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Worm Phenotype (WP): reproductive system morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ 1:   organ system morphology variant [WBPhenotype:0000534] <9>(99|104) (101|47|17)
0:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (50|17|6)
- 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
- 1:   hermaphrodite reproductive system morphology variant [WBPhenotype:0001335] <3>(22|22) (24|7|2)
- 1:   cloacal morphology variant [WBPhenotype:0000908] <2>(0|0) (0|0|0)
- 1:   connection of gonad variant [WBPhenotype:0000665](0|0) (0|0|0)
- 1:   male reproductive system morphology variant [WBPhenotype:0001306](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Ribosomal proteins S24e, L23 and L15e0Direct
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Nop domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000001576Direct
Multidrug efflux transporter AcrB transmembrane domain0.000003046Direct
HMG-box0.00002457Direct
Retrovirus zinc finger-like domains0.00003043Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00008816Direct
Sm-like ribonucleoproteins0.0002007Direct
RNA-binding domain, RBD0.0002511Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0003316Direct
"Winged helix" DNA-binding domain0.0004213Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0004279Direct
GINS helical bundle-like0.0005189Direct
RBP11-like subunits of RNA polymerase0.0005189Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0009285Direct
Cullin homology domain0.0009944Direct
Zn-binding ribosomal proteins0.0009944Direct
S15/NS1 RNA-binding domain0.002173Inherited
Class II aaRS ABD-related0.002277Inherited
Nucleic acid-binding proteins0.002498Inherited
Translation proteins0.003405Inherited
L30e-like0.004431Inherited
TAZ domain0.005541Inherited
Translational machinery components0.005541Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01224Inherited
WD40 repeat-like0.01289Inherited
Class II aaRS and biotin synthetases0.01593Inherited
Translation proteins SH3-like domain0.02515Inherited
ARM repeat0.02751Inherited
Histone-fold0.02996Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.03003Inherited
Prefoldin0.09599Inherited
Activating enzymes of the ubiquitin-like proteins0.09599Inherited
P-loop containing nucleoside triphosphate hydrolases0.1111Inherited
Smc hinge domain0.2279Inherited
S-adenosylmethionine synthetase0.2279Inherited
Subtilisin-like0.2279Inherited
Nucleotide-diphospho-sugar transferases0.4313Inherited
Cysteine-rich domain0.7474Inherited
Tubulin nucleotide-binding domain-like0.8294Inherited
Tubulin C-terminal domain-like0.9203Inherited
beta-beta-alpha zinc fingers0.923Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0Direct
Nop domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
RNA-polymerase beta0Direct
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
MIF4G domain-like0Direct
Integrin domains0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.000000009192Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000004955Direct
Multidrug efflux transporter AcrB transmembrane domain0.000007222Direct
Laminin-type module0.00001714Direct
HMG-box0.00009056Direct
Tandem AAA-ATPase domain0.00009363Direct
Retrovirus zinc finger-like domains0.00009841Direct
Ubiquitin activating enzymes (UBA)0.0001181Direct
Canonical RBD0.0001203Direct
RecA protein-like (ATPase-domain)0.0005927Direct
Anticodon-binding domain0.0007974Direct
Glycosyl transferases group 10.0007974Direct
Anticodon-binding domain of Class II aaRS0.0007974Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.001627Inherited
L30e/L7ae ribosomal proteins0.003327Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.003986Inherited
WD40-repeat0.004921Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.02214Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.04499Inherited
Elongation factors0.05067Inherited
Forkhead DNA-binding domain0.05525Inherited
Actin/HSP700.05722Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.06482Inherited
Nucleosome core histones0.06504Inherited
Translational machinery components0.08657Inherited
Prefoldin0.1349Inherited
Cold shock DNA-binding domain-like0.1512Inherited
Smc hinge domain0.2106Inherited
Proprotein convertase P-domain0.2106Inherited
Subtilases0.2106Inherited
Chromo domain0.2106Inherited
S-adenosylmethionine synthetase0.2106Inherited
Cyclin0.3565Inherited
Clathrin adaptor core protein0.4736Inherited
I set domains0.5063Inherited
Tubulin, GTPase domain0.817Inherited
Tubulin, C-terminal domain0.9081Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
Nop domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000001252Direct
Multidrug efflux transporter AcrB transmembrane domain0.000002473Direct
HMG-box0.00002005Direct
Retrovirus zinc finger-like domains0.00002484Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000722Direct
Sm-like ribonucleoproteins0.0001648Direct
RNA-binding domain, RBD0.0002065Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0002733Direct
"Winged helix" DNA-binding domain0.0003479Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003533Direct
GINS helical bundle-like0.0004294Direct
RBP11-like subunits of RNA polymerase0.0004294Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0007724Direct
Zn-binding ribosomal proteins0.0008277Direct
Cullin homology domain0.0008277Direct
S15/NS1 RNA-binding domain0.001825Inherited
Class II aaRS ABD-related0.001914Inherited
Nucleic acid-binding proteins0.002103Inherited
Translation proteins0.002879Inherited
L30e-like0.003758Inherited
Translational machinery components0.004713Inherited
TAZ domain0.004713Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01056Inherited
WD40 repeat-like0.01113Inherited
Class II aaRS and biotin synthetases0.01381Inherited
Translation proteins SH3-like domain0.02199Inherited
ARM repeat0.02411Inherited
Histone-fold0.0263Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02636Inherited
Chromo domain-like0.05506Inherited
Prefoldin0.08657Inherited
Activating enzymes of the ubiquitin-like proteins0.08657Inherited
P-loop containing nucleoside triphosphate hydrolases0.1005Inherited
S-adenosylmethionine synthetase0.2108Inherited
Subtilisin-like0.2108Inherited
Smc hinge domain0.2108Inherited
Nucleotide-diphospho-sugar transferases0.4105Inherited
Cysteine-rich domain0.7276Inherited
Tubulin nucleotide-binding domain-like0.8116Inherited
Tubulin C-terminal domain-like0.9056Inherited
beta-beta-alpha zinc fingers0.9085Inherited
Protein kinase-like (PK-like)1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001356Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003533Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0004294Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0004294Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.0008277Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001825Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.009564Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01843Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02199Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02636Inherited
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.2108Inherited
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.2108Inherited
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.2108Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.8116Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001356Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003533Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02636Inherited
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.2108Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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