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Worm Phenotype (WP): germ cell development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|69)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ 1:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
0:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
- 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
- 1:   germline proliferation variant [WBPhenotype:0000823] <6>(6|5) (7|0|0)
- 1:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
- 1:   no germ line [WBPhenotype:0000215] <2>(7|9) (7|3|1)
- 1:   distal germline variant [WBPhenotype:0000288](0|1) (0|0|0)
- 1:   feminization of germline [WBPhenotype:0000682](1|0) (1|0|0)
- 1:   masculinization of germline [WBPhenotype:0000683](1|2) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
LEM domain0Direct
The spindle assembly checkpoint protein mad20Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Smc hinge domain0Direct
Zn-finger domain of Sec23/240Direct
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
Ribosomal protein L10-like0Direct
Skp1 dimerisation domain-like0.000000000000447Direct
GroEL apical domain-like0.0000000007171Direct
"Winged helix" DNA-binding domain0.0000000007565Direct
Nucleic acid-binding proteins0.000000002163Direct
Sm-like ribonucleoproteins0.000000004341Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000008773Direct
WD40 repeat-like0.000002491Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000004995Direct
Histone-fold0.00009178Direct
Translation proteins SH3-like domain0.0002303Direct
Class II aaRS and biotin synthetases0.0002957Direct
RBP11-like subunits of RNA polymerase0.0003845Direct
ADC-like0.0003845Direct
Cdc48 domain 2-like0.0003845Direct
beta-sandwich domain of Sec23/240.0003845Direct
POZ domain0.0004728Direct
HMG-box0.0007742Direct
Activating enzymes of the ubiquitin-like proteins0.001608Inherited
Ribosomal proteins S24e, L23 and L15e0.001629Inherited
S15/NS1 RNA-binding domain0.001629Inherited
F1F0 ATP synthase subunit C0.001629Inherited
TPR-like0.002525Inherited
L30e-like0.003163Inherited
SMAD MH1 domain0.004191Inherited
Translational machinery components0.004191Inherited
SNARE-like0.005222Inherited
Translation proteins0.008266Inherited
Cullin homology domain0.008472Inherited
ACP-like0.008472Inherited
CCCH zinc finger0.01337Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02331Inherited
Ribosomal protein S5 domain 2-like0.02984Inherited
Cysteine-rich domain0.1043Inherited
SET domain0.1323Inherited
P-loop containing nucleoside triphosphate hydrolases0.1597Inherited
ARM repeat0.5465Inherited
EGF/Laminin0.8674Inherited
Nucleotidylyl transferase0.9644Inherited
RNA-binding domain, RBD0.9776Inherited
F-box domain0.988Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
LEM domain0Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
RNA-polymerase beta0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0.0000000000006261Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000158Direct
Extended AAA-ATPase domain0.00000002794Direct
BTB/POZ domain0.00000003516Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000003762Direct
Pumilio repeat0.00000434Direct
RecA protein-like (ATPase-domain)0.000008087Direct
WD40-repeat0.000008295Direct
Nucleosome core histones0.0001089Direct
G proteins0.0001262Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0002304Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0003246Direct
Cdc48 N-terminal domain-like0.0004877Direct
Anticodon-binding domain0.0004877Direct
Anticodon-binding domain of Class II aaRS0.0004877Direct
Cdc48 domain 2-like0.0004877Direct
RNA editing terminal uridyl transferase 2, RET2, domain 20.0004877Direct
Actin/HSP700.0006047Direct
Single strand DNA-binding domain, SSB0.0009519Direct
Cyclin0.001437Inherited
L30e/L7ae ribosomal proteins0.002071Inherited
F1F0 ATP synthase subunit C0.002071Inherited
Retrovirus zinc finger-like domains0.002175Inherited
Translational machinery components0.002264Inherited
SMAD domain0.002264Inherited
SMAD MH1 domain0.005355Inherited
Cold shock DNA-binding domain-like0.008408Inherited
Clathrin adaptor core protein0.01083Inherited
Cullin homology domain0.01083Inherited
CCCH zinc finger0.02296Inherited
Elongation factors0.02951Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0299Inherited
Ubiquitin-related0.04176Inherited
Nitrogenase iron protein-like0.0607Inherited
Histone lysine methyltransferases0.078Inherited
Tetratricopeptide repeat (TPR)0.1634Inherited
Protein serine/threonine phosphatase0.812Inherited
Motor proteins0.9043Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.981Inherited
Canonical RBD0.9878Inherited
Protein kinases, catalytic subunit1Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
The spindle assembly checkpoint protein mad20Direct
GroEL equatorial domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Ribosomal protein L10-like0Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
Skp1 dimerisation domain-like0.0000000000003515Direct
GroEL apical domain-like0.0000000005689Direct
"Winged helix" DNA-binding domain0.0000000006002Direct
Nucleic acid-binding proteins0.000000001719Direct
Sm-like ribonucleoproteins0.000000003455Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000006989Direct
WD40 repeat-like0.000002018Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000004058Direct
Histone-fold0.00007515Direct
Translation proteins SH3-like domain0.0001893Direct
Class II aaRS and biotin synthetases0.0002435Direct
Cdc48 domain 2-like0.000317Direct
beta-sandwich domain of Sec23/240.000317Direct
RBP11-like subunits of RNA polymerase0.000317Direct
ADC-like0.000317Direct
POZ domain0.000391Direct
HMG-box0.0006434Direct
Retrovirus zinc finger-like domains0.001073Inherited
Activating enzymes of the ubiquitin-like proteins0.001344Inherited
F1F0 ATP synthase subunit C0.001361Inherited
Ribosomal proteins S24e, L23 and L15e0.001361Inherited
S15/NS1 RNA-binding domain0.001361Inherited
TPR-like0.002125Inherited
L30e-like0.002669Inherited
Translational machinery components0.003551Inherited
SMAD MH1 domain0.003551Inherited
SNARE-like0.004437Inherited
Translation proteins0.007078Inherited
Cullin homology domain0.007259Inherited
ACP-like0.007259Inherited
CCCH zinc finger0.01156Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02034Inherited
Ribosomal protein S5 domain 2-like0.02618Inherited
Cysteine-rich domain0.09423Inherited
SET domain0.1203Inherited
P-loop containing nucleoside triphosphate hydrolases0.146Inherited
ARM repeat0.5246Inherited
EGF/Laminin0.8512Inherited
Nucleotidylyl transferase0.9518Inherited
RNA-binding domain, RBD0.966Inherited
F-box domain0.9774Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases1Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000005944Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000317Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0.000317Direct
    49599,54695
  • 49599 - TRAF domain-like
  • 54695 - POZ domain
  • 0.0004058Direct
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.0006446Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0007207Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001361Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.009354Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01285Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02034Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.02316Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.05113Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.08724Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.9518Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02034Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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