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Worm Phenotype (WP): apoptosis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <5>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <26>(152|155) (154|66|17)
+ + + 3:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|155) (154|66|17)
+ + 2:   cell death variant [WBPhenotype:0000729] <3>(58|51) (59|17|5)
+ 1:   programmed cell death variant [WBPhenotype:0001172] <4>(56|48) (57|16|5)
0:   apoptosis variant [WBPhenotype:0000730] <13>(51|44) (51|13|5)
- 1:   engulfment variant [WBPhenotype:0000885] <4>(1|1) (1|0|0)
- 1:   apoptosis increased [WBPhenotype:0000183] <2>(7|8) (7|3|1)
- 1:   apoptosis reduced [WBPhenotype:0000182] <2>(3|4) (3|0|0)
- 1:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
- 1:   cell death sexually dimorphic variant [WBPhenotype:0001218] <2>(0|0) (0|0|0)
- 1:   mutagen induced apoptosis variant [WBPhenotype:0002152] <2>(4|1) (4|0|0)
- 1:   apoptosis protracted [WBPhenotype:0000185] <1>(2|2) (2|0|0)
- 1:   apoptotic DNA degradation defective [WBPhenotype:0002201](0|0) (0|0|0)
- 1:   apoptotic arrest [WBPhenotype:0000244](0|0) (0|0|0)
- 1:   apoptotic cell shedding variant [WBPhenotype:0002180](0|0) (0|0|0)
- 1:   cell corpse degradation variant [WBPhenotype:0010004](2|2) (2|0|0)
- 1:   corpse morphology variant [WBPhenotype:0002203](0|0) (0|0|0)
- 1:   starvation induced apoptosis variant [WBPhenotype:0002184](1|1) (1|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Subdomain of clathrin and coatomer appendage domain0Direct
DLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
VPS9 domain0Direct
Clathrin adaptor appendage domain0Direct
PX domain0Direct
RBP11-like subunits of RNA polymerase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0.00000000000001886Direct
Cullin homology domain0.00000003092Direct
GroEL apical domain-like0.00000008445Direct
PH domain-like0.0000001576Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000000428Direct
Cullin repeat-like0.0000009339Direct
GroEL-intermediate domain like0.0000009339Direct
GroEL equatorial domain-like0.0000009339Direct
ENTH/VHS domain0.000004081Direct
Histone-fold0.000006388Direct
Nucleic acid-binding proteins0.00003894Direct
SH3-domain0.00003894Direct
Sm-like ribonucleoproteins0.00004322Direct
Integrin domains0.00007767Direct
5' to 3' exonuclease, C-terminal subdomain0.00007767Direct
BAR/IMD domain-like0.0001824Direct
Activating enzymes of the ubiquitin-like proteins0.0002423Direct
Cupredoxins0.0003448Direct
Tubby C-terminal domain-like0.0003448Direct
DEATH domain0.0004963Direct
SNARE-like0.0006324Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0009278Direct
Sec1/munc18-like (SM) proteins0.0009278Direct
Metal cation-transporting ATPase, ATP-binding domain N0.001128Inherited
Lamin A/C globular tail domain0.001518Inherited
Calcium ATPase, transmembrane domain M0.001526Inherited
PIN domain-like0.00354Inherited
Calcium ATPase, transduction domain A0.004978Inherited
Hect, E3 ligase catalytic domain0.005803Inherited
Intermediate filament protein, coiled coil region0.01268Inherited
Chromo domain-like0.09077Inherited
POZ domain0.09428Inherited
ARM repeat0.1206Inherited
Saposin0.1653Inherited
RNA-binding domain, RBD0.2083Inherited
"Winged helix" DNA-binding domain0.3745Inherited
PLP-dependent transferases0.4647Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.4914Inherited
HLH, helix-loop-helix DNA-binding domain0.6904Inherited
SET domain0.7283Inherited
FYVE/PHD zinc finger0.7841Inherited
Metallo-dependent phosphatases0.8542Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cullin repeat0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
PX domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
RNA-polymerase beta0Direct
Arginine methyltransferase0Direct
Myotubularin-like phosphatases0Direct
DLC0Direct
SCF ubiquitin ligase complex WHB domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain3.234e-16Direct
Skp1 dimerisation domain-like0.00000000000007713Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000006329Direct
