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Worm Phenotype (WP): reproductive system development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <4>(506|581) (506|253|70)
+ 1:   organ system development variant [WBPhenotype:0000530] <9>(78|72) (81|32|12)
0:   reproductive system development variant [WBPhenotype:0000624] <10>(46|39) (48|21|8)
- 1:   vulva development variant [WBPhenotype:0000699] <3>(17|15) (17|3|1)
- 1:   copulatory structure development variant [WBPhenotype:0000429] <2>(0|0) (0|0|0)
- 1:   gonad development variant [WBPhenotype:0000691] <2>(18|14) (19|8|3)
- 1:   sex muscle development variant [WBPhenotype:0000669] <2>(0|0) (0|0|0)
- 1:   vulva uterus connection defective [WBPhenotype:0000283] <2>(9|7) (9|7|3)
- 1:   feminization of XX and XO animals [WBPhenotype:0000687] <1>(1|0) (1|0|0)
- 1:   fewer eggs in utero [WBPhenotype:0002019](0|0) (0|0|0)
- 1:   gonad migration variant [WBPhenotype:0000690](0|1) (0|0|0)
- 1:   no uterus [WBPhenotype:0000401](0|0) (0|0|0)
- 1:   sexual maturation defective [WBPhenotype:0000434](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat-like0.00003565Direct
Sema domain0.00003943Direct
Plexin repeat0.00003943Direct
Cdc48 domain 2-like0.00009275Direct
Integrin domains0.00009275Direct
ADC-like0.00009275Direct
E2F-DP heterodimerization region0.00009275Direct
Cullin homology domain0.0001247Direct
F1F0 ATP synthase subunit C0.0004104Direct
Immunoglobulin0.0006237Direct
Chromo domain-like0.0007667Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001912Inherited
Sm-like ribonucleoproteins0.005265Inherited
Bromodomain0.008864Inherited
HMG-box0.02497Inherited
Fibronectin type III0.02693Inherited
FYVE/PHD zinc finger0.039Inherited
SET domain0.04178Inherited
Acyl-CoA N-acyltransferases (Nat)0.04328Inherited
Cadherin-like0.04408Inherited
EGF/Laminin0.05842Inherited
WD40 repeat-like0.07402Inherited
Cystine-knot cytokines0.07782Inherited
Nucleic acid-binding proteins0.07925Inherited
Cyclin-like0.09595Inherited
GroEL-intermediate domain like0.1142Inherited
GroEL apical domain-like0.1142Inherited
GroEL equatorial domain-like0.1142Inherited
HIT/MYND zinc finger-like0.1865Inherited
Arginase/deacetylase0.1865Inherited
P-loop containing nucleoside triphosphate hydrolases0.207Inherited
TPR-like0.2406Inherited
Protein kinase-like (PK-like)0.3603Inherited
"Winged helix" DNA-binding domain0.4951Inherited
SNARE-like0.5115Inherited
Nucleotide-diphospho-sugar transferases0.5875Inherited
Homeodomain-like0.9237Inherited
Tubulin nucleotide-binding domain-like0.9239Inherited
TSP-1 type 1 repeat0.9239Inherited
NAD(P)-binding Rossmann-fold domains0.9437Inherited
F-box domain0.974Inherited
Tubulin C-terminal domain-like0.9948Inherited
RNA-binding domain, RBD1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
PHD domain0.0000103Direct
Sema domain0.00001342Direct
Proteasome subunits0.00001702Direct
Cullin repeat0.00007172Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00007172Direct
SCF ubiquitin ligase complex WHB domain0.00007172Direct
Plexin repeat0.00007172Direct
Cdc48 domain 2-like0.0001432Direct
Cdc48 N-terminal domain-like0.0001432Direct
Cell cycle transcription factor e2f-dp0.0001432Direct
Cullin homology domain0.000225Direct
F1F0 ATP synthase subunit C0.0006317Direct
Transforming growth factor (TGF)-beta0.0006317Direct
N-acetyl transferase, NAT0.001211Inherited
RecA protein-like (ATPase-domain)0.001692Inherited
Armadillo repeat0.005122Inherited
I set domains0.00691Inherited
Bromodomain0.00691Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.01182Inherited
HMG-box0.02016Inherited
Fibronectin type III0.02146Inherited
Cadherin0.031Inherited
Chromo domain0.031Inherited
TBP-associated factors, TAFs0.031Inherited
Histone lysine methyltransferases0.03431Inherited
Pumilio repeat0.05795Inherited
WD40-repeat0.07554Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.164Inherited
Group II chaperonin (CCT, TRIC), apical domain0.164Inherited
Clathrin adaptor core protein0.164Inherited
Histone deacetylase, HDAC0.164Inherited
Protein kinases, catalytic subunit0.3227Inherited
PDZ domain0.4749Inherited
Homeodomain0.8077Inherited
Tubulin, GTPase domain0.9042Inherited
Tubulin, C-terminal domain0.9817Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Cullin repeat-like0.00002894Direct
Sema domain0.00003202Direct
Plexin repeat0.00003202Direct
Integrin domains0.00007561Direct
Cdc48 domain 2-like0.00007561Direct
E2F-DP heterodimerization region0.00007561Direct
ADC-like0.00007561Direct
Cullin homology domain0.0001018Direct
F1F0 ATP synthase subunit C0.0003372Direct
Immunoglobulin0.0005143Direct
Chromo domain-like0.0006333Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0009151Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001595Inherited
Sm-like ribonucleoproteins0.004456Inherited
Bromodomain0.007562Inherited
HMG-box0.02174Inherited
Fibronectin type III0.02348Inherited
FYVE/PHD zinc finger0.03422Inherited
SET domain0.03669Inherited
Acyl-CoA N-acyltransferases (Nat)0.03805Inherited
Cadherin-like0.03874Inherited
EGF/Laminin0.05174Inherited
WD40 repeat-like0.06591Inherited
Cystine-knot cytokines0.0694Inherited
Nucleic acid-binding proteins0.07073Inherited
Cyclin-like0.0861Inherited
GroEL equatorial domain-like0.103Inherited
GroEL-intermediate domain like0.103Inherited
GroEL apical domain-like0.103Inherited
Arginase/deacetylase0.1709Inherited
HIT/MYND zinc finger-like0.1709Inherited
P-loop containing nucleoside triphosphate hydrolases0.1905Inherited
TPR-like0.2226Inherited
vWA-like0.2557Inherited
Protein kinase-like (PK-like)0.3391Inherited
"Winged helix" DNA-binding domain0.4723Inherited
SNARE-like0.4887Inherited
Nucleotide-diphospho-sugar transferases0.5651Inherited
Homeodomain-like0.9113Inherited
TSP-1 type 1 repeat0.9115Inherited
Tubulin nucleotide-binding domain-like0.9115Inherited
NAD(P)-binding Rossmann-fold domains0.932Inherited
F-box domain0.964Inherited
Tubulin C-terminal domain-like0.9852Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0000197Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.00003202Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003202Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00007561Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00007561Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00007561Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.0003372Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.001943Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01288Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.07073Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0861Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0861Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.103Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.103Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.103Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.286Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.9115Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003202Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.004456Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01288Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.02174Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.06163Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.103Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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