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Worm Phenotype (WP): organ system development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Variant [WBPhenotype:0000886] <5>
+ 1:   development variant [WBPhenotype:0000518] <4>(511|586) (511|253|70)
0:   organ system development variant [WBPhenotype:0000530] <9>(78|71) (81|32|12)
- 1:   reproductive system development variant [WBPhenotype:0000624] <10>(46|39) (47|21|8)
- 1:   nervous system development variant [WBPhenotype:0000623] <7>(8|6) (9|2|1)
- 1:   alimentary system development variant [WBPhenotype:0000617] <6>(12|10) (12|5|3)
- 1:   muscle system development variant [WBPhenotype:0000622] <5>(7|5) (7|2|1)
- 1:   coelomic system development variant [WBPhenotype:0000618] <3>(1|2) (1|0|0)
- 1:   epithelial system development variant [WBPhenotype:0000619] <3>(14|14) (14|6|1)
- 1:   excretory secretory system development variant [WBPhenotype:0000620] <2>(6|7) (6|1|0)
- 1:   organ senescence variant [WBPhenotype:0001740](0|0) (0|0|0)
- 1:   tube morphogenesis variant [WBPhenotype:0001848](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin alpha N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
ArfGap/RecO-like zinc finger0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Frizzled cysteine-rich domain0Direct
14-3-3 protein0Direct
ARM repeat0.00000000000008201Direct
P-loop containing nucleoside triphosphate hydrolases0.0000000000009608Direct
"Winged helix" DNA-binding domain0.000000000004462Direct
Immunoglobulin0.00000000003317Direct
RNA-binding domain, RBD0.00000000007325Direct
EGF/Laminin0.000000003262Direct
PH domain-like0.000000005501Direct
Homeodomain-like0.000000009298Direct
WD40 repeat-like0.00000003121Direct
Fibronectin type III0.0000002819Direct
Bromodomain0.0000004885Direct
Sm-like ribonucleoproteins0.0000006595Direct
PYP-like sensor domain (PAS domain)0.00001412Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001539Direct
Growth factor receptor domain0.00001818Direct
HLH, helix-loop-helix DNA-binding domain0.00002548Direct
Tubulin C-terminal domain-like0.00003404Direct
FYVE/PHD zinc finger0.00007895Direct
Protein kinase-like (PK-like)0.0001005Direct
Sec7 domain0.0001126Direct
Tubulin nucleotide-binding domain-like0.0001494Direct
Band 7/SPFH domain0.0001672Direct
HMG-box0.000274Direct
Activating enzymes of the ubiquitin-like proteins0.000309Direct
SNARE-like0.0003357Direct
Plexin repeat0.0005627Direct
KA1-like0.0005627Direct
Sema domain0.0005627Direct
Sec1/munc18-like (SM) proteins0.0005627Direct
GroEL equatorial domain-like0.000789Direct
Myosin rod fragments0.000789Direct
Cullin repeat-like0.000789Direct
GroEL-intermediate domain like0.000789Direct
E2F-DP heterodimerization region0.0008005Direct
Integrin domains0.0008005Direct
ADC-like0.0008005Direct
Cdc48 domain 2-like0.0008005Direct
Cullin homology domain0.001664Inherited
Calponin-homology domain, CH-domain0.001681Inherited
GroEL apical domain-like0.001687Inherited
beta-beta-alpha zinc fingers0.003124Inherited
Nucleic acid-binding proteins0.003138Inherited
F1F0 ATP synthase subunit C0.003298Inherited
CCCH zinc finger0.003496Inherited
Cyclin-like0.004722Inherited
Arginase/deacetylase0.007207Inherited
Histone-fold0.007659Inherited
SMAD MH1 domain0.00831Inherited
PDZ domain-like0.0173Inherited
Intermediate filament protein, coiled coil region0.01937Inherited
Lamin A/C globular tail domain0.01937Inherited
Chromo domain-like0.0226Inherited
Troponin coil-coiled subunits0.02803Inherited
Concanavalin A-like lectins/glucanases0.03335Inherited
TSP-1 type 1 repeat0.03709Inherited
BAR/IMD domain-like0.03793Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04633Inherited
TPR-like0.04706Inherited
HIT/MYND zinc finger-like0.05441Inherited
vWA-like0.07184Inherited
Ankyrin repeat0.08982Inherited
SMAD/FHA domain0.1253Inherited
SET domain0.1538Inherited
Ubiquitin-like0.1568Inherited
ABC transporter transmembrane region0.1914Inherited
Cadherin-like0.2051Inherited
Cystine-knot cytokines0.3134Inherited
Voltage-gated potassium channels0.3908Inherited
Acyl-CoA N-acyltransferases (Nat)0.3921Inherited
Nucleotide-diphospho-sugar transferases0.7963Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
F-box domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Frizzled cysteine-rich domain0Direct
