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Worm Phenotype (WP): neuron development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
0:   neuron development variant [WBPhenotype:0000816] <6>(29|28) (30|11|4)
- 1:   synaptic transmission variant [WBPhenotype:0000584] <7>(6|5) (6|2|1)
- 1:   neurite development variant [WBPhenotype:0000944] <5>(6|8) (6|4|3)
- 1:   neuronal outgrowth variant [WBPhenotype:0000572] <4>(20|16) (21|8|4)
- 1:   chemosensory neuron development variant [WBPhenotype:0000878](0|0) (0|0|0)
- 1:   neuron cell body absent misplaced [WBPhenotype:0001333](1|1) (1|0|0)
- 1:   neuronal ion channel clustering defective [WBPhenotype:0001786](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Immunoglobulin0.00000000001641Direct
Fibronectin type III0.00000002039Direct
Sema domain0.00000002734Direct
GTPase activation domain, GAP0.00000008234Direct
Plexin repeat0.000003324Direct
Concanavalin A-like lectins/glucanases0.00006885Direct
Homeodomain-like0.0001394Direct
RNA-binding domain, RBD0.0001688Direct
Frizzled cysteine-rich domain0.001063Inherited
Troponin coil-coiled subunits0.001063Inherited
Cadherin-like0.001252Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.001762Inherited
SAM/Pointed domain0.002814Inherited
Tubulin nucleotide-binding domain-like0.003833Inherited
PDZ domain-like0.007982Inherited
Tubulin C-terminal domain-like0.008871Inherited
Protein kinase-like (PK-like)0.01487Inherited
P-loop containing nucleoside triphosphate hydrolases0.02109Inherited
dsRNA-binding domain-like0.02636Inherited
Cysteine-rich domain0.03006Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.0335Inherited
HLH, helix-loop-helix DNA-binding domain0.03747Inherited
Nicotinic receptor ligand binding domain-like0.06519Inherited
Calponin-homology domain, CH-domain0.07336Inherited
Eukaryotic type KH-domain (KH-domain type I)0.07336Inherited
PH domain-like0.08967Inherited
Growth factor receptor domain0.1457Inherited
SMAD/FHA domain0.2809Inherited
EGF/Laminin0.3481Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Troponin I0Direct
Fibronectin type III0.00000006031Direct
BCR-homology GTPase activation domain (BH-domain)0.0000001207Direct
Sema domain0.000001377Direct
I set domains0.000001952Direct
Plexin repeat0.000007644Direct
Homeodomain0.00002973Direct
Cadherin0.0003046Direct
Frizzled cysteine-rich domain0.001272Inherited
Laminin G-like module0.001608Inherited
Canonical RBD0.002454Inherited
Synaptotagmin-like (S variant)0.002871Inherited
Tandem AAA-ATPase domain0.004314Inherited
Tubulin, GTPase domain0.004923Inherited
Motor proteins0.008749Inherited
Tubulin, C-terminal domain0.01136Inherited
Protein kinases, catalytic subunit0.01591Inherited
Pleckstrin-homology domain (PH domain)0.01747Inherited
FHA domain0.01984Inherited
PDZ domain0.04031Inherited
Double-stranded RNA-binding domain (dsRBD)0.04607Inherited
HLH, helix-loop-helix DNA-binding domain0.05386Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06947Inherited
Calponin-homology domain, CH-domain0.08785Inherited
Eukaryotic type KH-domain (KH-domain type I)0.08785Inherited
Nicotinic receptor ligand binding domain-like0.1024Inherited
Growth factor receptor domain0.1319Inherited
G proteins0.2905Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Immunoglobulin0.00000000001296Direct
Fibronectin type III0.00000001628Direct
Sema domain0.00000002184Direct
GTPase activation domain, GAP0.00000006595Direct
Plexin repeat0.000002699Direct
Concanavalin A-like lectins/glucanases0.00005632Direct
Homeodomain-like0.0001144Direct
RNA-binding domain, RBD0.0001386Direct
Troponin coil-coiled subunits0.0008848Direct
Frizzled cysteine-rich domain0.0008848Direct
Cadherin-like0.001044Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.001475Inherited
SAM/Pointed domain0.002373Inherited
Tubulin nucleotide-binding domain-like0.003247Inherited
PDZ domain-like0.00683Inherited
Tubulin C-terminal domain-like0.007611Inherited
Protein kinase-like (PK-like)0.01288Inherited
P-loop containing nucleoside triphosphate hydrolases0.01837Inherited
dsRNA-binding domain-like0.02308Inherited
Cysteine-rich domain0.02639Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.02947Inherited
HLH, helix-loop-helix DNA-binding domain0.03302Inherited
Nicotinic receptor ligand binding domain-like0.05815Inherited
Calponin-homology domain, CH-domain0.06564Inherited
Eukaryotic type KH-domain (KH-domain type I)0.06564Inherited
PH domain-like0.08067Inherited
BAR/IMD domain-like0.09634Inherited
Growth factor receptor domain0.1328Inherited
SMAD/FHA domain0.2623Inherited
EGF/Laminin0.3281Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.000000009173Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.000001913Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0000103Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0008848Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0008848Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.003247Inherited
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.003967Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.006265Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.02947Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.03209Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.474Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00000349Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.0000103Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001937Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0008848Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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