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Worm Phenotype (WP): gametogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <7>(511|586) (511|253|70)
+ 1:   cell development variant [WBPhenotype:0000529] <16>(125|123) (125|48|16)
0:   gametogenesis variant [WBPhenotype:0000774] <2>(64|59) (64|26|6)
- 1:   germ cell development variant [WBPhenotype:0000812] <8>(62|59) (62|26|6)
- 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(35|39) (35|15|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
Ribosomal protein L10Direct
Smc hinge domain0Direct
Ribosomal protein L10-like0Direct
The spindle assembly checkpoint protein mad20Direct
LEM domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000001424Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000007577Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001444Direct
Histone-fold0.0002544Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.000408Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000408Direct
beta-sandwich domain of Sec23/240.0005056Direct
ADC-like0.0005056Direct
Cdc48 domain 2-like0.0005056Direct
RBP11-like subunits of RNA polymerase0.0005056Direct
DNA repair protein MutS, domain III0.0005056Direct
Nucleic acid-binding proteins0.0006429Direct
Sm-like ribonucleoproteins0.0008642Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0008849Direct
F1F0 ATP synthase subunit C0.002119Inherited
S15/NS1 RNA-binding domain0.002119Inherited
Ribosomal proteins S24e, L23 and L15e0.002119Inherited
POZ domain0.003664Inherited
Translational machinery components0.005395Inherited
Sec1/munc18-like (SM) proteins0.005395Inherited
Ribosomal protein S5 domain 2-like0.006723Inherited
Skp1 dimerisation domain-like0.00844Inherited
Quinoprotein alcohol dehydrogenase-like0.008922Inherited
P-loop containing nucleoside triphosphate hydrolases0.01326Inherited
Translation proteins0.0159Inherited
Retrovirus zinc finger-like domains0.02805Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02922Inherited
PAZ domain0.02951Inherited
"Winged helix" DNA-binding domain0.03368Inherited
HMG-box0.04009Inherited
Class II aaRS and biotin synthetases0.04459Inherited
Class II aaRS ABD-related0.0493Inherited
L30e-like0.0493Inherited
WD40 repeat-like0.05545Inherited
Cullin homology domain0.08597Inherited
FKBP-like0.08597Inherited
TPR-like0.09651Inherited
Translation proteins SH3-like domain0.1021Inherited
SET domain0.22Inherited
Activating enzymes of the ubiquitin-like proteins0.2436Inherited
ARM repeat0.3402Inherited
Nucleotidylyl transferase0.3474Inherited
SMAD MH1 domain0.3604Inherited
CCCH zinc finger0.4036Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4732Inherited
SNARE-like0.4732Inherited
RNA-binding domain, RBD0.4819Inherited
EGF/Laminin0.6824Inherited
Cysteine-rich domain0.7592Inherited
Protein kinase-like (PK-like)1Inherited
F-box domain1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
POU-specific domain0Direct
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Ribosomal protein L10Direct
Helical domain of Sec23/240Direct
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0Direct
Smc hinge domain0Direct
RNA-polymerase beta0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
LEM domain0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000003314Direct
RecA protein-like (ATPase-domain)0.00001329Direct
Nucleosome core histones0.000355Direct
Cdc48 N-terminal domain-like0.0006815Direct
Cdc48 domain 2-like0.0006815Direct
DNA repair protein MutS, domain III0.0006815Direct
Anticodon-binding domain0.0006815Direct
DNA gyrase/MutL, N-terminal domain0.0006815Direct
Extended AAA-ATPase domain0.0007882Direct
BTB/POZ domain0.0008932Direct
F1F0 ATP synthase subunit C0.002852Inherited
Translational machinery components0.003304Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.004Inherited
Skp1 dimerisation domain-like0.006795Inherited
Cyclin0.007231Inherited
Pumilio repeat0.01305Inherited
Cold shock DNA-binding domain-like0.01368Inherited
WD40-repeat0.02045Inherited
Retrovirus zinc finger-like domains0.0234Inherited
HMG-box0.03385Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.03774Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0393Inherited
Elongation factors0.04217Inherited
Ubiquitin-related0.06286Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.07444Inherited
FKBP immunophilin/proline isomerase0.07444Inherited
L30e/L7ae ribosomal proteins0.07444Inherited
Actin/HSP700.08478Inherited
Nitrogenase iron protein-like0.1315Inherited
