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Worm Phenotype (WP): cell corpse number variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <5>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <6>(490|567) (491|248|69)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <27>(143|144) (143|64|18)
+ + + 3:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
+ + 2:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
+ 1:   apoptosis variant [WBPhenotype:0000730] <13>(50|44) (50|13|5)
0:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
- 1:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
- 1:   cell corpse number decreased [WBPhenotype:0002045](4|2) (4|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000002636Direct
Cullin repeat-like0.000000008703Direct
Integrin domains0.000005329Direct
Activating enzymes of the ubiquitin-like proteins0.000009507Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001709Direct
Calcium ATPase, transmembrane domain M0.00002411Direct
Cupredoxins0.00002492Direct
Tubby C-terminal domain-like0.00002492Direct
Lamin A/C globular tail domain0.0000681Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00007063Direct
Sec1/munc18-like (SM) proteins0.00007063Direct
Calcium ATPase, transduction domain A0.0001525Direct
POZ domain0.000369Direct
Hect, E3 ligase catalytic domain0.0005018Direct
Intermediate filament protein, coiled coil region0.001191Inherited
BAR/IMD domain-like0.01032Inherited
SH3-domain0.0168Inherited
ENTH/VHS domain0.01934Inherited
Protein kinase-like (PK-like)0.06455Inherited
Histone-fold0.07092Inherited
"Winged helix" DNA-binding domain0.1017Inherited
ARM repeat0.1165Inherited
Clathrin adaptor appendage domain0.1227Inherited
GroEL apical domain-like0.124Inherited
GroEL-intermediate domain like0.1998Inherited
GroEL equatorial domain-like0.1998Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
Cullin repeat0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Arginine methyltransferase0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Myotubularin-like phosphatases0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000009307Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.000001472Direct
Ephrin ectodomain0.000009673Direct
BAR domain0.00004501Direct
Ubiquitin activating enzymes (UBA)0.00004501Direct
BTB/POZ domain0.00006867Direct
Sec1/munc18-like (SM) proteins0.000127Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000127Direct
Calcium ATPase, transduction domain A0.0003899Direct
Hect, E3 ligase catalytic domain0.0008926Direct
Intermediate filament protein, coiled coil region0.002106Inherited
FYVE, a phosphatidylinositol-3-phosphate binding domain0.003079Inherited
SH3-domain0.01833Inherited
Nucleosome core histones0.04175Inherited
RecA protein-like (ATPase-domain)0.06558Inherited
Phosphotyrosine-binding domain (PTB)0.06558Inherited
Armadillo repeat0.1194Inherited
Clathrin adaptor core protein0.1194Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1248Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.2003Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DLC0Direct
Skp1 dimerisation domain-like0Direct
PX domain0Direct
Cullin homology domain0.0000000002078Direct
Cullin repeat-like0.000000006903Direct
Integrin domains0.000004305Direct
Activating enzymes of the ubiquitin-like proteins0.000007685Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001385Direct
Calcium ATPase, transmembrane domain M0.00001956Direct
Cupredoxins0.00002022Direct
Tubby C-terminal domain-like0.00002022Direct
Lamin A/C globular tail domain0.0000554Direct
Sec1/munc18-like (SM) proteins0.00005745Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005745Direct
Calcium ATPase, transduction domain A0.0001245Direct
POZ domain0.0003028Direct
Hect, E3 ligase catalytic domain0.0004132Direct
Intermediate filament protein, coiled coil region0.0009872Direct
BAR/IMD domain-like0.00882Inherited
SH3-domain0.0145Inherited
ENTH/VHS domain0.01675Inherited
Protein kinase-like (PK-like)0.05731Inherited
Histone-fold0.06308Inherited
"Winged helix" DNA-binding domain0.09141Inherited
ARM repeat0.1052Inherited
Clathrin adaptor appendage domain0.111Inherited
GroEL apical domain-like0.1122Inherited
GroEL equatorial domain-like0.1836Inherited
GroEL-intermediate domain like0.1836Inherited
SNARE-like0.2921Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.00001385Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00002022Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001361Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.002622Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1836Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1836Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000009604Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0009872Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1836Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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