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Worm Phenotype (WP): reproductive system development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <4>(511|586) (511|253|70)
+ 1:   organ system development variant [WBPhenotype:0000530] <9>(80|72) (81|31|12)
0:   reproductive system development variant [WBPhenotype:0000624] <10>(47|40) (50|20|8)
- 1:   vulva development variant [WBPhenotype:0000699] <3>(17|15) (18|3|1)
- 1:   copulatory structure development variant [WBPhenotype:0000429] <2>(0|0) (0|0|0)
- 1:   gonad development variant [WBPhenotype:0000691] <2>(18|14) (19|8|3)
- 1:   sex muscle development variant [WBPhenotype:0000669] <2>(0|0) (0|0|0)
- 1:   vulva uterus connection defective [WBPhenotype:0000283] <2>(10|8) (10|6|3)
- 1:   feminization of XX and XO animals [WBPhenotype:0000687] <1>(1|0) (1|0|0)
- 1:   fewer eggs in utero [WBPhenotype:0002019](0|0) (0|0|0)
- 1:   gonad migration variant [WBPhenotype:0000690](0|1) (0|0|0)
- 1:   no uterus [WBPhenotype:0000401](0|0) (0|0|0)
- 1:   sexual maturation defective [WBPhenotype:0000434](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
Cullin repeat-like0.00003328Direct
Sema domain0.00003718Direct
Plexin repeat0.00003718Direct
ADC-like0.00008845Direct
Integrin domains0.00008845Direct
Cdc48 domain 2-like0.00008845Direct
E2F-DP heterodimerization region0.00008845Direct
Cullin homology domain0.0001177Direct
F1F0 ATP synthase subunit C0.0003919Direct
Immunoglobulin0.0006655Direct
Chromo domain-like0.00101Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00177Inherited
Sm-like ribonucleoproteins0.005426Inherited
Bromodomain0.009114Inherited
HMG-box0.02552Inherited
Fibronectin type III0.02783Inherited
FYVE/PHD zinc finger0.04021Inherited
Acyl-CoA N-acyltransferases (Nat)0.04068Inherited
Cadherin-like0.04242Inherited
SET domain0.04246Inherited
WD40 repeat-like0.05093Inherited
EGF/Laminin0.06048Inherited
Cystine-knot cytokines0.07505Inherited
Cyclin-like0.09736Inherited
Nucleic acid-binding proteins0.113Inherited
GroEL equatorial domain-like0.1155Inherited
GroEL-intermediate domain like0.1155Inherited
GroEL apical domain-like0.1155Inherited
HIT/MYND zinc finger-like0.188Inherited
Arginase/deacetylase0.188Inherited
Protein kinase-like (PK-like)0.2784Inherited
P-loop containing nucleoside triphosphate hydrolases0.3026Inherited
TPR-like0.3516Inherited
SNARE-like0.5124Inherited
Nucleotide-diphospho-sugar transferases0.5752Inherited
"Winged helix" DNA-binding domain0.5826Inherited
TSP-1 type 1 repeat0.6474Inherited
Intermediate filament protein, coiled coil region0.6474Inherited
Tubulin nucleotide-binding domain-like0.9243Inherited
Homeodomain-like0.9274Inherited
NAD(P)-binding Rossmann-fold domains0.9318Inherited
F-box domain0.9661Inherited
Tubulin C-terminal domain-like0.9955Inherited
RNA-binding domain, RBD1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PHD domain0.000009068Direct
Sema domain0.0000125Direct
Proteasome subunits0.00001532Direct
Plexin repeat0.00006695Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00006695Direct
Cullin repeat0.00006695Direct
SCF ubiquitin ligase complex WHB domain0.00006695Direct
Cdc48 domain 2-like0.0001354Direct
Cdc48 N-terminal domain-like0.0001354Direct
Cell cycle transcription factor e2f-dp0.0001354Direct
Cullin homology domain0.0002104Direct
Transforming growth factor (TGF)-beta0.0005974Direct
F1F0 ATP synthase subunit C0.0005974Direct
N-acetyl transferase, NAT0.0007468Direct
RecA protein-like (ATPase-domain)0.001602Inherited
Armadillo repeat0.004803Inherited
I set domains0.007252Inherited
Bromodomain0.007252Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.01235Inherited
HMG-box0.02093Inherited
Fibronectin type III0.02281Inherited
Cadherin0.02956Inherited
TBP-associated factors, TAFs0.02956Inherited
Histone lysine methyltransferases0.03547Inherited
Chromo domain0.03897Inherited
WD40-repeat0.04934Inherited
Pumilio repeat0.05962Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1669Inherited
Histone deacetylase, HDAC0.1669Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1669Inherited
Clathrin adaptor core protein0.1669Inherited
Protein kinases, catalytic subunit0.2504Inherited
PDZ domain0.4822Inherited
Intermediate filament protein, coiled coil region0.6201Inherited
Homeodomain0.8183Inherited
Tubulin, GTPase domain0.9079Inherited
Tubulin, C-terminal domain0.9838Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin alpha N-terminal domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat-like0.000027Direct
Plexin repeat0.00003018Direct
Sema domain0.00003018Direct
ADC-like0.00007203Direct
Integrin domains0.00007203Direct
E2F-DP heterodimerization region0.00007203Direct
Cdc48 domain 2-like0.00007203Direct
Cullin homology domain0.000096Direct
F1F0 ATP synthase subunit C0.0003217Direct
Immunoglobulin0.0005491Direct
Chromo domain-like0.0008363Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0008735Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001475Inherited
Sm-like ribonucleoproteins0.004593Inherited
Bromodomain0.007776Inherited
HMG-box0.02223Inherited
Fibronectin type III0.02429Inherited
FYVE/PHD zinc finger0.03533Inherited
Acyl-CoA N-acyltransferases (Nat)0.03574Inherited
Cadherin-like0.03728Inherited
SET domain0.03733Inherited
WD40 repeat-like0.045Inherited
EGF/Laminin0.05367Inherited
Cystine-knot cytokines0.0669Inherited
Cyclin-like0.0876Inherited
Nucleic acid-binding proteins0.1021Inherited
GroEL apical domain-like0.1044Inherited
GroEL-intermediate domain like0.1044Inherited
GroEL equatorial domain-like0.1044Inherited
Arginase/deacetylase0.1724Inherited
HIT/MYND zinc finger-like0.1724Inherited
vWA-like0.2593Inherited
Protein kinase-like (PK-like)0.2594Inherited
P-loop containing nucleoside triphosphate hydrolases0.283Inherited
TPR-like0.3307Inherited
PDZ domain-like0.4439Inherited
SNARE-like0.49Inherited
Nucleotide-diphospho-sugar transferases0.5529Inherited
"Winged helix" DNA-binding domain0.5604Inherited
TSP-1 type 1 repeat0.6256Inherited
Intermediate filament protein, coiled coil region0.6256Inherited
Tubulin nucleotide-binding domain-like0.9116Inherited
Homeodomain-like0.9149Inherited
NAD(P)-binding Rossmann-fold domains0.9196Inherited
F-box domain0.9554Inherited
Tubulin C-terminal domain-like0.9858Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00002091Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003018Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.00003018Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00007203Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00007203Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00007203Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.0003217Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.001857Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01236Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.07247Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0876Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0876Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1044Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1044Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.1044Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.9116Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003018Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.004593Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01236Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.02223Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0626Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1044Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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