Cullin homology domain0.00000008903Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000006447Direct
RecA protein-like (ATPase-domain)0.000001015Direct
Nucleosome core histones0.00002539Direct
BTB/POZ domain0.00004454Direct
G proteins0.00005401Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.00006256Direct
5' to 3' exonuclease, C-terminal subdomain0.0001264Direct
5' to 3' exonuclease catalytic domain0.0001264Direct
Ephrin ectodomain0.0001264Direct
Cold shock DNA-binding domain-like0.0001519Direct
Clathrin adaptor core protein0.0001927Direct
SH3-domain0.0002745Direct
BAR domain0.0005585Direct
Ubiquitin activating enzymes (UBA)0.0005585Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0008627Direct
Phosphotyrosine-binding domain (PTB)0.0008627Direct
Sec1/munc18-like (SM) proteins0.001494Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001494Inherited
Armadillo repeat0.004409Inherited
Translational machinery components0.005684Inherited
Proteasome subunits0.009225Inherited
Hect, E3 ligase catalytic domain0.009251Inherited
Calcium ATPase, transduction domain A0.01022Inherited
Intermediate filament protein, coiled coil region0.02005Inherited
Canonical RBD0.2952Inherited
HLH, helix-loop-helix DNA-binding domain0.6513Inherited
Histone lysine methyltransferases0.7799Inherited
Protein kinases, catalytic subunit1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RBP11-like subunits of RNA polymerase0Direct
PX domain0Direct
DLC0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
VPS9 domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0.00000000000001466Direct
Cullin homology domain0.00000002453Direct
GroEL apical domain-like0.00000006718Direct
PH domain-like0.0000001255Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000003421Direct
GroEL equatorial domain-like0.0000007491Direct
GroEL-intermediate domain like0.0000007491Direct
Cullin repeat-like0.0000007491Direct
ENTH/VHS domain0.00000329Direct
Histone-fold0.000005155Direct
Nucleic acid-binding proteins0.00003164Direct
SH3-domain0.00003164Direct
Sm-like ribonucleoproteins0.00003514Direct
Integrin domains0.00006321Direct
5' to 3' exonuclease, C-terminal subdomain0.00006321Direct
BAR/IMD domain-like0.000149Direct
Activating enzymes of the ubiquitin-like proteins0.0001982Direct
Cupredoxins0.0002826Direct
Tubby C-terminal domain-like0.0002826Direct
DEATH domain0.0004081Direct
SNARE-like0.0005207Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0007671Direct
Sec1/munc18-like (SM) proteins0.0007671Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0009333Direct
Lamin A/C globular tail domain0.001261Inherited
Calcium ATPase, transmembrane domain M0.001268Inherited
PIN domain-like0.002979Inherited
Calcium ATPase, transduction domain A0.004205Inherited
Hect, E3 ligase catalytic domain0.004907Inherited
Intermediate filament protein, coiled coil region0.01087Inherited
Chromo domain-like0.08147Inherited
POZ domain0.08474Inherited
ARM repeat0.1092Inherited
Saposin0.1511Inherited
RNA-binding domain, RBD0.1917Inherited
"Winged helix" DNA-binding domain0.3536Inherited
PLP-dependent transferases0.4428Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.4698Inherited
HLH, helix-loop-helix DNA-binding domain0.6691Inherited
SET domain0.7084Inherited
FYVE/PHD zinc finger0.7659Inherited
Metallo-dependent phosphatases0.8381Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.00000000000004284Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000007491Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000007491Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.0002826Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0009333Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.008695Inherited
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.02608Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7501Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000007491Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.0006725Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.01087Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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