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Worm Phenotype (WP): organ system development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
0:   organ system development variant [WBPhenotype:0000530] <10>(79|72) (80|33|13)
- 1:   reproductive system development variant [WBPhenotype:0000624] <10>(48|41) (49|22|9)
- 1:   nervous system development variant [WBPhenotype:0000623] <7>(9|6) (10|2|1)
- 1:   alimentary system development variant [WBPhenotype:0000617] <6>(11|9) (11|5|3)
- 1:   muscle system development variant [WBPhenotype:0000622] <5>(7|5) (7|2|1)
- 1:   coelomic system development variant [WBPhenotype:0000618] <3>(1|2) (1|0|0)
- 1:   epithelial system development variant [WBPhenotype:0000619] <3>(14|13) (14|5|1)
- 1:   ectopic organ [WBPhenotype:0002498] <2>(0|0) (0|0|0)
- 1:   excretory secretory system development variant [WBPhenotype:0000620] <2>(6|7) (6|1|0)
- 1:   organ senescence variant [WBPhenotype:0001740](0|0) (0|0|0)
- 1:   tube morphogenesis variant [WBPhenotype:0001848](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Frizzled cysteine-rich domain0Direct
14-3-3 protein0Direct
Integrin alpha N-terminal domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
ARM repeat0.0000000000001025Direct
P-loop containing nucleoside triphosphate hydrolases0.000000000001259Direct
"Winged helix" DNA-binding domain0.000000000002005Direct
Immunoglobulin0.00000000006392Direct
RNA-binding domain, RBD0.00000000008363Direct
EGF/Laminin0.000000003853Direct
Homeodomain-like0.000000005745Direct
PH domain-like0.00000001115Direct
Bromodomain0.00000003272Direct
Fibronectin type III0.0000004198Direct
WD40 repeat-like0.0000005331Direct
Sm-like ribonucleoproteins0.0000008618Direct
Growth factor receptor domain0.000003441Direct
PYP-like sensor domain (PAS domain)0.00001663Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001776Direct
HLH, helix-loop-helix DNA-binding domain0.00003443Direct
Tubulin C-terminal domain-like0.00004206Direct
FYVE/PHD zinc finger0.0001093Direct
Sec7 domain0.0001265Direct
Tubulin nucleotide-binding domain-like0.0001803Direct
Band 7/SPFH domain0.0001983Direct
Protein kinase-like (PK-like)0.0002571Direct
Activating enzymes of the ubiquitin-like proteins0.0003531Direct
SNARE-like0.0003963Direct
Intermediate filament protein, coiled coil region0.0004242Direct
HMG-box0.0005649Direct
Sema domain0.0006291Direct
Plexin repeat0.0006291Direct
Sec1/munc18-like (SM) proteins0.0006291Direct
KA1-like0.0006291Direct
ADC-like0.0008775Direct
E2F-DP heterodimerization region0.0008775Direct
Cdc48 domain 2-like0.0008775Direct
Integrin domains0.0008775Direct
GroEL-intermediate domain like0.000897Direct
GroEL equatorial domain-like0.000897Direct
Cullin repeat-like0.000897Direct
Myosin rod fragments0.000897Direct
beta-beta-alpha zinc fingers0.0009532Direct
Cullin homology domain0.001845Inherited
GroEL apical domain-like0.001901Inherited
Calponin-homology domain, CH-domain0.002029Inherited
Lamin A/C globular tail domain0.003571Inherited
F1F0 ATP synthase subunit C0.003596Inherited
Sec63 N-terminal domain-like0.003596Inherited
CCCH zinc finger0.004147Inherited
Cyclin-like0.005558Inherited
PDZ domain-like0.006821Inherited
Arginase/deacetylase0.007914Inherited
SMAD MH1 domain0.008975Inherited
Nucleic acid-binding proteins0.009872Inherited
Histone-fold0.009874Inherited
TPR-like0.01279Inherited
Chromo domain-like0.02515Inherited
Troponin coil-coiled subunits0.02998Inherited
TSP-1 type 1 repeat0.03458Inherited
Concanavalin A-like lectins/glucanases0.03987Inherited
BAR/IMD domain-like0.04235Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.05137Inherited
HIT/MYND zinc finger-like0.05835Inherited
vWA-like0.08191Inherited
Ankyrin repeat0.09001Inherited
Ubiquitin-like0.1081Inherited
SMAD/FHA domain0.1338Inherited
Cystine-knot cytokines0.1419Inherited
SET domain0.1476Inherited
Cadherin-like0.2131Inherited
ABC transporter transmembrane region0.3525Inherited
Voltage-gated potassium channels0.4168Inherited
Acyl-CoA N-acyltransferases (Nat)0.4316Inherited
Nucleotide-diphospho-sugar transferases0.7523Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
F-box domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Pyk2-associated protein beta ARF-GAP domain0Direct
POU-specific domain0Direct
