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Worm Phenotype (WP): meiosis variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   development variant [WBPhenotype:0000518] <7>(508|582) (508|247|69)
+ + + + 4:   organism development variant [WBPhenotype:0000531] <10>(506|581) (506|247|69)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(128|124) (128|49|15)
+ + + 3:   lethal [WBPhenotype:0000062] <5>(500|579) (500|246|69)
+ + + 3:   embryonic development variant [WBPhenotype:0000749] <21>(447|536) (447|232|64)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ + 2:   embryonic lethal [WBPhenotype:0000050] <7>(445|536) (445|231|64)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (65|26|6)
+ 1:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ 1:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ 1:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (63|26|6)
0:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
- 1:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
- 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   meiotic spindle defective [WBPhenotype:0001868] <4>(2|2) (2|1|0)
- 1:   developmental delay [WBPhenotype:0000848] <2>(2|1) (2|1|0)
- 1:   meiotic DNA double strand break formation variant [WBPhenotype:0001921] <1>(0|0) (0|0|0)
- 1:   polar body extrusion defective early emb [WBPhenotype:0000777] <1>(0|0) (0|0|0)
- 1:   anaphase I progression variant early embryo [WBPhenotype:0002006](0|0) (0|0|0)
- 1:   first polar body position variant [WBPhenotype:0000194](0|0) (0|0|0)
- 1:   meiosis metaphase to anaphase transition block [WBPhenotype:0001216](1|1) (1|0|0)
- 1:   no polar body formation [WBPhenotype:0000372](0|0) (0|0|0)
- 1:   passage through meiosis defective early emb [WBPhenotype:0000776](1|2) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
Ribosomal protein L10Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000009336Direct
L30e-like0.00002237Direct
DNA repair protein MutS, domain III0.00006719Direct
Cdc48 domain 2-like0.00006719Direct
ADC-like0.00006719Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001041Direct
Ribosomal proteins S24e, L23 and L15e0.0003004Direct
F1F0 ATP synthase subunit C0.0003004Direct
FKBP-like0.0007746Direct
Translational machinery components0.0008113Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.005124Inherited
POZ domain0.006497Inherited
Translation proteins SH3-like domain0.009018Inherited
Smc hinge domain0.01873Inherited
Quinoprotein alcohol dehydrogenase-like0.01873Inherited
GroEL-intermediate domain like0.02026Inherited
GroEL apical domain-like0.02026Inherited
GroEL equatorial domain-like0.02026Inherited
TPR-like0.02103Inherited
P-loop containing nucleoside triphosphate hydrolases0.033Inherited
Translation proteins0.03801Inherited
SNARE-like0.03866Inherited
Sm-like ribonucleoproteins0.06962Inherited
S15/NS1 RNA-binding domain0.07924Inherited
Nucleic acid-binding proteins0.09463Inherited
Class II aaRS and biotin synthetases0.1264Inherited
Ribosomal protein S5 domain 2-like0.1264Inherited
"Winged helix" DNA-binding domain0.2169Inherited
Protein kinase-like (PK-like)0.3374Inherited
Nucleotidylyl transferase0.3868Inherited
Activating enzymes of the ubiquitin-like proteins0.536Inherited
Histone-fold1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L10Direct
LEM domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0Direct
Skp1 dimerisation domain-like6.242e-16Direct
RecA protein-like (ATPase-domain)0.0000007059Direct
L30e/L7ae ribosomal proteins0.000008402Direct
BTB/POZ domain0.0000174Direct
Anticodon-binding domain0.00009849Direct
Cdc48 N-terminal domain-like0.00009849Direct
Cdc48 domain 2-like0.00009849Direct
DNA repair protein MutS, domain III0.00009849Direct
F1F0 ATP synthase subunit C0.0004386Direct
Motor proteins0.0006779Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001291Inherited
FKBP immunophilin/proline isomerase0.001291Inherited
Clathrin adaptor core protein0.002504Inherited
Group II chaperonin (CCT, TRIC), apical domain0.003899Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.003899Inherited
Elongation factors0.004377Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.007457Inherited
Translational machinery components0.03543Inherited
Smc hinge domain0.03543Inherited
Tetratricopeptide repeat (TPR)0.05243Inherited
Extended AAA-ATPase domain0.07924Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.08923Inherited
Cold shock DNA-binding domain-like0.08923Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.1227Inherited
Nitrogenase iron protein-like0.2082Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.3811Inherited
Protein kinases, catalytic subunit0.4625Inherited
Nucleosome core histones0.9726Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000007638Direct
L30e-like0.00001835Direct
ADC-like0.00005535Direct
Cdc48 domain 2-like0.00005535Direct
DNA repair protein MutS, domain III0.00005535Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00008594Direct
Ribosomal proteins S24e, L23 and L15e0.000249Direct
F1F0 ATP synthase subunit C0.000249Direct
FKBP-like0.0006477Direct
Translational machinery components0.0006785Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.004365Inherited
POZ domain0.005551Inherited
Translation proteins SH3-like domain0.007749Inherited
Quinoprotein alcohol dehydrogenase-like0.01627Inherited
Smc hinge domain0.01627Inherited
GroEL equatorial domain-like0.01764Inherited
GroEL apical domain-like0.01764Inherited
GroEL-intermediate domain like0.01764Inherited
TPR-like0.01833Inherited
P-loop containing nucleoside triphosphate hydrolases0.02901Inherited
Translation proteins0.03355Inherited
SNARE-like0.03413Inherited
Sm-like ribonucleoproteins0.06224Inherited
S15/NS1 RNA-binding domain0.07113Inherited
Nucleic acid-binding proteins0.08529Inherited
Class II aaRS and biotin synthetases0.1149Inherited
Ribosomal protein S5 domain 2-like0.1149Inherited
"Winged helix" DNA-binding domain0.2004Inherited
Protein kinase-like (PK-like)0.3174Inherited
Nucleotidylyl transferase0.3663Inherited
Activating enzymes of the ubiquitin-like proteins0.5138Inherited
Histone-fold1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 7.012e-16Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005535Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00005535Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00006969Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0.000249Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000249Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.001438Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.004365Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.01764Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.01764Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1748Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.4989Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.6203Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.004365Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.01764Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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