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Worm Phenotype (WP): accumulated cell corpses

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ + + + 4:   cell death variant [WBPhenotype:0000729] <3>(58|51) (58|15|5)
+ + + 3:   programmed cell death variant [WBPhenotype:0001172] <3>(56|48) (56|14|5)
+ + 2:   apoptosis variant [WBPhenotype:0000730] <13>(51|44) (51|12|5)
+ 1:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (29|9|5)
0:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (24|9|5)
- 1:   accumulated germline cell corpses [WBPhenotype:0001180](15|18) (15|8|4)
- 1:   accumulated somatic cell corpses [WBPhenotype:0001181](2|2) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
DLC0Direct
PX domain0Direct
Cullin homology domain0.0000000001602Direct
Cullin repeat-like0.000000005321Direct
ENTH/VHS domain0.0000004168Direct
GroEL apical domain-like0.0000008381Direct
SH3-domain0.000001783Direct
Histone-fold0.000003336Direct
Integrin domains0.000004013Direct
Clathrin adaptor appendage domain0.000004013Direct
Activating enzymes of the ubiquitin-like proteins0.000006718Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001077Direct
GroEL equatorial domain-like0.00001441Direct
GroEL-intermediate domain like0.00001441Direct
Calcium ATPase, transmembrane domain M0.0000152Direct
Tubby C-terminal domain-like0.0000188Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005338Direct
Sec1/munc18-like (SM) proteins0.00005338Direct
Calcium ATPase, transduction domain A0.0001034Direct
POZ domain0.0001296Direct
"Winged helix" DNA-binding domain0.4892Inherited
ARM repeat0.5323Inherited
BAR/IMD domain-like0.6898Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
FYVE, a phosphatidylinositol-3-phosphate binding domain0Direct
DLC0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Arginine methyltransferase0Direct
Cullin repeat0Direct
Cullin homology domain0.0000000005078Direct
BTB/POZ domain0.00000001475Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000008873Direct
RecA protein-like (ATPase-domain)0.000001656Direct
Nucleosome core histones0.000003917Direct
SH3-domain0.0000115Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00001384Direct
BAR domain0.00003198Direct
Ubiquitin activating enzymes (UBA)0.00003198Direct
Sec1/munc18-like (SM) proteins0.00009051Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00009051Direct
Clathrin adaptor core protein0.0001994Direct
Calcium ATPase, transduction domain A0.0002449Direct
Phosphotyrosine-binding domain (PTB)0.0002486Direct
Armadillo repeat0.002178Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DLC0Direct
Skp1 dimerisation domain-like0Direct
PX domain0Direct
Cullin homology domain0.0000000001273Direct
Cullin repeat-like0.000000004252Direct
ENTH/VHS domain0.0000003368Direct
GroEL apical domain-like0.000000679Direct
SH3-domain0.00000145Direct
Histone-fold0.000002717Direct
Clathrin adaptor appendage domain0.000003269Direct
Integrin domains0.000003269Direct
Activating enzymes of the ubiquitin-like proteins0.000005478Direct
Metal cation-transporting ATPase, ATP-binding domain N0.000008788Direct
GroEL equatorial domain-like0.00001177Direct
GroEL-intermediate domain like0.00001177Direct
Calcium ATPase, transmembrane domain M0.00001242Direct
Tubby C-terminal domain-like0.00001537Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00004378Direct
Sec1/munc18-like (SM) proteins0.00004378Direct
Calcium ATPase, transduction domain A0.00008492Direct
POZ domain0.0001066Direct
"Winged helix" DNA-binding domain0.4677Inherited
ARM repeat0.5107Inherited
BAR/IMD domain-like0.6688Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.000008788Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00001177Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001177Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00001537Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00008825Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000006085Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001177Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.000762Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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