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Worm Phenotype (WP): organism segment morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Variant [WBPhenotype:0000886] <4>
+ 1:   morphology variant [WBPhenotype:0000520] <9>(441|523) (441|229|64)
0:   organism segment morphology variant [WBPhenotype:0000582] <17>(67|65) (70|22|11)
- 1:   dauer body morphology variant [WBPhenotype:0001545] <8>(0|0) (0|0|0)
- 1:   tail morphology variant [WBPhenotype:0000073] <8>(13|12) (13|3|0)
- 1:   body size variant [WBPhenotype:0000231] <6>(33|37) (34|10|7)
- 1:   head morphology variant [WBPhenotype:0000071] <6>(2|0) (2|0|0)
- 1:   egg morphology variant [WBPhenotype:0000037] <4>(3|3) (3|3|0)
- 1:   pigmentation variant [WBPhenotype:0000521] <4>(12|5) (13|3|1)
- 1:   body axis morphology variant [WBPhenotype:0000581] <2>(3|3) (3|1|0)
- 1:   sexually dimorphic morphology variant [WBPhenotype:0001023] <2>(13|13) (13|4|1)
- 1:   body constriction [WBPhenotype:0000212] <1>(0|0) (0|0|0)
- 1:   body vacuole [WBPhenotype:0001395] <1>(3|3) (3|0|0)
- 1:   larval body morphology variant [WBPhenotype:0000035] <1>(1|1) (1|0|0)
- 1:   body protrusions [WBPhenotype:0000453](0|0) (0|0|0)
- 1:   body twisted [WBPhenotype:0001295](0|0) (0|0|0)
- 1:   lumpy [WBPhenotype:0000406](0|0) (0|0|0)
- 1:   maternal effect morphology variant [WBPhenotype:0002458](0|0) (0|0|0)
- 1:   organism morphology variable [WBPhenotype:0000409](1|1) (1|0|0)
- 1:   pseudocoelom morphology variant [WBPhenotype:0000949](2|0) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Multidrug efflux transporter AcrB transmembrane domain0Direct
Skp1 dimerisation domain-like8.891e-16Direct
Transducin (alpha subunit), insertion domain0.000000000000005323Direct
Homeodomain-like0.00000000123Direct
DBL homology domain (DH-domain)0.0000001218Direct
ARM repeat0.0000001876Direct
PH domain-like0.000000553Direct
Hedgehog/intein (Hint) domain0.0000006346Direct
Insulin-like0.000002508Direct
Lamin A/C globular tail domain0.000002963Direct
SMAD MH1 domain0.00002456Direct
Sema domain0.00002456Direct
SNF-like0.00003302Direct
Growth factor receptor domain0.00004331Direct
Intermediate filament protein, coiled coil region0.00005198Direct
SNARE-like0.00006663Direct
P-loop containing nucleoside triphosphate hydrolases0.00007521Direct
Zn-binding ribosomal proteins0.0001207Direct
Subtilisin-like0.0001654Direct
Cyclin-like0.0005539Direct
"Winged helix" DNA-binding domain0.000584Direct
Spectrin repeat0.0005976Direct
lambda repressor-like DNA-binding domains0.0005976Direct
Neurotransmitter-gated ion-channel transmembrane pore0.0006315Direct
Translation proteins0.0007611Direct
HLH, helix-loop-helix DNA-binding domain0.0007941Direct
Nucleotide-binding domain0.0008123Direct
Plexin repeat0.0008123Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0008123Direct
LuxS/MPP-like metallohydrolase0.001014Inherited
S-adenosylmethionine synthetase0.00108Inherited
Transducin (heterotrimeric G protein), gamma chain0.00108Inherited
Arginase/deacetylase0.001202Inherited
GroEL equatorial domain-like0.001202Inherited
GroEL-intermediate domain like0.001202Inherited
Immunoglobulin0.00144Inherited
RNA-binding domain, RBD0.001655Inherited
Multidrug resistance efflux transporter EmrE0.001793Inherited
GroEL apical domain-like0.002532Inherited
Nicotinic receptor ligand binding domain-like0.004083Inherited
TPR-like0.00414Inherited
Tim10-like0.00438Inherited
Frizzled cysteine-rich domain0.00438Inherited
Troponin coil-coiled subunits0.005247Inherited
PYP-like sensor domain (PAS domain)0.005247Inherited
PreATP-grasp domain0.009931Inherited
Thiamin diphosphate-binding fold (THDP-binding)0.009931Inherited
Heme-dependent peroxidases0.01249Inherited
Sm-like ribonucleoproteins0.01834Inherited
cAMP-binding domain-like0.01857Inherited
beta-beta-alpha zinc fingers0.01956Inherited
SMAD/FHA domain0.02245Inherited
Ankyrin repeat0.03023Inherited
FYVE/PHD zinc finger0.05699Inherited
ClpP/crotonase0.06172Inherited
Cysteine-rich domain0.06624Inherited
Lipocalins0.1004Inherited
Cysteine-rich DNA binding domain, (DM domain)0.1045Inherited
Protease propeptides/inhibitors0.1045Inherited
