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Worm Phenotype (WP): organ system development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Variant [WBPhenotype:0000886] <5>
+ 1:   development variant [WBPhenotype:0000518] <4>(506|581) (506|253|70)
0:   organ system development variant [WBPhenotype:0000530] <9>(78|72) (81|32|12)
- 1:   reproductive system development variant [WBPhenotype:0000624] <10>(46|39) (48|21|8)
- 1:   nervous system development variant [WBPhenotype:0000623] <7>(8|6) (8|2|1)
- 1:   alimentary system development variant [WBPhenotype:0000617] <6>(12|9) (13|5|3)
- 1:   muscle system development variant [WBPhenotype:0000622] <5>(7|5) (7|2|1)
- 1:   coelomic system development variant [WBPhenotype:0000618] <3>(1|2) (1|0|0)
- 1:   epithelial system development variant [WBPhenotype:0000619] <3>(14|14) (14|6|1)
- 1:   excretory secretory system development variant [WBPhenotype:0000620] <2>(6|7) (6|1|0)
- 1:   organ senescence variant [WBPhenotype:0001740](0|0) (0|0|0)
- 1:   tube morphogenesis variant [WBPhenotype:0001848](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Frizzled cysteine-rich domain0Direct
ArfGap/RecO-like zinc finger0Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
ARM repeat0.00000000000008486Direct
P-loop containing nucleoside triphosphate hydrolases0.000000000001012Direct
"Winged helix" DNA-binding domain0.000000000006674Direct
Immunoglobulin0.0000000000339Direct
RNA-binding domain, RBD0.00000000007512Direct
EGF/Laminin0.000000002198Direct
PH domain-like0.000000004221Direct
Homeodomain-like0.000000009514Direct
WD40 repeat-like0.00000003196Direct
Fibronectin type III0.0000002857Direct
Bromodomain0.0000004934Direct
Sm-like ribonucleoproteins0.0000006663Direct
Growth factor receptor domain0.00001057Direct
PYP-like sensor domain (PAS domain)0.00001421Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001547Direct
HLH, helix-loop-helix DNA-binding domain0.00002574Direct
Tubulin C-terminal domain-like0.00003432Direct
FYVE/PHD zinc finger0.00007991Direct
Protein kinase-like (PK-like)0.00009543Direct
Sec7 domain0.0001131Direct
Tubulin nucleotide-binding domain-like0.0001505Direct
Band 7/SPFH domain0.0001681Direct
HMG-box0.0002758Direct
Activating enzymes of the ubiquitin-like proteins0.0003105Direct
SNARE-like0.0003375Direct
Sema domain0.0005649Direct
Sec1/munc18-like (SM) proteins0.0005649Direct
KA1-like0.0005649Direct
Plexin repeat0.0005649Direct
GroEL-intermediate domain like0.0007933Direct
Myosin rod fragments0.0007933Direct
GroEL equatorial domain-like0.0007933Direct
Cullin repeat-like0.0007933Direct
Cdc48 domain 2-like0.0008039Direct
Integrin domains0.0008039Direct
ADC-like0.0008039Direct
E2F-DP heterodimerization region0.0008039Direct
Cullin homology domain0.00167Inherited
Calponin-homology domain, CH-domain0.001691Inherited
GroEL apical domain-like0.001694Inherited
beta-beta-alpha zinc fingers0.002768Inherited
Nucleic acid-binding proteins0.003161Inherited
F1F0 ATP synthase subunit C0.00331Inherited
CCCH zinc finger0.003517Inherited
Cyclin-like0.00475Inherited
Arginase/deacetylase0.007236Inherited
Histone-fold0.007727Inherited
SMAD MH1 domain0.00834Inherited
Chromo domain-like0.01705Inherited
PDZ domain-like0.01743Inherited
Intermediate filament protein, coiled coil region0.01945Inherited
Lamin A/C globular tail domain0.01945Inherited
Troponin coil-coiled subunits0.02813Inherited
Concanavalin A-like lectins/glucanases0.03356Inherited
TSP-1 type 1 repeat0.03723Inherited
TPR-like0.04301Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04653Inherited
HIT/MYND zinc finger-like0.05462Inherited
vWA-like0.06446Inherited
BAR/IMD domain-like0.08413Inherited
Ankyrin repeat0.0904Inherited
SMAD/FHA domain0.1063Inherited
SET domain0.1543Inherited
Ubiquitin-like0.1576Inherited
ABC transporter transmembrane region0.192Inherited
Cadherin-like0.2056Inherited
Cystine-knot cytokines0.3142Inherited
Voltage-gated potassium channels0.3922Inherited
Acyl-CoA N-acyltransferases (Nat)0.3934Inherited
Nucleotide-diphospho-sugar transferases0.797Inherited
F-box domain1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Frizzled cysteine-rich domain0Direct