Laminin-type module0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Frizzled cysteine-rich domain0Direct
Integrin domains0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Mo25 protein0Direct
Canonical RBD0.000000002527Direct
Homeodomain0.00000003749Direct
Bromodomain0.000000182Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000004401Direct
Pleckstrin-homology domain (PH domain)0.000004733Direct
Fibronectin type III0.000005464Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00003752Direct
I set domains0.00007889Direct
Tubulin, C-terminal domain0.0001487Direct
Band 7/SPFH domain0.0001525Direct
Erythroid transcription factor GATA-10.0001525Direct
Sema domain0.0002252Direct
Sec7 domain0.0002252Direct
HLH, helix-loop-helix DNA-binding domain0.0002291Direct
PDZ domain0.0003716Direct
Pumilio repeat0.0004229Direct
ets domain0.0004229Direct
WD40-repeat0.0004944Direct
Tubulin, GTPase domain0.0005361Direct
Intermediate filament protein, coiled coil region0.0009712Direct
Proteasome subunits0.001022Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.001104Inherited
Cullin repeat0.001104Inherited
SCF ubiquitin ligase complex WHB domain0.001104Inherited
Plexin repeat0.001104Inherited
Cdc48 domain 2-like0.00133Inherited
DEATH domain, DD0.00133Inherited
Cell cycle transcription factor e2f-dp0.00133Inherited
Cdc48 N-terminal domain-like0.00133Inherited
PHD domain0.001346Inherited
Cyclin0.001607Inherited
HMG-box0.001607Inherited
Myosin rod fragments0.001785Inherited
Protein kinases, catalytic subunit0.002733Inherited
G proteins0.003088Inherited
Clathrin adaptor core protein0.0032Inherited
Clathrin coat assembly domain0.0032Inherited
Cullin homology domain0.0032Inherited
Paired domain0.003732Inherited
Histone lysine methyltransferases0.004923Inherited
Transforming growth factor (TGF)-beta0.005433Inherited
DEP domain0.005433Inherited
F1F0 ATP synthase subunit C0.005433Inherited
Calponin-homology domain, CH-domain0.006487Inherited
Laminin G-like module0.006865Inherited
Histone deacetylase, HDAC0.007103Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.007103Inherited
CCCH zinc finger0.01161Inherited
Group II chaperonin (CCT, TRIC), apical domain0.0134Inherited
SMAD MH1 domain0.0135Inherited
RecA protein-like (ATPase-domain)0.0135Inherited
N-acetyl transferase, NAT0.02029Inherited
SMAD domain0.04457Inherited
Myb/SANT domain0.04457Inherited
Armadillo repeat0.05081Inherited
Nucleosome core histones0.06343Inherited
Lamin A/C globular tail domain0.06783Inherited
TBP-associated factors, TAFs0.1653Inherited
Cadherin0.1653Inherited
Chromo domain0.2053Inherited
Ankyrin repeat0.2288Inherited
ABC transporter transmembrane region0.3909Inherited
ABC transporter ATPase domain-like0.6421Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
14-3-3 protein0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Frizzled cysteine-rich domain0Direct
ARM repeat0.00000000000008046Direct
P-loop containing nucleoside triphosphate hydrolases0.0000000000009919Direct
"Winged helix" DNA-binding domain0.00000000000158Direct
Immunoglobulin0.00000000005055Direct
RNA-binding domain, RBD0.00000000006616Direct
EGF/Laminin0.000000003068Direct
Homeodomain-like0.000000004577Direct
PH domain-like0.000000008892Direct
Bromodomain0.00000002616Direct
Fibronectin type III0.0000003381Direct
WD40 repeat-like0.0000004297Direct
Sm-like ribonucleoproteins0.000000696Direct
Growth factor receptor domain0.000002794Direct
PYP-like sensor domain (PAS domain)0.00001355Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001448Direct
HLH, helix-loop-helix DNA-binding domain0.00002812Direct
Tubulin C-terminal domain-like0.00003437Direct
FYVE/PHD zinc finger0.00008956Direct
Sec7 domain0.0001038Direct
Tubulin nucleotide-binding domain-like0.000148Direct
Band 7/SPFH domain0.0001629Direct
Protein kinase-like (PK-like)0.0002115Direct
Activating enzymes of the ubiquitin-like proteins0.000291Direct
SNARE-like0.000327Direct
Intermediate filament protein, coiled coil region0.0003503Direct
HMG-box0.000468Direct
KA1-like0.0005213Direct
Sema domain0.0005213Direct
Plexin repeat0.0005213Direct
Sec1/munc18-like (SM) proteins0.0005213Direct
Cdc48 domain 2-like0.0007299Direct
Integrin domains0.0007299Direct
E2F-DP heterodimerization region0.0007299Direct
