SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): accumulated cell corpses

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <5>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <6>(490|567) (491|248|69)
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <27>(143|144) (143|64|18)
+ + + + 4:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
+ + + 3:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
+ + 2:   apoptosis variant [WBPhenotype:0000730] <13>(50|44) (50|13|5)
+ 1:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
0:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
- 1:   accumulated germline cell corpses [WBPhenotype:0001180](15|18) (16|9|4)
- 1:   accumulated somatic cell corpses [WBPhenotype:0001181](2|2) (2|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000001423Direct
Cullin repeat-like0.000000004733Direct
ENTH/VHS domain0.0000003727Direct
GroEL apical domain-like0.000000761Direct
SH3-domain0.000001502Direct
Histone-fold0.000002753Direct
Clathrin adaptor appendage domain0.000003767Direct
Integrin domains0.000003767Direct
Activating enzymes of the ubiquitin-like proteins0.000006214Direct
Metal cation-transporting ATPase, ATP-binding domain N0.000009696Direct
GroEL-intermediate domain like0.00001335Direct
GroEL equatorial domain-like0.00001335Direct
Calcium ATPase, transmembrane domain M0.0000137Direct
Tubby C-terminal domain-like0.00001766Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005028Direct
Sec1/munc18-like (SM) proteins0.00005028Direct
Calcium ATPase, transduction domain A0.00009472Direct
POZ domain0.0001323Direct
"Winged helix" DNA-binding domain0.5002Inherited
ARM repeat0.5429Inherited
BAR/IMD domain-like0.7039Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
Cullin repeat0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Arginine methyltransferase0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000004675Direct
BTB/POZ domain0.000000009738Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000083Direct
RecA protein-like (ATPase-domain)0.000001568Direct
Nucleosome core histones0.000003414Direct
SH3-domain0.00001023Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00001315Direct
BAR domain0.00003072Direct
Ubiquitin activating enzymes (UBA)0.00003072Direct
Sec1/munc18-like (SM) proteins0.000087Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000087Direct
Clathrin adaptor core protein0.0001919Direct
Calcium ATPase, transduction domain A0.000231Direct
Phosphotyrosine-binding domain (PTB)0.0002368Direct
Armadillo repeat0.002109Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DLC0Direct
Skp1 dimerisation domain-like0Direct
PX domain0Direct
Cullin homology domain0.0000000001121Direct
Cullin repeat-like0.000000003749Direct
ENTH/VHS domain0.0000002984Direct
GroEL apical domain-like0.0000006111Direct
SH3-domain0.000001209Direct
Histone-fold0.000002222Direct
Integrin domains0.00000304Direct
Clathrin adaptor appendage domain0.00000304Direct
Activating enzymes of the ubiquitin-like proteins0.000005022Direct
Metal cation-transporting ATPase, ATP-binding domain N0.000007837Direct
GroEL equatorial domain-like0.00001081Direct
GroEL-intermediate domain like0.00001081Direct
Calcium ATPase, transmembrane domain M0.00001109Direct
Tubby C-terminal domain-like0.00001431Direct
Sec1/munc18-like (SM) proteins0.00004088Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00004088Direct
Calcium ATPase, transduction domain A0.00007722Direct
POZ domain0.000108Direct
SNARE-like0.001919Inherited
"Winged helix" DNA-binding domain0.4775Inherited
ARM repeat0.52Inherited
BAR/IMD domain-like0.6834Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.000007837Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001081Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00001081Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00001431Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00007919Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001919Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000005422Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001081Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0007136Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)