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Worm Phenotype (WP): pigmentation variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Variant [WBPhenotype:0000886] <5>
0:   pigmentation variant [WBPhenotype:0000521] <4>(12|5) (14|3|1)
- 1:   organism pigmentation variant [WBPhenotype:0000527] <4>(11|5) (13|3|1)
- 1:   body region pigmentation variant [WBPhenotype:0000278] <2>(0|0) (0|0|0)
- 1:   organ system pigmentation variant [WBPhenotype:0000292] <1>(0|0) (0|0|0)
- 1:   cell pigmentation variant [WBPhenotype:0000526](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0.0000003895Direct
GroEL equatorial domain-like0.0000003895Direct
GroEL apical domain-like0.0000009316Direct
Cyclin-like0.00009403Direct
ARM repeat0.0001292Direct
PreATP-grasp domain0.0004127Direct
Sm-like ribonucleoproteins0.0007223Direct
Glutathione synthetase ATP-binding domain-like0.001879Inherited
SNARE-like0.002582Inherited
Lipocalins0.00398Inherited
ClpP/crotonase0.005371Inherited
"Winged helix" DNA-binding domain0.01323Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000002492Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000007122Direct
Cyclin0.000007649Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002106Direct
Fatty acid binding protein-like0.001918Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0.0000003113Direct
GroEL-intermediate domain like0.0000003113Direct
GroEL apical domain-like0.0000007472Direct
Cyclin-like0.00007662Direct
ARM repeat0.0001055Direct
PreATP-grasp domain0.0003389Direct
Sm-like ribonucleoproteins0.0005957Direct
Translation proteins SH3-like domain0.001164Inherited
Glutathione synthetase ATP-binding domain-like0.001564Inherited
SNARE-like0.002161Inherited
Lipocalins0.003351Inherited
ClpP/crotonase0.004538Inherited
"Winged helix" DNA-binding domain0.01136Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.3099Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000003113Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000003113Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0000003746Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000003113Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)