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Worm Phenotype (WP): nuclear positioning variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
+ + + 3:   cell component morphology variant [WBPhenotype:0002089] <20>(84|88) (84|43|9)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|43) (40|19|4)
+ + 2:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ 1:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|155) (154|66|17)
+ 1:   organelle organization biogenesis variant [WBPhenotype:0001344] <13>(22|26) (23|7|1)
+ 1:   cell physiology variant [WBPhenotype:0000536] <26>(152|155) (154|66|17)
0:   nuclear positioning variant [WBPhenotype:0000511] <4>(12|14) (13|5|1)
- 1:   germline nuclear positioning variant [WBPhenotype:0001952] <1>(11|10) (12|5|1)
- 1:   nuclear position defective early emb [WBPhenotype:0001027] <1>(1|2) (1|0|0)
- 1:   VNC nuclear positioning variant [WBPhenotype:0000512](0|0) (0|0|0)
- 1:   nuclear anchoring variant [WBPhenotype:0001997](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
beta-sandwich domain of Sec23/240.000001537Direct
GroEL-intermediate domain like0.00001153Direct
GroEL equatorial domain-like0.00001153Direct
GroEL apical domain-like0.00003394Direct
SNARE-like0.0009416Direct
Class II aaRS and biotin synthetases0.007478Inherited
Nucleic acid-binding proteins0.01606Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02034Inherited
Actin-like ATPase domain0.02713Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000002188Direct
Pumilio repeat0.000002188Direct
Group II chaperonin (CCT, TRIC), apical domain0.000008743Direct
G proteins0.0001706Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.0002532Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.002888Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.006092Inherited
Actin/HSP700.05317Inherited
Extended AAA-ATPase domain0.2059Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
beta-sandwich domain of Sec23/240.000001235Direct
GroEL equatorial domain-like0.000009321Direct
GroEL-intermediate domain like0.000009321Direct
GroEL apical domain-like0.00002754Direct
SNARE-like0.0007787Direct
Class II aaRS and biotin synthetases0.00635Inherited
Nucleic acid-binding proteins0.01382Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0176Inherited
Actin-like ATPase domain0.02365Inherited
Sm-like ribonucleoproteins0.02618Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000009321Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000009321Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01843Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000009321Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)