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Worm Phenotype (WP): intestinal development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   development variant [WBPhenotype:0000518] <4>(511|586) (511|253|70)
+ + 2:   organ system development variant [WBPhenotype:0000530] <9>(78|71) (81|32|12)
+ 1:   alimentary system development variant [WBPhenotype:0000617] <6>(12|10) (12|5|3)
0:   intestinal development variant [WBPhenotype:0000708] <4>(10|9) (10|5|3)
- 1:   intestinal cell development variant [WBPhenotype:0000705] <3>(4|3) (4|2|2)
- 1:   excess intestinal cells [WBPhenotype:0001636](2|3) (2|1|0)
- 1:   gut obstructed [WBPhenotype:0001630](0|0) (0|0|0)
- 1:   no Intestine [WBPhenotype:0001637](2|2) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.00000000000003269Direct
RNA-binding domain, RBD0.000000000002316Direct
CCCH zinc finger0.00005129Direct
WD40 repeat-like0.0002162Direct
ABC transporter transmembrane region0.0003657Direct
SNARE-like0.0004588Direct
Bromodomain0.0006072Direct
BAR/IMD domain-like0.005604Inherited
Protein kinase-like (PK-like)0.007635Inherited
FYVE/PHD zinc finger0.4621Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000000008058Direct
Canonical RBD0.00000000001451Direct
Clathrin coat assembly domain0.00003329Direct
CCCH zinc finger0.0001184Direct
ABC transporter transmembrane region0.0004419Direct
WD40-repeat0.0009851Direct
Bromodomain0.0009903Direct
Protein kinases, catalytic subunit0.03459Inherited
ABC transporter ATPase domain-like0.2486Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.00000000000002556Direct
RNA-binding domain, RBD0.00000000000182Direct
CCCH zinc finger0.00004176Direct
WD40 repeat-like0.0001768Direct
ABC transporter transmembrane region0.0003003Direct
SNARE-like0.0003777Direct
Bromodomain0.0005008Direct
BAR/IMD domain-like0.00475Inherited
Protein kinase-like (PK-like)0.0065Inherited
FYVE/PHD zinc finger0.4392Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.00004959Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00005524Direct
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0003003Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0006505Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.002642Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005524Direct
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00005524Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0005008Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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