Glutathione synthetase ATP-binding domain-like0.137Inherited
Histone-fold0.2109Inherited
Voltage-gated potassium channels0.2468Inherited
Protein kinase-like (PK-like)0.444Inherited
POZ domain0.7289Inherited
Thioredoxin-like0.9487Inherited
GST C-terminal domain-like1Inherited
C-type lectin-like1Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RhoGDI-like0Direct
Multidrug efflux transporter AcrB transmembrane domain0Direct
D-aminoacid oxidase, N-terminal domain0Direct
POU-specific domain0Direct
Branched-chain alpha-keto acid dehydrogenase PP module0Direct
MIF4G domain-like0Direct
Sema domain0Direct
Skp1 dimerisation domain-like0.000000000000001248Direct
Transducin (alpha subunit), insertion domain0.0000000000001826Direct
Homeodomain0.000000002016Direct
G proteins0.0000005481Direct
DBL homology domain (DH-domain)0.0000009227Direct
Hedgehog C-terminal (Hog) autoprocessing domain0.000002536Direct
Pleckstrin-homology domain (PH domain)0.000002624Direct
Clathrin coat assembly domain0.0000101Direct
Insulin-like0.00001993Direct
Laminin-type module0.0000572Direct
SMAD MH1 domain0.0000572Direct
SNF-like0.00006191Direct
SMAD domain0.0000659Direct
I set domains0.0001547Direct
Intermediate filament protein, coiled coil region0.0001619Direct
Lamin A/C globular tail domain0.0002429Direct
D-aminoacid oxidase-like0.0003194Direct
Subtilases0.0003194Direct
Clathrin adaptor core protein0.0003243Direct
Growth factor receptor domain0.0004877Direct
Cyclin0.0005131Direct
Histone deacetylase, HDAC0.001059Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.001059Inherited
PDI-like0.001545Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001545Inherited
Plexin repeat0.001545Inherited
Proprotein convertase P-domain0.001754Inherited
Transducin (heterotrimeric G protein), gamma chain0.001754Inherited
S-adenosylmethionine synthetase0.001754Inherited
Glycosyl transferases group 10.001754Inherited
Troponin I0.001754Inherited
MPP-like0.00256Inherited
Group II chaperonin (CCT, TRIC), apical domain0.002613Inherited
Forkhead DNA-binding domain0.00415Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.005385Inherited
BTB/POZ domain0.005395Inherited
Spectrin repeat0.005405Inherited
Frizzled cysteine-rich domain0.00708Inherited
Tim10/DDP0.00708Inherited
Transforming growth factor (TGF)-beta0.00708Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.007972Inherited
Canonical RBD0.008653Inherited
Nicotinic receptor ligand binding domain-like0.01012Inherited
CUT domain0.01738Inherited
Myeloperoxidase-like0.02522Inherited
cAMP-binding domain0.02522Inherited
Pumilio repeat0.03007Inherited
Classic zinc finger, C2H20.03756Inherited
Tetratricopeptide repeat (TPR)0.0432Inherited
Ankyrin repeat0.1208Inherited
Cysteine-rich DNA binding domain, (DM domain)0.1566Inherited
Synaptotagmin-like (S variant)0.1838Inherited
Fatty acid binding protein-like0.1994Inherited
Nucleosome core histones0.4485Inherited
Voltage-gated potassium channels0.4766Inherited
Rhodopsin-like0.58Inherited
Protein kinases, catalytic subunit0.7779Inherited
C-type lectin domain1Inherited


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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Multidrug efflux transporter AcrB transmembrane domain0Direct
Skp1 dimerisation domain-like7.012e-16Direct
Transducin (alpha subunit), insertion domain0.0000000000000042Direct
Homeodomain-like0.0000000009838Direct
DBL homology domain (DH-domain)0.00000009829Direct
ARM repeat0.0000001517Direct
PH domain-like0.0000004486Direct
Hedgehog/intein (Hint) domain0.0000005154Direct
Insulin-like0.000002047Direct
Lamin A/C globular tail domain0.000002421Direct
Sema domain0.00002016Direct
SMAD MH1 domain0.00002016Direct
SNF-like0.00002713Direct
Growth factor receptor domain0.00003564Direct
Intermediate filament protein, coiled coil region0.00004282Direct
SNARE-like0.0000549Direct
P-loop containing nucleoside triphosphate hydrolases0.00006197Direct
Zn-binding ribosomal proteins0.00009972Direct
Subtilisin-like0.0001365Direct
Cyclin-like0.000461Direct
"Winged helix" DNA-binding domain0.0004863Direct
lambda repressor-like DNA-binding domains0.0004979Direct
