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Worm Phenotype (WP): cell corpse number variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <5>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <6>(495|573) (496|248|69)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <27>(145|145) (146|64|18)
+ + + 3:   cell death variant [WBPhenotype:0000729] <3>(58|51) (59|17|5)
+ + 2:   programmed cell death variant [WBPhenotype:0001172] <3>(56|48) (57|16|5)
+ 1:   apoptosis variant [WBPhenotype:0000730] <13>(51|44) (51|13|5)
0:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
- 1:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
- 1:   cell corpse number decreased [WBPhenotype:0002045](4|2) (4|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
Skp1 dimerisation domain-like0Direct
PX domain0Direct
Cullin homology domain0.0000000002562Direct
Cullin repeat-like0.000000008465Direct
Integrin domains0.000005239Direct
Activating enzymes of the ubiquitin-like proteins0.00000932Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001665Direct
Calcium ATPase, transmembrane domain M0.0000235Direct
Tubby C-terminal domain-like0.00002453Direct
Cupredoxins0.00002453Direct
Lamin A/C globular tail domain0.00006676Direct
Sec1/munc18-like (SM) proteins0.00006951Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00006951Direct
Calcium ATPase, transduction domain A0.0001492Direct
POZ domain0.0003529Direct
Hect, E3 ligase catalytic domain0.0004948Direct
Intermediate filament protein, coiled coil region0.001173Inherited
BAR/IMD domain-like0.009983Inherited
SH3-domain0.0161Inherited
ENTH/VHS domain0.01881Inherited
Protein kinase-like (PK-like)0.06049Inherited
Histone-fold0.0682Inherited
ARM repeat0.1109Inherited
Clathrin adaptor appendage domain0.1209Inherited
GroEL apical domain-like0.1216Inherited
"Winged helix" DNA-binding domain0.1584Inherited
GroEL equatorial domain-like0.1966Inherited
GroEL-intermediate domain like0.1966Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Arginine methyltransferase0Direct
Integrin domains0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Skp1 dimerisation domain-like0Direct
Myotubularin-like phosphatases0Direct
Cullin repeat0Direct
PX domain0Direct
SCF ubiquitin ligase complex WHB domain0Direct
DLC0Direct
Cullin homology domain0.0000000009085Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.000001443Direct
Ephrin ectodomain0.000009529Direct
Ubiquitin activating enzymes (UBA)0.00004442Direct
BAR domain0.00004442Direct
BTB/POZ domain0.00006507Direct
Sec1/munc18-like (SM) proteins0.0001253Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001253Direct
Calcium ATPase, transduction domain A0.0003828Direct
Hect, E3 ligase catalytic domain0.0008816Direct
Intermediate filament protein, coiled coil region0.00208Inherited
FYVE, a phosphatidylinositol-3-phosphate binding domain0.002956Inherited
SH3-domain0.01771Inherited
Nucleosome core histones0.04035Inherited
Phosphotyrosine-binding domain (PTB)0.06451Inherited
RecA protein-like (ATPase-domain)0.06451Inherited
Armadillo repeat0.1178Inherited
Clathrin adaptor core protein0.1178Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1227Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1979Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
PX domain0Direct
DLC0Direct
Cullin homology domain0.0000000002025Direct
Cullin repeat-like0.000000006727Direct
Integrin domains0.000004239Direct
Activating enzymes of the ubiquitin-like proteins0.000007544Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001351Direct
Calcium ATPase, transmembrane domain M0.00001909Direct
Cupredoxins0.00001992Direct
Tubby C-terminal domain-like0.00001992Direct
Lamin A/C globular tail domain0.00005438Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005661Direct
Sec1/munc18-like (SM) proteins0.00005661Direct
Calcium ATPase, transduction domain A0.0001219Direct
POZ domain0.0002898Direct
Hect, E3 ligase catalytic domain0.0004077Direct
Intermediate filament protein, coiled coil region0.0009734Direct
BAR/IMD domain-like0.008536Inherited
SH3-domain0.0139Inherited
ENTH/VHS domain0.01629Inherited
Protein kinase-like (PK-like)0.05366Inherited
Histone-fold0.06068Inherited
ARM repeat0.1Inherited
Clathrin adaptor appendage domain0.1093Inherited
GroEL apical domain-like0.11Inherited
"Winged helix" DNA-binding domain0.1446Inherited
GroEL-intermediate domain like0.1805Inherited
GroEL equatorial domain-like0.1805Inherited
SNARE-like0.2884Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.00001351Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00001992Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001331Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.002587Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1805Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1805Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000009369Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0009734Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1805Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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