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Worm Phenotype (WP): gametogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <4>(506|581) (506|253|70)
+ 1:   cell development variant [WBPhenotype:0000529] <16>(117|119) (118|47|13)
0:   gametogenesis variant [WBPhenotype:0000774] <2>(56|54) (57|22|5)
- 1:   germ cell development variant [WBPhenotype:0000812] <6>(45|42) (46|17|5)
- 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10-like0Direct
14-3-3 protein0Direct
Smc hinge domain0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
GroEL apical domain-like0.0000000008059Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000005355Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00008192Direct
Histone-fold0.000111Direct
Nucleic acid-binding proteins0.0001889Direct
Cdc48 domain 2-like0.0004026Direct
ADC-like0.0004026Direct
beta-sandwich domain of Sec23/240.0004026Direct
RBP11-like subunits of RNA polymerase0.0004026Direct
Sm-like ribonucleoproteins0.0005483Direct
POZ domain0.000828Direct
Ribosomal proteins S24e, L23 and L15e0.001706Inherited
F1F0 ATP synthase subunit C0.001706Inherited
S15/NS1 RNA-binding domain0.001706Inherited
Sec1/munc18-like (SM) proteins0.004395Inherited
Translational machinery components0.004395Inherited
P-loop containing nucleoside triphosphate hydrolases0.004827Inherited
Skp1 dimerisation domain-like0.005268Inherited
Translation proteins0.01218Inherited
WD40 repeat-like0.02021Inherited
PAZ domain0.02215Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0245Inherited
TPR-like0.03274Inherited
Ribosomal protein S5 domain 2-like0.03781Inherited
"Winged helix" DNA-binding domain0.05915Inherited
L30e-like0.07413Inherited
Class II aaRS ABD-related0.07413Inherited
Class II aaRS and biotin synthetases0.08256Inherited
Translation proteins SH3-like domain0.08514Inherited
ARM repeat0.09103Inherited
HMG-box0.1263Inherited
SET domain0.1895Inherited
Activating enzymes of the ubiquitin-like proteins0.2172Inherited
Cullin homology domain0.3319Inherited
SMAD MH1 domain0.3319Inherited
CCCH zinc finger0.3561Inherited
Nucleotidylyl transferase0.3855Inherited
RNA-binding domain, RBD0.4116Inherited
SNARE-like0.4323Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.56Inherited
EGF/Laminin0.6025Inherited
Cysteine-rich domain0.714Inherited
Protein kinase-like (PK-like)1Inherited
F-box domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Trunk domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
POU-specific domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
RNA-polymerase beta0Direct
Proteasome subunits0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Smc hinge domain0Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000001918Direct
RecA protein-like (ATPase-domain)0.000009229Direct
Nucleosome core histones0.0001504Direct
Extended AAA-ATPase domain0.0002297Direct
BTB/POZ domain0.0003904Direct
Cdc48 domain 2-like0.0005338Direct
Anticodon-binding domain0.0005338Direct
Cdc48 N-terminal domain-like0.0005338Direct
Single strand DNA-binding domain, SSB0.001075Inherited
F1F0 ATP synthase subunit C0.002273Inherited
Translational machinery components0.002523Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.002693Inherited
Skp1 dimerisation domain-like0.003934Inherited
Cold shock DNA-binding domain-like0.005084Inherited
Cyclin0.005084Inherited
Pumilio repeat0.005084Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.03262Inherited
Elongation factors0.03296Inherited
Ubiquitin-related0.04726Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.06199Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.06872Inherited
Actin/HSP700.09447Inherited
HMG-box0.1075Inherited
Anticodon-binding domain of Class II aaRS0.1143Inherited
Nitrogenase iron protein-like0.1143Inherited
Clathrin adaptor core protein0.1143Inherited
L30e/L7ae ribosomal proteins0.1143Inherited
RNA editing terminal uridyl transferase 2, RET2, domain 20.1143Inherited
SMAD domain0.1915Inherited
Canonical RBD0.2421Inherited
Motor proteins0.2619Inherited
Cullin homology domain0.3005Inherited
SMAD MH1 domain0.3005Inherited
CCCH zinc finger0.3223Inherited
Histone lysine methyltransferases0.3577Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.4259Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.6712Inherited
G proteins0.7779Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10-like0Direct
GroEL equatorial domain-like0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
Smc hinge domain0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
LEM domain0Direct
GroEL apical domain-like0.0000000006364Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000004326Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006671Direct
Histone-fold0.00009051Direct
Nucleic acid-binding proteins0.0001543Direct
beta-sandwich domain of Sec23/240.0003307Direct
RBP11-like subunits of RNA polymerase0.0003307Direct
Cdc48 domain 2-like0.0003307Direct
ADC-like0.0003307Direct
Sm-like ribonucleoproteins0.0004514Direct
POZ domain0.0006841Direct
Ribosomal proteins S24e, L23 and L15e0.001421Inherited
F1F0 ATP synthase subunit C0.001421Inherited
S15/NS1 RNA-binding domain0.001421Inherited
Sec1/munc18-like (SM) proteins0.003712Inherited
Translational machinery components0.003712Inherited
P-loop containing nucleoside triphosphate hydrolases0.004081Inherited
Skp1 dimerisation domain-like0.004459Inherited
Translation proteins0.01045Inherited
WD40 repeat-like0.01752Inherited
PAZ domain0.01923Inherited
PAP/OAS1 substrate-binding domain0.01941Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02133Inherited
TPR-like0.02863Inherited
Ribosomal protein S5 domain 2-like0.03315Inherited
"Winged helix" DNA-binding domain0.05239Inherited
Class II aaRS ABD-related0.06601Inherited
L30e-like0.06601Inherited
Class II aaRS and biotin synthetases0.07374Inherited
Translation proteins SH3-like domain0.07615Inherited
ARM repeat0.08158Inherited
HMG-box0.1144Inherited
SET domain0.1737Inherited
Activating enzymes of the ubiquitin-like proteins0.2001Inherited
Cullin homology domain0.3112Inherited
SMAD MH1 domain0.3112Inherited
CCCH zinc finger0.335Inherited
Nucleotidylyl transferase0.3638Inherited
RNA-binding domain, RBD0.3894Inherited
SNARE-like0.4099Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.5372Inherited
EGF/Laminin0.58Inherited
Cysteine-rich domain0.6936Inherited
F-box domain1Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0003307Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0003307Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.001417Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001421Inherited
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.007203Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01369Inherited
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.01941Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02133Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.06601Inherited
    55753,55753
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 0.1203Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.1203Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1247Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2784Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.3696Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7037Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.001417Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02133Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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