Spectrin repeat0.0004979Direct
Neurotransmitter-gated ion-channel transmembrane pore0.0005264Direct
Translation proteins0.0006364Direct
HLH, helix-loop-helix DNA-binding domain0.0006642Direct
Nucleotide-binding domain0.0006794Direct
Plexin repeat0.0006794Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0006794Direct
LuxS/MPP-like metallohydrolase0.0008496Direct
S-adenosylmethionine synthetase0.0009051Direct
Transducin (heterotrimeric G protein), gamma chain0.0009051Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.0009051Direct
Arginase/deacetylase0.001007Inherited
GroEL equatorial domain-like0.001007Inherited
GroEL-intermediate domain like0.001007Inherited
Immunoglobulin0.00121Inherited
RNA-binding domain, RBD0.001392Inherited
Multidrug resistance efflux transporter EmrE0.001509Inherited
EGF/Laminin0.0021Inherited
GroEL apical domain-like0.002141Inherited
Nicotinic receptor ligand binding domain-like0.003469Inherited
TPR-like0.003518Inherited
Frizzled cysteine-rich domain0.003725Inherited
Tim10-like0.003725Inherited
Troponin coil-coiled subunits0.004471Inherited
PYP-like sensor domain (PAS domain)0.004471Inherited
PreATP-grasp domain0.008549Inherited
Thiamin diphosphate-binding fold (THDP-binding)0.008549Inherited
Heme-dependent peroxidases0.01078Inherited
Sm-like ribonucleoproteins0.01592Inherited
cAMP-binding domain-like0.01612Inherited
beta-beta-alpha zinc fingers0.01701Inherited
SMAD/FHA domain0.01959Inherited
Ankyrin repeat0.02653Inherited
Translation proteins SH3-like domain0.02994Inherited
FYVE/PHD zinc finger0.05066Inherited
ClpP/crotonase0.05498Inherited
Cysteine-rich domain0.05916Inherited
Lipocalins0.09069Inherited
Protease propeptides/inhibitors0.09446Inherited
Cysteine-rich DNA binding domain, (DM domain)0.09446Inherited
Glutathione synthetase ATP-binding domain-like0.1249Inherited
Histone-fold0.1947Inherited
Voltage-gated potassium channels0.2292Inherited
Protein kinase-like (PK-like)0.4227Inherited
POZ domain0.7085Inherited
Thioredoxin-like0.9352Inherited
GST C-terminal domain-like1Inherited
C-type lectin-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51971,54373
  • 51971 - Nucleotide-binding domain
  • 54373 - FAD-linked reductases, C-terminal domain
  • 0Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000000000000042Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.00000006999Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000004621Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.000004638Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0002131Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.0005264Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0.0008496Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.0009051Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.0009051Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0009051Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.0009051Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001007Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.001007Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.001509Inherited
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001994Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.002446Inherited
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.01078Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.01923Inherited
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0006364Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0006794Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0008849Direct
    52540,52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0009051Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.0009051Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001007Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.002141Inherited
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.003992Inherited
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.02277Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.2087Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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