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Worm Phenotype (WP): necrotic cell death variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
+ + + + 4:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ + + 3:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
+ + 2:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
+ 1:   non apoptotic cell death variant [WBPhenotype:0001173] <2>(12|10) (12|4|1)
0:   necrotic cell death variant [WBPhenotype:0000415] <1>(11|8) (11|3|1)
- 1:   necrotic cell death increased [WBPhenotype:0001397] <2>(10|8) (10|3|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.000000000003774Direct
Cullin repeat-like0.0000000001296Direct
Activating enzymes of the ubiquitin-like proteins0.0000005Direct
POZ domain0.0000006056Direct
SET domain0.00000122Direct
"Winged helix" DNA-binding domain0.00001064Direct
Sm-like ribonucleoproteins0.0009555Direct
Chromo domain-like0.001433Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.007612Inherited
ARM repeat0.3974Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cullin repeat0Direct
Arginine methyltransferase0Direct
Skp1 dimerisation domain-like0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Cullin homology domain0.000000000006496Direct
BTB/POZ domain0.00000000001926Direct
Ubiquitin activating enzymes (UBA)0.00000281Direct
Histone lysine methyltransferases0.000004002Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.000000000002998Direct
Cullin repeat-like0.0000000001033Direct
Activating enzymes of the ubiquitin-like proteins0.0000004053Direct
POZ domain0.0000004915Direct
SET domain0.0000009935Direct
"Winged helix" DNA-binding domain0.000008703Direct
Sm-like ribonucleoproteins0.0008004Direct
Chromo domain-like0.001203Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.006524Inherited
ARM repeat0.3764Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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