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Worm Phenotype (WP): germ cell development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   development variant [WBPhenotype:0000518] <4>(506|581) (506|253|70)
+ + 2:   cell development variant [WBPhenotype:0000529] <16>(117|119) (118|47|13)
+ 1:   gametogenesis variant [WBPhenotype:0000774] <2>(56|54) (57|22|5)
0:   germ cell development variant [WBPhenotype:0000812] <6>(45|42) (46|17|5)
- 1:   meiosis variant [WBPhenotype:0000775] <10>(33|29) (33|14|4)
- 1:   germline proliferation variant [WBPhenotype:0000823] <6>(6|5) (6|0|0)
- 1:   distal germline variant [WBPhenotype:0000288](0|1) (0|0|0)
- 1:   feminization of germline [WBPhenotype:0000682](1|0) (1|0|0)
- 1:   masculinization of germline [WBPhenotype:0000683](1|2) (1|0|0)
- 1:   no germ line [WBPhenotype:0000215](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10-like0Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
Skp1 dimerisation domain-like0.00000000000007251Direct
Nucleic acid-binding proteins0.00000000003009Direct
GroEL apical domain-like0.0000000002395Direct
Sm-like ribonucleoproteins0.00000000111Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000001754Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000002613Direct
Translation proteins SH3-like domain0.0001157Direct
HMG-box0.0002302Direct
Cdc48 domain 2-like0.0002522Direct
ADC-like0.0002522Direct
RBP11-like subunits of RNA polymerase0.0002522Direct
Ribosomal proteins S24e, L23 and L15e0.001088Inherited
F1F0 ATP synthase subunit C0.001088Inherited
S15/NS1 RNA-binding domain0.001088Inherited
Nucleotidylyl transferase0.001709Inherited
L30e-like0.001963Inherited
SMAD MH1 domain0.00284Inherited
Translational machinery components0.00284Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.005687Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01649Inherited
Ribosomal protein S5 domain 2-like0.01897Inherited
POZ domain0.03863Inherited
"Winged helix" DNA-binding domain0.04319Inherited
SET domain0.09874Inherited
ARM repeat0.1196Inherited
Histone-fold0.1281Inherited
P-loop containing nucleoside triphosphate hydrolases0.19Inherited
EGF/Laminin0.2174Inherited
Translation proteins0.589Inherited
SNARE-like0.7088Inherited
Activating enzymes of the ubiquitin-like proteins0.7781Inherited
TPR-like0.7879Inherited
Protein kinase-like (PK-like)0.8312Inherited
Class II aaRS and biotin synthetases0.9181Inherited
F-box domain0.9543Inherited
Cysteine-rich domain0.9894Inherited
RNA-binding domain, RBD1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
RNA-polymerase beta0Direct
Proteasome subunits0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Smc hinge domain0Direct
Skp1 dimerisation domain-like0.000000000000116Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000006373Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000143Direct
Pumilio repeat0.0000002768Direct
RecA protein-like (ATPase-domain)0.000004472Direct
Nucleosome core histones0.00002318Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0002023Direct
Actin/HSP700.0002682Direct
Cdc48 domain 2-like0.0003319Direct
Anticodon-binding domain0.0003319Direct
Cdc48 N-terminal domain-like0.0003319Direct
RNA editing terminal uridyl transferase 2, RET2, domain 20.0003319Direct
HMG-box0.000464Direct
Single strand DNA-binding domain, SSB0.0005572Direct
Cold shock DNA-binding domain-like0.0009834Direct
F1F0 ATP synthase subunit C0.001429Inherited
L30e/L7ae ribosomal proteins0.001429Inherited
Translational machinery components0.001446Inherited
SMAD domain0.001446Inherited
SMAD MH1 domain0.003765Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.00421Inherited
Clathrin adaptor core protein0.007704Inherited
Elongation factors0.01913Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02177Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.03234Inherited
Nitrogenase iron protein-like0.04528Inherited
Histone lysine methyltransferases0.06934Inherited
BTB/POZ domain0.07794Inherited
Extended AAA-ATPase domain0.1534Inherited
Motor proteins0.296Inherited
G proteins0.8272Inherited
Protein kinases, catalytic subunit0.834Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.8983Inherited
Canonical RBD1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Ribosomal protein L10-like0Direct
GroEL equatorial domain-like0Direct
GroEL-intermediate domain like0Direct
Smc hinge domain0Direct
LEM domain0Direct
Skp1 dimerisation domain-like0.00000000000005658Direct
Nucleic acid-binding proteins0.00000000002365Direct
GroEL apical domain-like0.0000000001888Direct
Sm-like ribonucleoproteins0.0000000008768Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000001387Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000002108Direct
Translation proteins SH3-like domain0.00009439Direct
HMG-box0.0001882Direct
RBP11-like subunits of RNA polymerase0.0002064Direct
Cdc48 domain 2-like0.0002064Direct
ADC-like0.0002064Direct
PAP/OAS1 substrate-binding domain0.0008877Direct
Ribosomal proteins S24e, L23 and L15e0.0009007Direct
F1F0 ATP synthase subunit C0.0009007Direct
S15/NS1 RNA-binding domain0.0009007Direct
Nucleotidylyl transferase0.001423Inherited
L30e-like0.001639Inherited
Translational machinery components0.002384Inherited
SMAD MH1 domain0.002384Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.004818Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01422Inherited
Ribosomal protein S5 domain 2-like0.01642Inherited
POZ domain0.03388Inherited
"Winged helix" DNA-binding domain0.03796Inherited
SET domain0.0887Inherited
ARM repeat0.1081Inherited
Histone-fold0.1161Inherited
P-loop containing nucleoside triphosphate hydrolases0.1742Inherited
EGF/Laminin0.2003Inherited
Translation proteins0.5666Inherited
SNARE-like0.6883Inherited
Activating enzymes of the ubiquitin-like proteins0.7597Inherited
TPR-like0.7699Inherited
Protein kinase-like (PK-like)0.8149Inherited
Class II aaRS and biotin synthetases0.9055Inherited
F-box domain0.9432Inherited
Cysteine-rich domain0.9797Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000001058Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0002064Direct
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.0003293Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.000816Direct
    55753,55753
  • 55753 - Actin depolymerizing proteins
  • 55753 - Actin depolymerizing proteins
  • 0.0009007Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0009007Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.004938Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.005563Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.007725Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.01422Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.06073Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.4632Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.000816Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.01422Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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