SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): alimentary system development variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <4>(511|586) (511|253|70)
+ 1:   organ system development variant [WBPhenotype:0000530] <9>(78|71) (81|32|12)
0:   alimentary system development variant [WBPhenotype:0000617] <6>(12|10) (12|5|3)
- 1:   pharyngeal development variant [WBPhenotype:0000707] <8>(4|3) (4|1|0)
- 1:   intestinal development variant [WBPhenotype:0000708] <4>(10|9) (10|5|3)
- 1:   anus development variant [WBPhenotype:0000094](0|0) (0|0|0)
- 1:   cloacal development variant [WBPhenotype:0000096](0|0) (0|0|0)
- 1:   pharyngeal intestinal valve development variant [WBPhenotype:0000098](0|0) (0|0|0)
- 1:   rectal development variant [WBPhenotype:0000347](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.0000001575Direct
Histone-fold0.000001612Direct
RNA-binding domain, RBD0.0006303Direct
ABC transporter transmembrane region0.001601Inherited
CCCH zinc finger0.0107Inherited
Nucleotide-diphospho-sugar transferases0.04662Inherited
BAR/IMD domain-like0.08335Inherited
SNARE-like0.08335Inherited
Bromodomain0.2473Inherited
WD40 repeat-like0.3749Inherited
FYVE/PHD zinc finger0.4905Inherited
Protein kinase-like (PK-like)0.5941Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0.00000007744Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000003105Direct
Canonical RBD0.000481Direct
ABC transporter transmembrane region0.00204Inherited
Clathrin coat assembly domain0.004791Inherited
CCCH zinc finger0.01004Inherited
ABC transporter ATPase domain-like0.01786Inherited
Bromodomain0.2405Inherited
WD40-repeat0.2583Inherited
Protein kinases, catalytic subunit0.7214Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.0000001259Direct
Histone-fold0.0000013Direct
RNA-binding domain, RBD0.0005202Direct
ABC transporter transmembrane region0.001333Inherited
CCCH zinc finger0.009166Inherited
Nucleotide-diphospho-sugar transferases0.04106Inherited
SNARE-like0.07455Inherited
BAR/IMD domain-like0.07455Inherited
Bromodomain0.2292Inherited
WD40 repeat-like0.3537Inherited
FYVE/PHD zinc finger0.4679Inherited
Protein kinase-like (PK-like)0.572Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0001655Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.001053Inherited
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.001333Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1187Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.171Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.0001655Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0001655Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1187Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)