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Worm Phenotype (WP): transgene subcellular localization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <2>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + + 4:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + + 3:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ + 2:   transgene expression variant [WBPhenotype:0000306] <3>(82|99) (85|43|14)
+ 1:   pattern of transgene expression variant [WBPhenotype:0000961] <2>(49|61) (49|29|12)
0:   transgene subcellular localization variant [WBPhenotype:0000679](30|44) (30|23|9)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
JAB1/MPN domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
FF domain0Direct
Cu,Zn superoxide dismutase-like0Direct
Clathrin adaptor appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
HSP90 C-terminal domain0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Ribosomal protein L10-like0Direct
Chromo domain-like8.972e-16Direct
Tubulin C-terminal domain-like0.0000000000001398Direct
UBC-like0.000000000000162Direct
Tubulin nucleotide-binding domain-like0.0000000000008598Direct
HSP20-like chaperones0.00000000001633Direct
Acid proteases0.000000002077Direct
SNARE-like0.000000002336Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000004537Direct
Cyclophilin-like0.0000002328Direct
Hect, E3 ligase catalytic domain0.0000002742Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000002742Direct
B-box zinc-binding domain0.0000006992Direct
RING/U-box0.000001538Direct
FKBP-like0.00004976Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005751Direct
Activating enzymes of the ubiquitin-like proteins0.00006363Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002342Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
HSP90 C-terminal domain0Direct
PDI-like0Direct
Cu,Zn superoxide dismutase-like0Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Anticodon-binding domain of Class II aaRS0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin coat assembly domain0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
FF domain0Direct
beta-sandwich domain of Sec23/240Direct
Chromo domain0Direct
Trunk domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Quinoprotein alcohol dehydrogenase-like0Direct
Zn-finger domain of Sec23/240Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Hsp90 middle domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
UBC-related0.00000000000001904Direct
Tubulin, C-terminal domain0.000000000001378Direct
Forkhead DNA-binding domain0.000000000007267Direct
Tubulin, GTPase domain0.000000000007267Direct
RING finger domain, C3HC40.00000000007266Direct
Pepsin-like0.0000000001009Direct
PHD domain0.00000000366Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0000001521Direct
Hect, E3 ligase catalytic domain0.0000007897Direct
Cyclophilin (peptidylprolyl isomerase)0.000001102Direct
B-box zinc-binding domain0.000003212Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000004069Direct
HSP200.000004069Direct
Extended PAW domain0.00001701Direct
Clathrin adaptor core protein0.00002084Direct
Armadillo repeat0.00009035Direct
RecA protein-like (ATPase-domain)0.000106Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000106Direct
FKBP immunophilin/proline isomerase0.0001175Direct
Nucleosome core histones0.0002746Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0004776Direct
Ubiquitin activating enzymes (UBA)0.0005312Direct
Adenain-like0.0005312Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ribosomal protein L10-like0Direct
Clathrin adaptor appendage domain0Direct
Cu,Zn superoxide dismutase-like0Direct
14-3-3 protein0Direct
HSP90 C-terminal domain0Direct
JAB1/MPN domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
FF domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Chromo domain-like7.031e-16Direct
Tubulin C-terminal domain-like0.0000000000001098Direct
UBC-like0.0000000000001273Direct
Tubulin nucleotide-binding domain-like0.000000000000677Direct
HSP20-like chaperones0.00000000001289Direct
Acid proteases0.000000001651Direct
SNARE-like0.000000001857Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0000000363Direct
Cyclophilin-like0.0000001871Direct
Hect, E3 ligase catalytic domain0.0000002204Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000002204Direct
B-box zinc-binding domain0.0000005643Direct
RING/U-box0.000001245Direct
FKBP-like0.0000407Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00004705Direct
Activating enzymes of the ubiquitin-like proteins0.00005206Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001926Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57903,82199
  • 57903 - FYVE/PHD zinc finger
  • 82199 - SET domain
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    81698,81698
  • 81698 - FF domain
  • 81698 - FF domain
  • 0Direct
    144232,82199
  • 144232 - HIT/MYND zinc finger-like
  • 82199 - SET domain
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    54495,46934
  • 54495 - UBC-like
  • 46934 - UBA-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    57903,51197
  • 57903 - FYVE/PHD zinc finger
  • 51197 - Clavaminate synthase-like
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.000000000000677Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000002204Direct
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.000174Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0001926Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.000665Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000002204Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0001926Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0001926Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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