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Worm Phenotype (WP): apoptosis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <5>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <6>(490|567) (491|248|69)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <27>(143|144) (143|64|18)
+ + 2:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
+ 1:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
0:   apoptosis variant [WBPhenotype:0000730] <13>(50|44) (50|13|5)
- 1:   engulfment variant [WBPhenotype:0000885] <4>(1|1) (1|0|0)
- 1:   apoptosis increased [WBPhenotype:0000183] <2>(7|8) (7|3|1)
- 1:   apoptosis reduced [WBPhenotype:0000182] <2>(3|4) (3|0|0)
- 1:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
- 1:   cell death sexually dimorphic variant [WBPhenotype:0001218] <2>(0|0) (0|0|0)
- 1:   mutagen induced apoptosis variant [WBPhenotype:0002152] <2>(3|1) (3|0|0)
- 1:   apoptosis protracted [WBPhenotype:0000185] <1>(2|2) (2|0|0)
- 1:   apoptotic DNA degradation defective [WBPhenotype:0002201](0|0) (0|0|0)
- 1:   apoptotic arrest [WBPhenotype:0000244](0|0) (0|0|0)
- 1:   apoptotic cell shedding variant [WBPhenotype:0002180](0|0) (0|0|0)
- 1:   cell corpse degradation variant [WBPhenotype:0010004](2|2) (2|0|0)
- 1:   corpse morphology variant [WBPhenotype:0002203](0|0) (0|0|0)
- 1:   starvation induced apoptosis variant [WBPhenotype:0002184](1|1) (1|1|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Clathrin adaptor appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
DLC0Direct
PX domain0Direct
VPS9 domain0Direct
RBP11-like subunits of RNA polymerase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0.00000000000001863Direct
Cullin homology domain0.00000003044Direct
GroEL apical domain-like0.0000000833Direct
PH domain-like0.0000001334Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000004207Direct
GroEL-intermediate domain like0.0000009198Direct
GroEL equatorial domain-like0.0000009198Direct
Cullin repeat-like0.0000009198Direct
ENTH/VHS domain0.000004029Direct
Histone-fold0.000006427Direct
SH3-domain0.0000391Direct
Nucleic acid-binding proteins0.0000391Direct
Sm-like ribonucleoproteins0.00004288Direct
Integrin domains0.00007643Direct
5' to 3' exonuclease, C-terminal subdomain0.00007643Direct
"Winged helix" DNA-binding domain0.00008972Direct
BAR/IMD domain-like0.0001303Direct
Activating enzymes of the ubiquitin-like proteins0.0002392Direct
Cupredoxins0.0003397Direct
Tubby C-terminal domain-like0.0003397Direct
DEATH domain0.0004904Direct
SNARE-like0.0006269Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0009171Direct
Sec1/munc18-like (SM) proteins0.0009171Direct
Metal cation-transporting ATPase, ATP-binding domain N0.001123Inherited
Lamin A/C globular tail domain0.001509Inherited
Calcium ATPase, transmembrane domain M0.00152Inherited
HLH, helix-loop-helix DNA-binding domain0.002714Inherited
PIN domain-like0.003517Inherited
Calcium ATPase, transduction domain A0.004966Inherited
Hect, E3 ligase catalytic domain0.005775Inherited
Intermediate filament protein, coiled coil region0.01267Inherited
Chromo domain-like0.0793Inherited
POZ domain0.1008Inherited
Saposin0.168Inherited
ARM repeat0.1746Inherited
RNA-binding domain, RBD0.2129Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.5723Inherited
SET domain0.7908Inherited
Metallo-dependent phosphatases0.861Inherited
FYVE/PHD zinc finger0.8629Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Arginine methyltransferase0Direct
RNA-polymerase beta0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Myotubularin-like phosphatases0Direct
PX domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain3.148e-16Direct
Skp1 dimerisation domain-like0.00000000000007696Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000006237Direct
Cullin homology domain0.00000008762Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000006357Direct
RecA protein-like (ATPase-domain)0.0000009997Direct
G proteins0.00001933Direct
Nucleosome core histones0.00002529Direct
BTB/POZ domain0.0000443Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.0000616Direct
Ephrin ectodomain0.0001243Direct
5' to 3' exonuclease, C-terminal subdomain0.0001243Direct
5' to 3' exonuclease catalytic domain0.0001243Direct
Cold shock DNA-binding domain-like0.0001501Direct
Clathrin adaptor core protein0.0001896Direct
SH3-domain0.000273Direct
BAR domain0.0005499Direct
Ubiquitin activating enzymes (UBA)0.0005499Direct
Phosphotyrosine-binding domain (PTB)0.0008542Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0008542Direct
Sec1/munc18-like (SM) proteins0.001477Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001477Inherited
Armadillo repeat0.004387Inherited
Translational machinery components0.005649Inherited
HLH, helix-loop-helix DNA-binding domain0.007869Inherited
Proteasome subunits0.009208Inherited
Hect, E3 ligase catalytic domain0.009225Inherited
Calcium ATPase, transduction domain A0.0102Inherited
Intermediate filament protein, coiled coil region0.02009Inherited
Canonical RBD0.2987Inherited
Histone lysine methyltransferases0.8318Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
Clathrin adaptor appendage domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
PX domain0Direct
VPS9 domain0Direct
Skp1 dimerisation domain-like0.00000000000001452Direct
Cullin homology domain0.0000000242Direct
GroEL apical domain-like0.00000006641Direct
PH domain-like0.0000001064Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000003369Direct
GroEL equatorial domain-like0.0000007389Direct
Cullin repeat-like0.0000007389Direct
GroEL-intermediate domain like0.0000007389Direct
ENTH/VHS domain0.000003251Direct
Histone-fold0.000005195Direct
SH3-domain0.00003176Direct
Nucleic acid-binding proteins0.00003176Direct
Sm-like ribonucleoproteins0.00003484Direct
Integrin domains0.00006221Direct
5' to 3' exonuclease, C-terminal subdomain0.00006221Direct
"Winged helix" DNA-binding domain0.00007311Direct
BAR/IMD domain-like0.0001063Direct
Activating enzymes of the ubiquitin-like proteins0.0001956Direct
Cupredoxins0.0002786Direct
Tubby C-terminal domain-like0.0002786Direct
DEATH domain0.0004036Direct
SNARE-like0.000517Direct
Sec1/munc18-like (SM) proteins0.0007588Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0007588Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0009305Direct
Lamin A/C globular tail domain0.001254Inherited
Calcium ATPase, transmembrane domain M0.001264Inherited
HLH, helix-loop-helix DNA-binding domain0.002278Inherited
PIN domain-like0.002959Inherited
Calcium ATPase, transduction domain A0.004198Inherited
Hect, E3 ligase catalytic domain0.004894Inherited
Intermediate filament protein, coiled coil region0.01087Inherited
Chromo domain-like0.07077Inherited
POZ domain0.0906Inherited
Saposin0.1535Inherited
ARM repeat0.1597Inherited
RNA-binding domain, RBD0.1961Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.5497Inherited
SET domain0.7728Inherited
Metallo-dependent phosphatases0.8461Inherited
FYVE/PHD zinc finger0.8481Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000000428Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000007389Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000007389Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.0002786Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0009305Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.006862Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.008707Inherited
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0262Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000007389Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000669Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.01087Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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