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Worm Phenotype (WP): pigmentation variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Variant [WBPhenotype:0000886] <2>
+ 1:   morphology variant [WBPhenotype:0000520] <5>(443|524) (443|228|63)
0:   pigmentation variant [WBPhenotype:0000521] <4>(13|6) (13|3|1)
- 1:   organism pigmentation variant [WBPhenotype:0000527] <5>(12|6) (12|3|1)
- 1:   body region pigmentation variant [WBPhenotype:0000278] <2>(0|0) (0|0|0)
- 1:   organ system pigmentation variant [WBPhenotype:0000292] <1>(0|0) (0|0|0)
- 1:   cell pigmentation variant [WBPhenotype:0000526](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0.0000005596Direct
GroEL-intermediate domain like0.0000005596Direct
GroEL apical domain-like0.000001335Direct
Cyclin-like0.00001146Direct
ARM repeat0.00008606Direct
PreATP-grasp domain0.0005167Direct
Sm-like ribonucleoproteins0.00095Direct
Glutathione synthetase ATP-binding domain-like0.002453Inherited
SNARE-like0.003215Inherited
Cysteine proteinases0.003245Inherited
Lipocalins0.004578Inherited
ClpP/crotonase0.008137Inherited
"Winged helix" DNA-binding domain0.01624Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000003403Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000009696Direct
Cyclin0.000009132Direct
Adenain-like0.00003067Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002664Direct
Fatty acid binding protein-like0.002299Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0.0000004526Direct
GroEL-intermediate domain like0.0000004526Direct
GroEL apical domain-like0.000001083Direct
Cyclin-like0.000009349Direct
ARM repeat0.00007067Direct
PreATP-grasp domain0.0004286Direct
Sm-like ribonucleoproteins0.0007921Direct
Glutathione synthetase ATP-binding domain-like0.002068Inherited
SNARE-like0.002719Inherited
Cysteine proteinases0.002745Inherited
Lipocalins0.003888Inherited
ClpP/crotonase0.006979Inherited
"Winged helix" DNA-binding domain0.01409Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000004526Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000004526Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000000577Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000004526Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)