Pyk2-associated protein beta ARF-GAP domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
Mo25 protein0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Laminin-type module0Direct
14-3-3 protein0Direct
Integrin domains0Direct
Canonical RBD0.000000003439Direct
Homeodomain0.00000009827Direct
Bromodomain0.000002474Direct
Pleckstrin-homology domain (PH domain)0.000003852Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000003865Direct
Fibronectin type III0.000004379Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000346Direct
WD40-repeat0.00006648Direct
I set domains0.00006929Direct
Tubulin, C-terminal domain0.0001324Direct
Erythroid transcription factor GATA-10.0001398Direct
Band 7/SPFH domain0.0001398Direct
HLH, helix-loop-helix DNA-binding domain0.0001944Direct
Sema domain0.0002117Direct
Sec7 domain0.0002117Direct
ets domain0.0003891Direct
Tubulin, GTPase domain0.0004841Direct
HMG-box0.0008667Direct
Pumilio repeat0.0008965Direct
Proteasome subunits0.0009354Direct
Plexin repeat0.001041Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.001041Inherited
SCF ubiquitin ligase complex WHB domain0.001041Inherited
Cullin repeat0.001041Inherited
PHD domain0.001213Inherited
PDZ domain0.001261Inherited
DEATH domain, DD0.001269Inherited
Cdc48 N-terminal domain-like0.001269Inherited
Cdc48 domain 2-like0.001269Inherited
Cell cycle transcription factor e2f-dp0.001269Inherited
Protein kinases, catalytic subunit0.001393Inherited
Myosin rod fragments0.001668Inherited
G proteins0.002452Inherited
Clathrin adaptor core protein0.003035Inherited
Cullin homology domain0.003035Inherited
Clathrin coat assembly domain0.003035Inherited
Paired domain0.003511Inherited
Transforming growth factor (TGF)-beta0.005227Inherited
F1F0 ATP synthase subunit C0.005227Inherited
DEP domain0.005227Inherited
Calponin-homology domain, CH-domain0.005898Inherited
Laminin G-like module0.006495Inherited
Histone deacetylase, HDAC0.006781Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.006781Inherited
Histone lysine methyltransferases0.006927Inherited
CCCH zinc finger0.01069Inherited
Group II chaperonin (CCT, TRIC), apical domain0.01284Inherited
SMAD MH1 domain0.01306Inherited
RecA protein-like (ATPase-domain)0.01306Inherited
N-acetyl transferase, NAT0.01917Inherited
Intermediate filament protein, coiled coil region0.03372Inherited
Myb/SANT domain0.04325Inherited
SMAD domain0.04325Inherited
Armadillo repeat0.04898Inherited
Nucleosome core histones0.05748Inherited
Lamin A/C globular tail domain0.06614Inherited
TBP-associated factors, TAFs0.163Inherited
Cadherin0.163Inherited
Chromo domain0.2028Inherited
ABC transporter transmembrane region0.2265Inherited
Ankyrin repeat0.2521Inherited
ABC transporter ATPase domain-like0.3848Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
ArfGap/RecO-like zinc finger0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Frizzled cysteine-rich domain0Direct
ARM repeat0.00000000000006417Direct
P-loop containing nucleoside triphosphate hydrolases0.0000000000007538Direct
"Winged helix" DNA-binding domain0.000000000003508Direct
Immunoglobulin0.00000000002614Direct
RNA-binding domain, RBD0.00000000005778Direct
EGF/Laminin0.000000002589Direct
PH domain-like0.000000004369Direct
Homeodomain-like0.000000007389Direct
WD40 repeat-like0.00000002486Direct
Fibronectin type III0.0000002259Direct
Bromodomain0.0000003921Direct
Sm-like ribonucleoproteins0.0000005302Direct
PYP-like sensor domain (PAS domain)0.00001145Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001248Direct
Growth factor receptor domain0.00001476Direct
HLH, helix-loop-helix DNA-binding domain0.00002069Direct
Tubulin C-terminal domain-like0.00002768Direct
FYVE/PHD zinc finger0.00006437Direct
Protein kinase-like (PK-like)0.00008198Direct
Sec7 domain0.00009194Direct
Tubulin nucleotide-binding domain-like0.0001221Direct
Band 7/SPFH domain0.0001365Direct
HMG-box0.0002246Direct
Activating enzymes of the ubiquitin-like proteins0.0002534Direct
SNARE-like0.0002754Direct
Sema domain0.0004637Direct
KA1-like0.0004637Direct
Sec1/munc18-like (SM) proteins0.0004637Direct
Plexin repeat0.0004637Direct
Myosin rod fragments0.0006526Direct
GroEL equatorial domain-like0.0006526Direct
Cullin repeat-like0.0006526Direct
