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Worm Phenotype (WP): reproductive system morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(441|523) (441|229|64)
+ 1:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|47|16)
0:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|17|6)
- 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
- 1:   hermaphrodite reproductive system morphology variant [WBPhenotype:0001335] <3>(22|22) (25|7|2)
- 1:   cloacal morphology variant [WBPhenotype:0000908] <2>(0|0) (0|0|0)
- 1:   connection of gonad variant [WBPhenotype:0000665](0|0) (0|0|0)
- 1:   male reproductive system morphology variant [WBPhenotype:0001306](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nop domain0Direct
14-3-3 protein0Direct
GroEL equatorial domain-like0Direct
GroEL apical domain-like0.000000001454Direct
Multidrug efflux transporter AcrB transmembrane domain0.000004031Direct
HMG-box0.00002295Direct
Retrovirus zinc finger-like domains0.00002858Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00008163Direct
Sm-like ribonucleoproteins0.000189Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0003193Direct
RNA-binding domain, RBD0.0003272Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0004101Direct
RBP11-like subunits of RNA polymerase0.000504Direct
GINS helical bundle-like0.000504Direct
"Winged helix" DNA-binding domain0.0005602Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0008882Direct
Cullin homology domain0.000956Direct
Zn-binding ribosomal proteins0.000956Direct
S15/NS1 RNA-binding domain0.002108Inherited
Class II aaRS ABD-related0.002196Inherited
Nucleic acid-binding proteins0.003058Inherited
Translation proteins0.003229Inherited
L30e-like0.004277Inherited
TAZ domain0.005367Inherited
Translational machinery components0.005367Inherited
WD40 repeat-like0.009836Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01183Inherited
Class II aaRS and biotin synthetases0.01746Inherited
Translation proteins SH3-like domain0.02721Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02915Inherited
Histone-fold0.03467Inherited
ARM repeat0.03502Inherited
P-loop containing nucleoside triphosphate hydrolases0.09267Inherited
Activating enzymes of the ubiquitin-like proteins0.101Inherited
Prefoldin0.101Inherited
Smc hinge domain0.2347Inherited
Subtilisin-like0.2347Inherited
S-adenosylmethionine synthetase0.2347Inherited
Nucleotide-diphospho-sugar transferases0.422Inherited
Cysteine-rich domain0.7627Inherited
Tubulin nucleotide-binding domain-like0.8422Inherited
beta-beta-alpha zinc fingers0.8901Inherited
Tubulin C-terminal domain-like0.9277Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
RNA-polymerase beta0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
MIF4G domain-like0Direct
Nop domain0Direct
14-3-3 protein0Direct
POU-specific domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Proteasome subunits0.000000008441Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000004639Direct
Multidrug efflux transporter AcrB transmembrane domain0.000008817Direct
Laminin-type module0.00001644Direct
Tandem AAA-ATPase domain0.00005186Direct
HMG-box0.00008513Direct
Retrovirus zinc finger-like domains0.00009296Direct
Ubiquitin activating enzymes (UBA)0.0001141Direct
Canonical RBD0.000147Direct
RecA protein-like (ATPase-domain)0.0005741Direct
Anticodon-binding domain0.000777Direct
Glycosyl transferases group 10.000777Direct
Anticodon-binding domain of Class II aaRS0.000777Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.001563Inherited
WD40-repeat0.00288Inherited
L30e/L7ae ribosomal proteins0.003249Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.003876Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.02367Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0439Inherited
Elongation factors0.04914Inherited
Forkhead DNA-binding domain0.05805Inherited
Actin/HSP700.06165Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.06345Inherited
Nucleosome core histones0.07162Inherited
Translational machinery components0.09016Inherited
Prefoldin0.1401Inherited
Cold shock DNA-binding domain-like0.1595Inherited
Proprotein convertase P-domain0.2164Inherited
S-adenosylmethionine synthetase0.2164Inherited
Subtilases0.2164Inherited
Chromo domain0.2164Inherited
Smc hinge domain0.2164Inherited
Cyclin0.3675Inherited
Clathrin adaptor core protein0.4819Inherited
I set domains0.5206Inherited
Tubulin, GTPase domain0.827Inherited
Tubulin, C-terminal domain0.9158Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
Nop domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
GroEL apical domain-like0.000000001163Direct
Multidrug efflux transporter AcrB transmembrane domain0.000003294Direct
HMG-box0.00001883Direct
Retrovirus zinc finger-like domains0.00002347Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006731Direct
Sm-like ribonucleoproteins0.0001562Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0002647Direct
RNA-binding domain, RBD0.0002713Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003405Direct
GINS helical bundle-like0.0004188Direct
RBP11-like subunits of RNA polymerase0.0004188Direct
"Winged helix" DNA-binding domain0.0004664Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0007435Direct
Cullin homology domain0.0008009Direct
Zn-binding ribosomal proteins0.0008009Direct
S15/NS1 RNA-binding domain0.001778Inherited
Class II aaRS ABD-related0.001854Inherited
Nucleic acid-binding proteins0.00259Inherited
Translation proteins0.002737Inherited
L30e-like0.003637Inherited
Translational machinery components0.004571Inherited
TAZ domain0.004571Inherited
WD40 repeat-like0.008467Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0102Inherited
Class II aaRS and biotin synthetases0.01514Inherited
Translation proteins SH3-like domain0.02383Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02556Inherited
Histone-fold0.03053Inherited
ARM repeat0.03084Inherited
Chromo domain-like0.05845Inherited
P-loop containing nucleoside triphosphate hydrolases0.08348Inherited
Activating enzymes of the ubiquitin-like proteins0.09117Inherited
Prefoldin0.09117Inherited
Subtilisin-like0.2175Inherited
Smc hinge domain0.2175Inherited
S-adenosylmethionine synthetase0.2175Inherited
Nucleotide-diphospho-sugar transferases0.4006Inherited
Growth factor receptor domain0.743Inherited
Cysteine-rich domain0.743Inherited
Tubulin nucleotide-binding domain-like0.8245Inherited
beta-beta-alpha zinc fingers0.8743Inherited
Tubulin C-terminal domain-like0.9135Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001304Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003405Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0004188Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0004188Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.0008009Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001778Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.009273Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01769Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02383Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02556Inherited
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.2175Inherited
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.2175Inherited
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.2175Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.8245Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001304Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003405Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02556Inherited
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.2175Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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