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Worm Phenotype (WP): gametogenesis variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + 2:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|69)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
0:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
- 1:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
- 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Smc hinge domain0Direct
Zn-finger domain of Sec23/240Direct
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
Ribosomal protein L10-like0Direct
GroEL apical domain-like0.0000000008648Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000005574Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006349Direct
Histone-fold0.0001222Direct
RBP11-like subunits of RNA polymerase0.0004126Direct
ADC-like0.0004126Direct
Cdc48 domain 2-like0.0004126Direct
beta-sandwich domain of Sec23/240.0004126Direct
Sm-like ribonucleoproteins0.0004476Direct
Nucleic acid-binding proteins0.0006572Direct
POZ domain0.001669Inherited
Ribosomal proteins S24e, L23 and L15e0.001744Inherited
S15/NS1 RNA-binding domain0.001744Inherited
F1F0 ATP synthase subunit C0.001744Inherited
P-loop containing nucleoside triphosphate hydrolases0.003322Inherited
Skp1 dimerisation domain-like0.00422Inherited
Translational machinery components0.00448Inherited
ACP-like0.009039Inherited
Translation proteins0.01072Inherited
PAZ domain0.02268Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02476Inherited
TPR-like0.02644Inherited
Ribosomal protein S5 domain 2-like0.0331Inherited
WD40 repeat-like0.04653Inherited
Class II aaRS ABD-related0.06777Inherited
L30e-like0.06777Inherited
"Winged helix" DNA-binding domain0.06952Inherited
Class II aaRS and biotin synthetases0.07298Inherited
Translation proteins SH3-like domain0.07654Inherited
ARM repeat0.101Inherited
HMG-box0.1131Inherited
Sec1/munc18-like (SM) proteins0.1231Inherited
SET domain0.1718Inherited
Nucleotidylyl transferase0.1749Inherited
Activating enzymes of the ubiquitin-like proteins0.2003Inherited
SMAD MH1 domain0.3112Inherited
Cullin homology domain0.3112Inherited
CCCH zinc finger0.327Inherited
RNA-binding domain, RBD0.3499Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4021Inherited
SNARE-like0.4021Inherited
EGF/Laminin0.5487Inherited
Cysteine-rich domain0.7772Inherited
F-box domain0.9965Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
LEM domain0Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
RNA-polymerase beta0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000001852Direct
RecA protein-like (ATPase-domain)0.000008969Direct
Extended AAA-ATPase domain0.00002967Direct
Nucleosome core histones0.0001414Direct
Cdc48 N-terminal domain-like0.0005222Direct
Anticodon-binding domain0.0005222Direct
Cdc48 domain 2-like0.0005222Direct
BTB/POZ domain0.0006931Direct
Single strand DNA-binding domain, SSB0.001046Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.002212Inherited
F1F0 ATP synthase subunit C0.002215Inherited
Translational machinery components0.002452Inherited
Skp1 dimerisation domain-like0.002979Inherited
Pumilio repeat0.008115Inherited
Cyclin0.008115Inherited
WD40-repeat0.01738Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0317Inherited
Elongation factors0.03189Inherited
Cold shock DNA-binding domain-like0.03665Inherited
Ubiquitin-related0.04567Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.05569Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0592Inherited
Retrovirus zinc finger-like domains0.06259Inherited
Actin/HSP700.08114Inherited
Anticodon-binding domain of Class II aaRS0.1041Inherited
L30e/L7ae ribosomal proteins0.1041Inherited
Clathrin adaptor core protein0.1041Inherited
RNA editing terminal uridyl transferase 2, RET2, domain 20.1041Inherited
SMAD domain0.1734Inherited
Canonical RBD0.1922Inherited
Motor proteins0.2259Inherited
Nitrogenase iron protein-like0.2781Inherited
SMAD MH1 domain0.2781Inherited
Cullin homology domain0.2781Inherited
Tetratricopeptide repeat (TPR)0.2896Inherited
CCCH zinc finger0.2896Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.2896Inherited
Histone lysine methyltransferases0.3288Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4887Inherited
G proteins0.6504Inherited
Protein serine/threonine phosphatase0.827Inherited
Protein kinases, catalytic subunit0.994Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
The spindle assembly checkpoint protein mad20Direct
GroEL equatorial domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Ribosomal protein L10-like0Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
GroEL apical domain-like0.0000000006861Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000004531Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00005192Direct
Histone-fold0.0001001Direct
Cdc48 domain 2-like0.0003405Direct
beta-sandwich domain of Sec23/240.0003405Direct
RBP11-like subunits of RNA polymerase0.0003405Direct
ADC-like0.0003405Direct
Sm-like ribonucleoproteins0.0003696Direct
Nucleic acid-binding proteins0.0005446Direct
POZ domain0.001396Inherited
F1F0 ATP synthase subunit C0.001459Inherited
Ribosomal proteins S24e, L23 and L15e0.001459Inherited
S15/NS1 RNA-binding domain0.001459Inherited
P-loop containing nucleoside triphosphate hydrolases0.002806Inherited
Skp1 dimerisation domain-like0.003575Inherited
Translational machinery components0.0038Inherited
ACP-like0.007755Inherited
Translation proteins0.009229Inherited
PAZ domain0.01978Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02163Inherited
TPR-like0.02313Inherited
Ribosomal protein S5 domain 2-like0.0291Inherited
WD40 repeat-like0.04114Inherited
Class II aaRS ABD-related0.0605Inherited
L30e-like0.0605Inherited
"Winged helix" DNA-binding domain0.06209Inherited
Class II aaRS and biotin synthetases0.06528Inherited
Translation proteins SH3-like domain0.06857Inherited
Retrovirus zinc finger-like domains0.06857Inherited
ARM repeat0.09126Inherited
HMG-box0.1024Inherited
Sec1/munc18-like (SM) proteins0.1117Inherited
SET domain0.1576Inherited
Nucleotidylyl transferase0.1605Inherited
Activating enzymes of the ubiquitin-like proteins0.1845Inherited
Cullin homology domain0.2918Inherited
SMAD MH1 domain0.2918Inherited
CCCH zinc finger0.3074Inherited
RNA-binding domain, RBD0.3298Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.3815Inherited
SNARE-like0.3815Inherited
EGF/Laminin0.5268Inherited
Cysteine-rich domain0.7582Inherited
F-box domain0.9864Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0003405Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0003405Direct
    49599,54695
  • 49599 - TRAF domain-like
  • 54695 - POZ domain
  • 0.0007095Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001459Inherited
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.005857Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01398Inherited
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.01732Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02163Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0605Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0605Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1122Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1137Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2507Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.3448Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.6591Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02163Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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