SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): alimentary system development variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <4>(511|586) (511|253|70)
+ 1:   organ system development variant [WBPhenotype:0000530] <9>(78|71) (81|32|12)
0:   alimentary system development variant [WBPhenotype:0000617] <6>(12|10) (12|5|3)
- 1:   pharyngeal development variant [WBPhenotype:0000707] <8>(4|3) (4|1|0)
- 1:   intestinal development variant [WBPhenotype:0000708] <4>(10|9) (10|5|3)
- 1:   anus development variant [WBPhenotype:0000094](0|0) (0|0|0)
- 1:   cloacal development variant [WBPhenotype:0000096](0|0) (0|0|0)
- 1:   pharyngeal intestinal valve development variant [WBPhenotype:0000098](0|0) (0|0|0)
- 1:   rectal development variant [WBPhenotype:0000347](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.0000001587Direct
Histone-fold0.000001627Direct
RNA-binding domain, RBD0.0006361Direct
ABC transporter transmembrane region0.001596Inherited
CCCH zinc finger0.01074Inherited
Nucleotide-diphospho-sugar transferases0.04654Inherited
BAR/IMD domain-like0.08348Inherited
SNARE-like0.08348Inherited
Bromodomain0.2479Inherited
WD40 repeat-like0.3763Inherited
FYVE/PHD zinc finger0.4909Inherited
Protein kinase-like (PK-like)0.5955Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0.00000007698Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000313Direct
Canonical RBD0.0004868Direct
ABC transporter transmembrane region0.002034Inherited
Clathrin coat assembly domain0.004804Inherited
CCCH zinc finger0.01009Inherited
ABC transporter ATPase domain-like0.01781Inherited
Bromodomain0.2411Inherited
WD40-repeat0.2595Inherited
Protein kinases, catalytic subunit0.7233Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.0000001269Direct
Histone-fold0.000001313Direct
RNA-binding domain, RBD0.0005252Direct
ABC transporter transmembrane region0.00133Inherited
CCCH zinc finger0.0092Inherited
Nucleotide-diphospho-sugar transferases0.041Inherited
SNARE-like0.07468Inherited
BAR/IMD domain-like0.07468Inherited
Bromodomain0.2298Inherited
WD40 repeat-like0.3549Inherited
FYVE/PHD zinc finger0.4684Inherited
Protein kinase-like (PK-like)0.5733Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0001651Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.001056Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00133Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1189Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.1713Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0001651Direct
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0001651Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1189Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)