14-3-3 protein0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
Integrin domains0Direct
Laminin-type module0Direct
Pyk2-associated protein beta ARF-GAP domain0Direct
Mo25 protein0Direct
Canonical RBD0.000000003598Direct
Homeodomain0.0000001021Direct
Bromodomain0.000002513Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000003923Direct
Pleckstrin-homology domain (PH domain)0.00000394Direct
Fibronectin type III0.000004487Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00003495Direct
WD40-repeat0.0000686Direct
I set domains0.0000703Direct
Tubulin, C-terminal domain0.0001342Direct
Band 7/SPFH domain0.0001414Direct
Erythroid transcription factor GATA-10.0001414Direct
HLH, helix-loop-helix DNA-binding domain0.000198Direct
Sema domain0.0002132Direct
Sec7 domain0.0002132Direct
ets domain0.0003931Direct
Tubulin, GTPase domain0.0004897Direct
HMG-box0.0008762Direct
Pumilio repeat0.0009048Direct
Growth factor receptor domain0.0009446Direct
Proteasome subunits0.0009446Direct
Cullin repeat0.001048Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.001048Inherited
SCF ubiquitin ligase complex WHB domain0.001048Inherited
Plexin repeat0.001048Inherited
PHD domain0.001227Inherited
Cdc48 domain 2-like0.001277Inherited
DEATH domain, DD0.001277Inherited
Cdc48 N-terminal domain-like0.001277Inherited
Cell cycle transcription factor e2f-dp0.001277Inherited
PDZ domain0.001279Inherited
Protein kinases, catalytic subunit0.001349Inherited
Myosin rod fragments0.001682Inherited
G proteins0.002518Inherited
Clathrin adaptor core protein0.00306Inherited
Cullin homology domain0.00306Inherited
Clathrin coat assembly domain0.00306Inherited
Paired domain0.003541Inherited
DEP domain0.005256Inherited
F1F0 ATP synthase subunit C0.005256Inherited
Transforming growth factor (TGF)-beta0.005256Inherited
Calponin-homology domain, CH-domain0.005973Inherited
Laminin G-like module0.006553Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.006834Inherited
Histone deacetylase, HDAC0.006834Inherited
Histone lysine methyltransferases0.006997Inherited
CCCH zinc finger0.01081Inherited
Group II chaperonin (CCT, TRIC), apical domain0.01294Inherited
RecA protein-like (ATPase-domain)0.01315Inherited
SMAD MH1 domain0.01315Inherited
N-acetyl transferase, NAT0.02691Inherited
Intermediate filament protein, coiled coil region0.03392Inherited
Myb/SANT domain0.04353Inherited
SMAD domain0.04353Inherited
Armadillo repeat0.04932Inherited
Nucleosome core histones0.05822Inherited
Lamin A/C globular tail domain0.06651Inherited
Cadherin0.1638Inherited
Chromo domain0.1638Inherited
TBP-associated factors, TAFs0.1638Inherited
ABC transporter transmembrane region0.2279Inherited
Ankyrin repeat0.2544Inherited
ABC transporter ATPase domain-like0.3872Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
14-3-3 protein0Direct
Frizzled cysteine-rich domain0Direct
ARM repeat0.00000000000006623Direct
P-loop containing nucleoside triphosphate hydrolases0.0000000000007924Direct
"Winged helix" DNA-binding domain0.000000000005237Direct
Immunoglobulin0.00000000002665Direct
RNA-binding domain, RBD0.00000000005912Direct
EGF/Laminin0.00000000174Direct
PH domain-like0.000000003344Direct
Homeodomain-like0.000000007546Direct
WD40 repeat-like0.00000002541Direct
Fibronectin type III0.0000002285Direct
Bromodomain0.0000003952Direct
Sm-like ribonucleoproteins0.0000005346Direct
Growth factor receptor domain0.000008549Direct
PYP-like sensor domain (PAS domain)0.00001151Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001254Direct
HLH, helix-loop-helix DNA-binding domain0.00002088Direct
Tubulin C-terminal domain-like0.00002786Direct
FYVE/PHD zinc finger0.00006506Direct
Protein kinase-like (PK-like)0.00007779Direct
Sec7 domain0.00009227Direct
Tubulin nucleotide-binding domain-like0.0001229Direct
Band 7/SPFH domain0.0001373Direct
HMG-box0.0002259Direct
Activating enzymes of the ubiquitin-like proteins0.0002544Direct
SNARE-like0.0002767Direct
Sema domain0.0004651Direct
Sec1/munc18-like (SM) proteins0.0004651Direct
Plexin repeat0.0004651Direct
KA1-like0.0004651Direct
Myosin rod fragments0.0006556Direct
GroEL equatorial domain-like0.0006556Direct
Cullin repeat-like0.0006556Direct
GroEL-intermediate domain like0.0006556Direct
