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Worm Phenotype (WP): transgene subcellular localization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <5>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <10>(354|423) (357|200|60)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(343|412) (348|198|59)
+ + + + 4:   organism metabolism processing variant [WBPhenotype:0000027] <25>(167|178) (172|81|24)
+ + + 3:   gene expression variant [WBPhenotype:0000717] <10>(121|132) (128|62|19)
+ + 2:   transgene expression variant [WBPhenotype:0000306] <3>(83|93) (89|41|13)
+ 1:   pattern of transgene expression variant [WBPhenotype:0000961] <2>(47|56) (51|26|11)
0:   transgene subcellular localization variant [WBPhenotype:0000679](29|38) (32|20|8)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Helical domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
Zn-finger domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
HSP90 C-terminal domain0Direct
JAB1/MPN domain0Direct
Ribosomal protein L10-like0Direct
Clathrin adaptor appendage domain0Direct
Cu,Zn superoxide dismutase-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
UBC-like0.0000000000000184Direct
Tubulin C-terminal domain-like0.00000000000003078Direct
Tubulin nucleotide-binding domain-like0.0000000000002076Direct
HSP20-like chaperones0.000000000003195Direct
SNARE-like0.0000000007538Direct
Acid proteases0.00000000121Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000001892Direct
Cyclophilin-like0.0000000792Direct
B-box zinc-binding domain0.0000000792Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000001256Direct
Hect, E3 ligase catalytic domain0.0000001256Direct
RING/U-box0.0000001735Direct
FKBP-like0.0000259Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00003469Direct
Activating enzymes of the ubiquitin-like proteins0.00003561Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001339Direct
ENTH/VHS domain0.000858Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Clathrin coat assembly domain0Direct
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Quinoprotein alcohol dehydrogenase-like0Direct
14-3-3 protein0Direct
Hsp90 middle domain0Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PDI-like0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
HSP90 C-terminal domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Cu,Zn superoxide dismutase-like0Direct
Zn-finger domain of Sec23/240Direct
UBC-related0.000000000000003227Direct
Tubulin, C-terminal domain0.0000000000003962Direct
Tubulin, GTPase domain0.000000000002253Direct
Pepsin-like0.000000000005911Direct
RING finger domain, C3HC40.00000000001094Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000007432Direct
Hect, E3 ligase catalytic domain0.0000004174Direct
Cyclophilin (peptidylprolyl isomerase)0.0000004592Direct
B-box zinc-binding domain0.0000004592Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000002316Direct
HSP200.000002316Direct
Clathrin adaptor core protein0.00001281Direct
Extended PAW domain0.00001363Direct
FKBP immunophilin/proline isomerase0.00006928Direct
RecA protein-like (ATPase-domain)0.00007032Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00007032Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003039Direct
Ubiquitin activating enzymes (UBA)0.0003802Direct
Calmodulin-like0.000591Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cu,Zn superoxide dismutase-like0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
Ribosomal protein L10-like0Direct
JAB1/MPN domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
HSP90 C-terminal domain0Direct
UBC-like0.0000000000000143Direct
Tubulin C-terminal domain-like0.00000000000002394Direct
Tubulin nucleotide-binding domain-like0.0000000000001617Direct
HSP20-like chaperones0.000000000002498Direct
SNARE-like0.0000000005936Direct
Acid proteases0.0000000009539Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000000015Direct
B-box zinc-binding domain0.00000006298Direct
Cyclophilin-like0.00000006298Direct
Hect, E3 ligase catalytic domain0.0000001Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000001Direct
RING/U-box0.0000001383Direct
FKBP-like0.000021Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00002815Direct
Activating enzymes of the ubiquitin-like proteins0.00002892Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001092Direct
ENTH/VHS domain0.0007091Direct
Lipovitellin-phosvitin complex, superhelical domain0.0008859Direct
Sec1/munc18-like (SM) proteins0.0008859Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0.0008859Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54495,46934
  • 54495 - UBC-like
  • 46934 - UBA-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0000000000001617Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000001Direct
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.00003641Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0001092Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0003595Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0008859Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.0008859Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0.0008859Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000001Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0001092Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0001092Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.0008859Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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