RNA editing terminal uridyl transferase 2, RET2, domain 20.1315Inherited
Anticodon-binding domain of Class II aaRS0.1315Inherited
Clathrin adaptor core protein0.1315Inherited
SMAD domain0.221Inherited
Canonical RBD0.3086Inherited
Motor proteins0.331Inherited
SMAD MH1 domain0.335Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.3783Inherited
CCCH zinc finger0.3783Inherited
Histone lysine methyltransferases0.3998Inherited
Tetratricopeptide repeat (TPR)0.4102Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.5708Inherited
G proteins0.8466Inherited
Protein kinases, catalytic subunit0.9105Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
Ribosomal protein L10Direct
Zn-finger domain of Sec23/240Direct
LEM domain0Direct
Helical domain of Sec23/240Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
Smc hinge domain0Direct
Ribosomal protein L10-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL apical domain-like0.000000001123Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000006115Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001179Direct
Histone-fold0.0002082Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003349Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0003349Direct
DNA repair protein MutS, domain III0.0004159Direct
RBP11-like subunits of RNA polymerase0.0004159Direct
Cdc48 domain 2-like0.0004159Direct
ADC-like0.0004159Direct
beta-sandwich domain of Sec23/240.0004159Direct
Nucleic acid-binding proteins0.0005297Direct
Sm-like ribonucleoproteins0.0007141Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0007313Direct
S15/NS1 RNA-binding domain0.001768Inherited
Ribosomal proteins S24e, L23 and L15e0.001768Inherited
F1F0 ATP synthase subunit C0.001768Inherited
POZ domain0.003083Inherited
Sec1/munc18-like (SM) proteins0.004559Inherited
Translational machinery components0.004559Inherited
Ribosomal protein S5 domain 2-like0.005698Inherited
Skp1 dimerisation domain-like0.007183Inherited
Quinoprotein alcohol dehydrogenase-like0.007601Inherited
P-loop containing nucleoside triphosphate hydrolases0.01138Inherited
Translation proteins0.01369Inherited
Retrovirus zinc finger-like domains0.02447Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02551Inherited
PAZ domain0.02577Inherited
"Winged helix" DNA-binding domain0.02949Inherited
HMG-box0.0352Inherited
Class II aaRS and biotin synthetases0.03924Inherited
Class II aaRS ABD-related0.04351Inherited
L30e-like0.04351Inherited
WD40 repeat-like0.04908Inherited
Cullin homology domain0.07704Inherited
FKBP-like0.07704Inherited
TPR-like0.08683Inherited
Translation proteins SH3-like domain0.09205Inherited
SET domain0.2029Inherited
Activating enzymes of the ubiquitin-like proteins0.2257Inherited
ARM repeat0.3199Inherited
Nucleotidylyl transferase0.3271Inherited
SMAD MH1 domain0.3398Inherited
CCCH zinc finger0.3823Inherited
SNARE-like0.4513Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4513Inherited
RNA-binding domain, RBD0.4602Inherited
EGF/Laminin0.661Inherited
Cysteine-rich domain0.7402Inherited
F-box domain1Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001286Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003349Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0004159Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0004159Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0004159Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001768Inherited
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0.001768Inherited
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.01117Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01756Inherited
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.02447Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02551Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.07704Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.07704Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1147Inherited
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.1353Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1454Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2521Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.4044Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7604Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001286Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003349Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02551Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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