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Worm Phenotype (WP): gametogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   development variant [WBPhenotype:0000518] <7>(508|582) (508|247|69)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(128|124) (128|49|15)
0:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (65|26|6)
- 1:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (63|26|6)
- 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Smc hinge domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L10Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10-like0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL equatorial domain-like0Direct
GroEL apical domain-like0.000000001559Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000007896Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001501Direct
Histone-fold0.0002981Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0004259Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0004259Direct
DNA repair protein MutS, domain III0.0005176Direct
Cdc48 domain 2-like0.0005176Direct
RBP11-like subunits of RNA polymerase0.0005176Direct
beta-sandwich domain of Sec23/240.0005176Direct
ADC-like0.0005176Direct
Nucleic acid-binding proteins0.0006835Direct
Sm-like ribonucleoproteins0.0008885Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0009218Direct
S15/NS1 RNA-binding domain0.002163Inherited
Ribosomal proteins S24e, L23 and L15e0.002163Inherited
F1F0 ATP synthase subunit C0.002163Inherited
POZ domain0.003268Inherited
Translational machinery components0.005499Inherited
Sec1/munc18-like (SM) proteins0.005499Inherited
Ribosomal protein S5 domain 2-like0.005785Inherited
Skp1 dimerisation domain-like0.008714Inherited
Quinoprotein alcohol dehydrogenase-like0.009312Inherited
ACP-like0.01102Inherited
Translation proteins0.01604Inherited
P-loop containing nucleoside triphosphate hydrolases0.02523Inherited
Retrovirus zinc finger-like domains0.02823Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02981Inherited
PAZ domain0.0309Inherited
"Winged helix" DNA-binding domain0.03558Inherited
TPR-like0.03727Inherited
HMG-box0.04045Inherited
Class II aaRS and biotin synthetases0.04524Inherited
L30e-like0.0495Inherited
Class II aaRS ABD-related0.0495Inherited
WD40 repeat-like0.05238Inherited
Cullin homology domain0.08605Inherited
FKBP-like0.08605Inherited
Translation proteins SH3-like domain0.1029Inherited
ARM repeat0.1942Inherited
SET domain0.221Inherited
Nucleotidylyl transferase0.2379Inherited
Activating enzymes of the ubiquitin-like proteins0.2435Inherited
SMAD MH1 domain0.36Inherited
CCCH zinc finger0.4035Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4716Inherited
SNARE-like0.4716Inherited
RNA-binding domain, RBD0.4892Inherited
EGF/Laminin0.6821Inherited
Cysteine-rich domain0.7556Inherited
Protein kinase-like (PK-like)0.9938Inherited
F-box domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
RNA-polymerase beta0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L10Direct
14-3-3 protein0Direct
LEM domain0Direct
POU-specific domain0Direct
Trunk domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
beta-sandwich domain of Sec23/240Direct
Proteasome subunits0Direct
Smc hinge domain0Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000003377Direct
RecA protein-like (ATPase-domain)0.00001333Direct
Nucleosome core histones0.000374Direct
Anticodon-binding domain0.0006771Direct
Cdc48 N-terminal domain-like0.0006771Direct
DNA gyrase/MutL, N-terminal domain0.0006771Direct
Cdc48 domain 2-like0.0006771Direct
DNA repair protein MutS, domain III0.0006771Direct
Extended AAA-ATPase domain0.0007935Direct
BTB/POZ domain0.0009072Direct
F1F0 ATP synthase subunit C0.002845Inherited
Translational machinery components0.003311Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.003987Inherited
Skp1 dimerisation domain-like0.006828Inherited
Cyclin0.007186Inherited
Pumilio repeat0.01296Inherited
Cold shock DNA-binding domain-like0.01383Inherited
WD40-repeat0.01732Inherited
Retrovirus zinc finger-like domains0.02321Inherited
HMG-box0.03366Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.03761Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.03927Inherited
Elongation factors0.04239Inherited
Ubiquitin-related0.06348Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.07378Inherited
L30e/L7ae ribosomal proteins0.07378Inherited
FKBP immunophilin/proline isomerase0.07378Inherited
Actin/HSP700.08434Inherited
RNA editing terminal uridyl transferase 2, RET2, domain 20.13Inherited
Clathrin adaptor core protein0.13Inherited
Anticodon-binding domain of Class II aaRS0.13Inherited
SMAD domain0.219Inherited
Tetratricopeptide repeat (TPR)0.2851Inherited
Canonical RBD0.3098Inherited
Motor proteins0.3299Inherited
Nitrogenase iron protein-like0.3317Inherited
SMAD MH1 domain0.3317Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.374Inherited
CCCH zinc finger0.374Inherited
Histone lysine methyltransferases0.3948Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.5636Inherited
G proteins0.8377Inherited
Protein kinases, catalytic subunit0.8755Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L10-like0Direct
LEM domain0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Smc hinge domain0Direct
GroEL-intermediate domain like0Direct
GroEL apical domain-like0.000000001247Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000006455Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001239Direct
Histone-fold0.0002471Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0003536Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003536Direct
ADC-like0.0004303Direct
Cdc48 domain 2-like0.0004303Direct
DNA repair protein MutS, domain III0.0004303Direct
beta-sandwich domain of Sec23/240.0004303Direct
RBP11-like subunits of RNA polymerase0.0004303Direct
Nucleic acid-binding proteins0.0005707Direct
Sm-like ribonucleoproteins0.0007438Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000772Direct
S15/NS1 RNA-binding domain0.001826Inherited
Ribosomal proteins S24e, L23 and L15e0.001826Inherited
F1F0 ATP synthase subunit C0.001826Inherited
POZ domain0.00277Inherited
Translational machinery components0.004687Inherited
Sec1/munc18-like (SM) proteins0.004687Inherited
Ribosomal protein S5 domain 2-like0.004935Inherited
Skp1 dimerisation domain-like0.007485Inherited
Quinoprotein alcohol dehydrogenase-like0.008005Inherited
ACP-like0.009495Inherited
Translation proteins0.01389Inherited
P-loop containing nucleoside triphosphate hydrolases0.02205Inherited
Retrovirus zinc finger-like domains0.02474Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02616Inherited
PAZ domain0.02713Inherited
"Winged helix" DNA-binding domain0.03135Inherited
TPR-like0.03288Inherited
HMG-box0.03573Inherited
Class II aaRS and biotin synthetases0.04004Inherited
Class II aaRS ABD-related0.04391Inherited
L30e-like0.04391Inherited
WD40 repeat-like0.04647Inherited
Cullin homology domain0.0774Inherited
FKBP-like0.0774Inherited
Translation proteins SH3-like domain0.09302Inherited
ARM repeat0.1786Inherited
SET domain0.2043Inherited
Nucleotidylyl transferase0.2205Inherited
Activating enzymes of the ubiquitin-like proteins0.2259Inherited
SMAD MH1 domain0.3397Inherited
CCCH zinc finger0.3823Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.4499Inherited
SNARE-like0.4499Inherited
RNA-binding domain, RBD0.4674Inherited
EGF/Laminin0.661Inherited
Cysteine-rich domain0.7356Inherited
Protein kinase-like (PK-like)0.9831Inherited
F-box domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001356Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003536Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0004303Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0004303Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0004303Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0.001826Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001826Inherited
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.01158Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01825Inherited
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.02474Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02616Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0774Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0774Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1168Inherited
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.1356Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1465Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3295Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.4033Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7565Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001356Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003536Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02616Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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