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Worm Phenotype (WP): gametogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   development variant [WBPhenotype:0000518] <4>(511|586) (511|253|70)
+ 1:   cell development variant [WBPhenotype:0000529] <16>(118|121) (119|46|13)
0:   gametogenesis variant [WBPhenotype:0000774] <2>(56|54) (57|22|5)
- 1:   germ cell development variant [WBPhenotype:0000812] <6>(45|42) (46|17|5)
- 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
Ribosomal protein L10-like0Direct
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Smc hinge domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
14-3-3 protein0Direct
The spindle assembly checkpoint protein mad20Direct
GroEL apical domain-like0.0000000008035Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.00000534Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00007977Direct
Histone-fold0.0001106Direct
Nucleic acid-binding proteins0.0001827Direct
beta-sandwich domain of Sec23/240.0004022Direct
RBP11-like subunits of RNA polymerase0.0004022Direct
ADC-like0.0004022Direct
Cdc48 domain 2-like0.0004022Direct
Sm-like ribonucleoproteins0.0005376Direct
POZ domain0.0008254Direct
S15/NS1 RNA-binding domain0.001706Inherited
F1F0 ATP synthase subunit C0.001706Inherited
Ribosomal proteins S24e, L23 and L15e0.001706Inherited
Translational machinery components0.004395Inherited
Sec1/munc18-like (SM) proteins0.004395Inherited
Skp1 dimerisation domain-like0.005157Inherited
P-loop containing nucleoside triphosphate hydrolases0.007126Inherited
Translation proteins0.01203Inherited
WD40 repeat-like0.01959Inherited
PAZ domain0.02212Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02448Inherited
TPR-like0.03209Inherited
Ribosomal protein S5 domain 2-like0.03775Inherited
"Winged helix" DNA-binding domain0.04484Inherited
L30e-like0.07344Inherited
Class II aaRS ABD-related0.07344Inherited
Class II aaRS and biotin synthetases0.08157Inherited
Translation proteins SH3-like domain0.08427Inherited
HMG-box0.1251Inherited
ARM repeat0.1657Inherited
SET domain0.188Inherited
Activating enzymes of the ubiquitin-like proteins0.2154Inherited
Cullin homology domain0.33Inherited
SMAD MH1 domain0.33Inherited
CCCH zinc finger0.3536Inherited
Nucleotidylyl transferase0.3825Inherited
RNA-binding domain, RBD0.406Inherited
SNARE-like0.4298Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.5575Inherited
EGF/Laminin0.5977Inherited
Cysteine-rich domain0.7114Inherited
F-box domain1Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
RNA-polymerase beta0Direct
beta-sandwich domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
14-3-3 protein0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Trunk domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Proteasome subunits0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Smc hinge domain0Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000001918Direct
RecA protein-like (ATPase-domain)0.000009222Direct
Nucleosome core histones0.0001505Direct
Extended AAA-ATPase domain0.0002246Direct
BTB/POZ domain0.0003799Direct
Cdc48 N-terminal domain-like0.0005339Direct
Anticodon-binding domain0.0005339Direct
Cdc48 domain 2-like0.0005339Direct
Single strand DNA-binding domain, SSB0.001076Inherited
F1F0 ATP synthase subunit C0.002273Inherited
Translational machinery components0.002522Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.002657Inherited
Skp1 dimerisation domain-like0.003863Inherited
Cyclin0.005022Inherited
Cold shock DNA-binding domain-like0.005022Inherited
Pumilio repeat0.005022Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.03261Inherited
Elongation factors0.03295Inherited
Ubiquitin-related0.04724Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.06158Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.06805Inherited
Actin/HSP700.09356Inherited
HMG-box0.1066Inherited
Clathrin adaptor core protein0.1137Inherited
Anticodon-binding domain of Class II aaRS0.1137Inherited
Nitrogenase iron protein-like0.1137Inherited
L30e/L7ae ribosomal proteins0.1137Inherited
RNA editing terminal uridyl transferase 2, RET2, domain 20.1137Inherited
SMAD domain0.1905Inherited
Canonical RBD0.2388Inherited
Motor proteins0.2595Inherited
SMAD MH1 domain0.2993Inherited
Cullin homology domain0.2993Inherited
CCCH zinc finger0.3202Inherited
Histone lysine methyltransferases0.3559Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.424Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.6697Inherited
G proteins0.7737Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Zn-finger domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Smc hinge domain0Direct
LEM domain0Direct
GroEL equatorial domain-like0Direct
Helical domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
GroEL apical domain-like0.0000000006359Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.00000432Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006504Direct
Histone-fold0.00009032Direct
Nucleic acid-binding proteins0.0001493Direct
Cdc48 domain 2-like0.0003307Direct
RBP11-like subunits of RNA polymerase0.0003307Direct
ADC-like0.0003307Direct
beta-sandwich domain of Sec23/240.0003307Direct
Sm-like ribonucleoproteins0.0004431Direct
POZ domain0.0006826Direct
S15/NS1 RNA-binding domain0.001422Inherited
F1F0 ATP synthase subunit C0.001422Inherited
Ribosomal proteins S24e, L23 and L15e0.001422Inherited
Translational machinery components0.003713Inherited
Sec1/munc18-like (SM) proteins0.003713Inherited
Skp1 dimerisation domain-like0.004365Inherited
P-loop containing nucleoside triphosphate hydrolases0.006058Inherited
Translation proteins0.01032Inherited
WD40 repeat-like0.01698Inherited
PAZ domain0.01922Inherited
PAP/OAS1 substrate-binding domain0.01922Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02133Inherited
TPR-like0.02805Inherited
Ribosomal protein S5 domain 2-like0.03312Inherited
"Winged helix" DNA-binding domain0.03946Inherited
L30e-like0.06545Inherited
Class II aaRS ABD-related0.06545Inherited
Class II aaRS and biotin synthetases0.07292Inherited
Translation proteins SH3-like domain0.0754Inherited
HMG-box0.1134Inherited
ARM repeat0.1514Inherited
SET domain0.1724Inherited
Activating enzymes of the ubiquitin-like proteins0.1987Inherited
SMAD MH1 domain0.3095Inherited
Cullin homology domain0.3095Inherited
CCCH zinc finger0.3327Inherited
Nucleotidylyl transferase0.361Inherited
RNA-binding domain, RBD0.3839Inherited
SNARE-like0.4075Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.5349Inherited
EGF/Laminin0.5755Inherited
Cysteine-rich domain0.691Inherited
Protein kinase-like (PK-like)1Inherited
F-box domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0003307Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0003307Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.001417Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001422Inherited
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.00707Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01367Inherited
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.01922Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02133Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.06545Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.1197Inherited
    55753,55753
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 0.1197Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1238Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.2758Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.3675Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.7007Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.001417Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02133Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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