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Worm Phenotype (WP): meiosis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ 1:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ 1:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
0:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
- 1:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
- 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   meiotic spindle defective [WBPhenotype:0001868] <4>(2|2) (2|1|0)
- 1:   meiosis defective early emb [WBPhenotype:0001041] <1>(3|4) (3|0|0)
- 1:   meiotic DNA double strand break formation variant [WBPhenotype:0001921] <1>(0|0) (0|0|0)
- 1:   polar body extrusion defective early emb [WBPhenotype:0000777] <1>(0|0) (0|0|0)
- 1:   anaphase I progression variant early embryo [WBPhenotype:0002006](0|0) (0|0|0)
- 1:   first polar body position variant [WBPhenotype:0000194](0|0) (0|0|0)
- 1:   meiosis metaphase to anaphase transition block [WBPhenotype:0001216](1|1) (1|0|0)
- 1:   no polar body formation [WBPhenotype:0000372](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000000001492Direct
Translation proteins SH3-like domain0.000005501Direct
ADC-like0.00004085Direct
Cdc48 domain 2-like0.00004085Direct
F1F0 ATP synthase subunit C0.000185Direct
Ribosomal proteins S24e, L23 and L15e0.000185Direct
S15/NS1 RNA-binding domain0.000185Direct
L30e-like0.0002352Direct
Translational machinery components0.000504Direct
POZ domain0.0006382Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0007381Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.003291Inherited
TPR-like0.006169Inherited
Translation proteins0.007349Inherited
Smc hinge domain0.01574Inherited
GroEL-intermediate domain like0.01637Inherited
GroEL equatorial domain-like0.01637Inherited
GroEL apical domain-like0.01637Inherited
P-loop containing nucleoside triphosphate hydrolases0.02521Inherited
Class II aaRS and biotin synthetases0.03173Inherited
SNARE-like0.03367Inherited
Sm-like ribonucleoproteins0.05709Inherited
Nucleic acid-binding proteins0.09832Inherited
Nucleotidylyl transferase0.2381Inherited
Ribosomal protein S5 domain 2-like0.2447Inherited
"Winged helix" DNA-binding domain0.3067Inherited
Activating enzymes of the ubiquitin-like proteins0.3536Inherited
Protein kinase-like (PK-like)0.9073Inherited
Histone-fold0.9692Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0Direct
LEM domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
RecA protein-like (ATPase-domain)0.0000003156Direct
BTB/POZ domain0.000001881Direct
Cdc48 domain 2-like0.00005795Direct
Anticodon-binding domain0.00005795Direct
Cdc48 N-terminal domain-like0.00005795Direct
L30e/L7ae ribosomal proteins0.0002611Direct
F1F0 ATP synthase subunit C0.0002611Direct
Motor proteins0.0004654Direct
Clathrin adaptor core protein0.001519Inherited
Elongation factors0.002222Inherited
Group II chaperonin (CCT, TRIC), apical domain0.00305Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.00305Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.004631Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.007103Inherited
Nitrogenase iron protein-like0.01032Inherited
Extended AAA-ATPase domain0.02354Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.02951Inherited
Smc hinge domain0.03062Inherited
Translational machinery components0.03062Inherited
Tetratricopeptide repeat (TPR)0.03583Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.07577Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.1042Inherited
Cold shock DNA-binding domain-like0.1465Inherited
Protein serine/threonine phosphatase0.3282Inherited
Nucleosome core histones0.9328Inherited
Protein kinases, catalytic subunit0.9614Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000000001175Direct
Translation proteins SH3-like domain0.000004474Direct
Cdc48 domain 2-like0.00003338Direct
ADC-like0.00003338Direct
F1F0 ATP synthase subunit C0.0001519Direct
Ribosomal proteins S24e, L23 and L15e0.0001519Direct
S15/NS1 RNA-binding domain0.0001519Direct
L30e-like0.0001933Direct
Translational machinery components0.0004173Direct
POZ domain0.0005289Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000613Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002781Inherited
TPR-like0.005255Inherited
Translation proteins0.006276Inherited
Smc hinge domain0.01365Inherited
GroEL equatorial domain-like0.0142Inherited
GroEL apical domain-like0.0142Inherited
GroEL-intermediate domain like0.0142Inherited
P-loop containing nucleoside triphosphate hydrolases0.02205Inherited
Class II aaRS and biotin synthetases0.02789Inherited
SNARE-like0.02962Inherited
Sm-like ribonucleoproteins0.05075Inherited
Nucleic acid-binding proteins0.08874Inherited
Nucleotidylyl transferase0.2206Inherited
Ribosomal protein S5 domain 2-like0.227Inherited
"Winged helix" DNA-binding domain0.2874Inherited
Activating enzymes of the ubiquitin-like proteins0.3335Inherited
Protein kinase-like (PK-like)0.892Inherited
Histone-fold0.957Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00003338Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0001519Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0007413Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0008997Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002781Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0142Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0142Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1497Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.3354Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.4642Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002781Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0142Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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