ADC-like0.0007299Direct
GroEL equatorial domain-like0.0007461Direct
GroEL-intermediate domain like0.0007461Direct
Myosin rod fragments0.0007461Direct
Cullin repeat-like0.0007461Direct
beta-beta-alpha zinc fingers0.000793Direct
Cullin homology domain0.001545Inherited
GroEL apical domain-like0.001593Inherited
Calponin-homology domain, CH-domain0.001702Inherited
Lamin A/C globular tail domain0.003022Inherited
F1F0 ATP synthase subunit C0.003044Inherited
Sec63 N-terminal domain-like0.003044Inherited
CCCH zinc finger0.003514Inherited
Cyclin-like0.004728Inherited
PDZ domain-like0.005819Inherited
Arginase/deacetylase0.00677Inherited
beta and beta-prime subunits of DNA dependent RNA-polymerase0.007702Inherited
SMAD MH1 domain0.007702Inherited
Nucleic acid-binding proteins0.008486Inherited
Histone-fold0.008488Inherited
TPR-like0.01104Inherited
Chromo domain-like0.02199Inherited
Troponin coil-coiled subunits0.02632Inherited
TSP-1 type 1 repeat0.03043Inherited
Concanavalin A-like lectins/glucanases0.03515Inherited
BAR/IMD domain-like0.03739Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04557Inherited
HIT/MYND zinc finger-like0.0519Inherited
vWA-like0.07354Inherited
Ankyrin repeat0.08099Inherited
Ubiquitin-like0.09778Inherited
SMAD/FHA domain0.1217Inherited
Cystine-knot cytokines0.1294Inherited
SET domain0.1346Inherited
Cadherin-like0.1967Inherited
ABC transporter transmembrane region0.3324Inherited
Voltage-gated potassium channels0.3961Inherited
Acyl-CoA N-acyltransferases (Nat)0.4108Inherited
Nucleotide-diphospho-sugar transferases0.7327Inherited
F-box domain1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    57863,48403
  • 57863 - ArfGap/RecO-like zinc finger
  • 48403 - Ankyrin repeat
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0000000003625Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00000003587Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00003437Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00005495Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.000148Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.000148Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.000291Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000327Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.0005213Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0005213Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0007299Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.0007299Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0007299Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0007299Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.0007299Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0007461Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0007461Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0008467Direct
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.001593Inherited
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.003044Inherited
    52113,52113
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 0.007702Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.008306Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.01527Inherited
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.01527Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0337Inherited
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.04084Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.08078Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3324Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00007148Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00007509Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001488Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0005213Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0007299Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.0007299Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0007461Direct
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.001593Inherited
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.04084Inherited
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.04084Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.08078Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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