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Worm Phenotype (WP): somatic gonad development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (79|32|13)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(47|41) (48|21|9)
+ 1:   gonad development variant [WBPhenotype:0000691] <2>(20|17) (21|9|5)
0:   somatic gonad development variant [WBPhenotype:0000399] <12>(15|13) (16|6|1)
- 1:   distal tip cell development variant [WBPhenotype:0001656] <2>(2|2) (2|0|0)
- 1:   spermatheca development variant [WBPhenotype:0001662] <1>(0|0) (0|0|0)
- 1:   extra gonad arms [WBPhenotype:0001928](0|0) (0|0|0)
- 1:   extra gonadal sheath cells [WBPhenotype:0001992](0|0) (0|0|0)
- 1:   fewer gonadal sheath cells [WBPhenotype:0001993](0|0) (0|0|0)
- 1:   male somatic gonad development variant [WBPhenotype:0002188](6|5) (6|3|1)
- 1:   missing gonad arms [WBPhenotype:0002207](0|0) (0|0|0)
- 1:   no anchor cell [WBPhenotype:0002136](0|0) (0|0|0)
- 1:   non reflexed gonad arms [WBPhenotype:0000396](0|0) (0|0|0)
- 1:   oocyte septum formation variant [WBPhenotype:0001810](5|6) (5|2|0)
- 1:   somatic gonad precursor symmetrical sisters [WBPhenotype:0001968](0|0) (0|0|0)
- 1:   somatic gonad primordium development defective [WBPhenotype:0000400](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.00001379Direct
GroEL-intermediate domain like0.00001379Direct
F1F0 ATP synthase subunit C0.00001813Direct
GroEL apical domain-like0.00002638Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00007986Direct
TPR-like0.0001033Direct
Acyl-CoA N-acyltransferases (Nat)0.0004403Direct
Cyclin-like0.0007016Direct
SNARE-like0.002343Inherited
Tubulin nucleotide-binding domain-like0.003913Inherited
Tubulin C-terminal domain-like0.004895Inherited
Nucleic acid-binding proteins0.2379Inherited
Bromodomain0.9148Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.000001071Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000001463Direct
N-acetyl transferase, NAT0.000005312Direct
F1F0 ATP synthase subunit C0.000029Direct
RecA protein-like (ATPase-domain)0.00008209Direct
Clathrin adaptor core protein0.0001812Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0003434Direct
Group II chaperonin (CCT, TRIC), apical domain0.0005867Direct
Tubulin, GTPase domain0.006087Inherited
Tubulin, C-terminal domain0.007616Inherited
Bromodomain0.9067Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.00001126Direct
GroEL-intermediate domain like0.00001126Direct
F1F0 ATP synthase subunit C0.00001482Direct
GroEL apical domain-like0.00002159Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006554Direct
TPR-like0.00008485Direct
Acyl-CoA N-acyltransferases (Nat)0.000365Direct
Cyclin-like0.0005836Direct
Chromo domain-like0.0008919Direct
SNARE-like0.001975Inherited
Tubulin nucleotide-binding domain-like0.003318Inherited
Tubulin C-terminal domain-like0.004161Inherited
Nucleic acid-binding proteins0.2206Inherited
Bromodomain0.9005Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000003152Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00001126Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001126Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.00001622Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.003318Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001126Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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