Integrin domains0.000664Direct
Cdc48 domain 2-like0.000664Direct
E2F-DP heterodimerization region0.000664Direct
ADC-like0.000664Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.000885Direct
SH3-domain0.0009551Direct
Cullin homology domain0.00139Inherited
Calponin-homology domain, CH-domain0.001408Inherited
GroEL apical domain-like0.001411Inherited
beta-beta-alpha zinc fingers0.002323Inherited
Nucleic acid-binding proteins0.002657Inherited
F1F0 ATP synthase subunit C0.002784Inherited
CCCH zinc finger0.002959Inherited
Cyclin-like0.004015Inherited
Arginase/deacetylase0.006149Inherited
Histone-fold0.006577Inherited
SMAD MH1 domain0.007106Inherited
beta and beta-prime subunits of DNA dependent RNA-polymerase0.007106Inherited
Chromo domain-like0.01472Inherited
PDZ domain-like0.01505Inherited
Intermediate filament protein, coiled coil region0.01684Inherited
Lamin A/C globular tail domain0.01684Inherited
Troponin coil-coiled subunits0.02454Inherited
Concanavalin A-like lectins/glucanases0.02936Inherited
TSP-1 type 1 repeat0.03263Inherited
TPR-like0.0378Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04097Inherited
HIT/MYND zinc finger-like0.04828Inherited
vWA-like0.05723Inherited
BAR/IMD domain-like0.0752Inherited
Ankyrin repeat0.08098Inherited
SMAD/FHA domain0.09573Inherited
SET domain0.1406Inherited
Ubiquitin-like0.1438Inherited
ABC transporter transmembrane region0.1761Inherited
Cadherin-like0.1892Inherited
Cystine-knot cytokines0.2939Inherited
Voltage-gated potassium channels0.3703Inherited
Acyl-CoA N-acyltransferases (Nat)0.3715Inherited
Nucleotide-diphospho-sugar transferases0.7794Inherited
F-box domain1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    57863,48403
  • 57863 - ArfGap/RecO-like zinc finger
  • 48403 - Ankyrin repeat
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0000000002277Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00000002499Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00002786Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0001229Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0001229Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0001272Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0002544Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0002767Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.0004651Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0004651Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0006556Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0006556Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000664Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000664Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.000664Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.000664Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.000664Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0007012Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.002784Inherited
    52113,52113
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 0.007106Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.01423Inherited
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.01423Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.01472Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.03073Inherited
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.03834Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.07656Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1761Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00005652Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00006212Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001275Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0004651Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0006556Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.000664Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.000664Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.03834Inherited
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.03834Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.07656Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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