GroEL-intermediate domain like0.0006526Direct
Cdc48 domain 2-like0.0006619Direct
Integrin domains0.0006619Direct
ADC-like0.0006619Direct
E2F-DP heterodimerization region0.0006619Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0008779Direct
SH3-domain0.0009467Direct
Cullin homology domain0.001386Inherited
Calponin-homology domain, CH-domain0.001401Inherited
GroEL apical domain-like0.001406Inherited
beta-beta-alpha zinc fingers0.002628Inherited
Nucleic acid-binding proteins0.002639Inherited
F1F0 ATP synthase subunit C0.002776Inherited
CCCH zinc finger0.002943Inherited
Cyclin-like0.003994Inherited
Arginase/deacetylase0.00613Inherited
Histone-fold0.006521Inherited
beta and beta-prime subunits of DNA dependent RNA-polymerase0.007084Inherited
SMAD MH1 domain0.007084Inherited
PDZ domain-like0.01495Inherited
Intermediate filament protein, coiled coil region0.01678Inherited
Lamin A/C globular tail domain0.01678Inherited
Chromo domain-like0.01965Inherited
Troponin coil-coiled subunits0.02448Inherited
Concanavalin A-like lectins/glucanases0.02918Inherited
TSP-1 type 1 repeat0.03253Inherited
BAR/IMD domain-like0.03328Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04082Inherited
TPR-like0.04148Inherited
HIT/MYND zinc finger-like0.04813Inherited
vWA-like0.06398Inherited
Ankyrin repeat0.08051Inherited
SMAD/FHA domain0.1135Inherited
SET domain0.1402Inherited
Ubiquitin-like0.1431Inherited
ABC transporter transmembrane region0.1756Inherited
Cadherin-like0.1887Inherited
Cystine-knot cytokines0.2933Inherited
Voltage-gated potassium channels0.3691Inherited
Acyl-CoA N-acyltransferases (Nat)0.3702Inherited
Nucleotide-diphospho-sugar transferases0.7785Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
F-box domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    57863,48403
  • 57863 - ArfGap/RecO-like zinc finger
  • 48403 - Ankyrin repeat
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0000000002247Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00000002472Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00002768Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0001221Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0001221Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0001263Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0002534Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0002754Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0004637Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.0004637Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0006526Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0006526Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.0006619Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.0006619Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0006619Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0006619Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0006619Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0006969Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.002776Inherited
    52113,52113
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 0.007084Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.01418Inherited
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.01418Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.01466Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.03063Inherited
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.03826Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.07635Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1756Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00005612Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00006173Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001268Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0004637Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0006526Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0006619Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.0006619Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.03826Inherited
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.03826Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.07635Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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