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Worm Phenotype (WP): embryonic cell organization biogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + 3:   development variant [WBPhenotype:0000518] <7>(511|586) (511|253|70)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|155) (154|66|17)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|155) (154|66|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <20>(84|88) (84|43|9)
+ + 2:   organism development variant [WBPhenotype:0000531] <10>(505|584) (505|253|70)
+ 1:   embryonic development variant [WBPhenotype:0000749] <23>(464|553) (464|243|67)
+ 1:   embryonic cell physiology variant [WBPhenotype:0000763] <1>(13|17) (13|7|0)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|43) (40|19|4)
0:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(13|17) (13|7|0)
- 1:   pronuclear nuclear appearance variant emb [WBPhenotype:0001374] <6>(6|8) (6|4|0)
- 1:   spindle defective early emb [WBPhenotype:0000759] <2>(7|11) (7|5|0)
- 1:   centrosome dynamics variant [WBPhenotype:0002074](0|0) (0|0|0)
- 1:   centrosome pair and associated pronuclear rotation variant [WBPhenotype:0000766](0|0) (0|0|0)
- 1:   cortical blebs present [WBPhenotype:0002007](0|0) (0|0|0)
- 1:   cortical dynamics defective early emb [WBPhenotype:0001044](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.00000000000001335Direct
Tubulin C-terminal domain-like0.000000002463Direct
ARM repeat0.000000003404Direct
Tubulin nucleotide-binding domain-like0.00000004027Direct
Prefoldin0.0000001025Direct
POZ domain0.00002629Direct
WD40 repeat-like0.0002453Direct
Nucleic acid-binding proteins0.0003176Direct
TPR-like0.0003788Direct
Cyclin-like0.0006278Direct
"Winged helix" DNA-binding domain0.0007802Direct
DNA/RNA polymerases0.002185Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.0000000007285Direct
Armadillo repeat0.000000006324Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000000009672Direct
Tubulin, C-terminal domain0.00000001042Direct
Motor proteins0.00000003503Direct
Prefoldin0.00000006459Direct
Tubulin, GTPase domain0.0000001395Direct
Extended AAA-ATPase domain0.00000105Direct
DEP domain0.00002774Direct
Pumilio repeat0.0000823Direct
Cyclin0.0001039Direct
G proteins0.000171Direct
DNA polymerase I0.0001736Direct
DnaQ-like 3'-5' exonuclease0.0006176Direct
WD40-repeat0.0006321Direct
PDZ domain0.002362Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.00000000000001037Direct
Tubulin C-terminal domain-like0.000000001945Direct
ARM repeat0.000000002691Direct
Tubulin nucleotide-binding domain-like0.00000003198Direct
Prefoldin0.00000008159Direct
POZ domain0.00002132Direct
WD40 repeat-like0.0002006Direct
Nucleic acid-binding proteins0.0002603Direct
TPR-like0.0003106Direct
Cyclin-like0.0005169Direct
"Winged helix" DNA-binding domain0.0006443Direct
DNA/RNA polymerases0.001824Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00000003198Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000006927Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.00003905Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.001565Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.003058Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.05283Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)