SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): spindle defective early emb

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|64)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|69)
+ + + + 4:   organelle organization biogenesis variant [WBPhenotype:0001344] <10>(30|29) (31|10|1)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|54|17)
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + + 3:   cytoskeleton organization biogenesis variant [WBPhenotype:0001345] <2>(14|14) (14|5|0)
+ + + 3:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ + + 3:   organism development variant [WBPhenotype:0000531] <10>(505|583) (505|248|69)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   lethal [WBPhenotype:0000062] <5>(497|580) (497|247|69)
+ + 2:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
+ + 2:   embryonic cell physiology variant [WBPhenotype:0000763] <1>(12|17) (13|6|0)
+ + 2:   embryonic lethal [WBPhenotype:0000050] <7>(433|528) (433|227|64)
+ + 2:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + 2:   microtubule organization biogenesis variant [WBPhenotype:0001588] <4>(9|11) (9|5|0)
+ + 2:   embryonic development variant [WBPhenotype:0000749] <21>(437|529) (437|228|64)
+ 1:   early embryonic lethal [WBPhenotype:0001100] <24>(40|39) (40|12|3)
+ 1:   spindle variant [WBPhenotype:0002414] <8>(7|11) (7|4|0)
+ 1:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(12|17) (13|6|0)
0:   spindle defective early emb [WBPhenotype:0000759] <2>(7|11) (7|4|0)
- 1:   mitotic spindle defective early emb [WBPhenotype:0001102] <6>(7|9) (7|3|0)
- 1:   meiotic spindle defective early emb [WBPhenotype:0001343](0|1) (0|1|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
POZ domain0.0000001446Direct
Tubulin nucleotide-binding domain-like0.005686Inherited
TPR-like0.01175Inherited
Tubulin C-terminal domain-like0.01595Inherited
Prefoldin0.0457Inherited
"Winged helix" DNA-binding domain0.05329Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.000000006146Direct
DEP domain0.000003702Direct
Motor proteins0.00001062Direct
PDZ domain0.0002014Direct
Tubulin, GTPase domain0.003891Inherited
Armadillo repeat0.00406Inherited
Tubulin, C-terminal domain0.01133Inherited
Prefoldin0.03502Inherited
G proteins0.09797Inherited
Extended AAA-ATPase domain0.2048Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
POZ domain0.0000001159Direct
Tubulin nucleotide-binding domain-like0.004837Inherited
TPR-like0.01013Inherited
Tubulin C-terminal domain-like0.01382Inherited
Prefoldin0.0404Inherited
"Winged helix" DNA-binding domain0.0473Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.004837Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.01421Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0359Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)