) (8|3|1)
- 1:   oocytes lack nucleus [WBPhenotype:0001956](2|2) (2|1|0)
- 1:   precocious oogenesis [WBPhenotype:0001385](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.000001221Direct
beta-sandwich domain of Sec23/240.00001679Direct
Translation proteins0.00004324Direct
Ribosomal proteins S24e, L23 and L15e0.0000775Direct
F1F0 ATP synthase subunit C0.0000775Direct
S15/NS1 RNA-binding domain0.0000775Direct
SNARE-like0.00007812Direct
L30e-like0.00008174Direct
Translational machinery components0.0002152Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002639Direct
ACP-like0.0004658Direct
Cullin homology domain0.0004658Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001466Inherited
Class II aaRS and biotin synthetases0.003644Inherited
GroEL equatorial domain-like0.01749Inherited
GroEL-intermediate domain like0.01749Inherited
GroEL apical domain-like0.01749Inherited
Ribosomal protein S5 domain 2-like0.03354Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04366Inherited
Sm-like ribonucleoproteins0.06054Inherited
POZ domain0.3649Inherited
Nucleotidylyl transferase0.3652Inherited
Nucleic acid-binding proteins0.4863Inherited
CCCH zinc finger0.5121Inherited
"Winged helix" DNA-binding domain0.8907Inherited
Histone-fold0.9459Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Trunk domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Anticodon-binding domain0.00002606Direct
Translational machinery components0.00007049Direct
L30e/L7ae ribosomal proteins0.0001196Direct
F1F0 ATP synthase subunit C0.0001196Direct
G proteins0.0005599Direct
Clathrin adaptor core protein0.0007164Direct
Cullin homology domain0.0007164Direct
Elongation factors0.0007848Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002237Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003488Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.004339Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.004339Inherited
Group II chaperonin (CCT, TRIC), apical domain0.004339Inherited
Nitrogenase iron protein-like0.005131Inherited
Cold shock DNA-binding domain-like0.008969Inherited
RecA protein-like (ATPase-domain)0.03799Inherited
BTB/POZ domain0.04271Inherited
Proteasome subunits0.08742Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0964Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.1255Inherited
Pumilio repeat0.2521Inherited
Extended AAA-ATPase domain0.4919Inherited
CCCH zinc finger0.5418Inherited
Nucleosome core histones1Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
Translation proteins SH3-like domain0.0000009902Direct
beta-sandwich domain of Sec23/240.00001372Direct
Translation proteins0.00003542Direct
F1F0 ATP synthase subunit C0.00006357Direct
Ribosomal proteins S24e, L23 and L15e0.00006357Direct
S15/NS1 RNA-binding domain0.00006357Direct
SNARE-like0.0000641Direct
L30e-like0.00006711Direct
Translational machinery components0.0001774Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000218Direct
ACP-like0.0003862Direct
Cullin homology domain0.0003862Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001227Inherited
Class II aaRS and biotin synthetases0.003087Inherited
GroEL apical domain-like0.01518Inherited
GroEL equatorial domain-like0.01518Inherited
GroEL-intermediate domain like0.01518Inherited
Ribosomal protein S5 domain 2-like0.02952Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.03864Inherited
Sm-like ribonucleoproteins0.05397Inherited
POZ domain0.3445Inherited
Nucleotidylyl transferase0.3448Inherited
Nucleic acid-binding proteins0.4649Inherited
CCCH zinc finger0.4905Inherited
"Winged helix" DNA-binding domain0.8757Inherited
Histone-fold0.9329Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001372Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00006357Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0002236Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0003862Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001227Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.01518Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.01518Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.03096Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.06579Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7423Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001227Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.01518Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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