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Worm Phenotype (WP): neuron development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + 2:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|69)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
0:   neuron development variant [WBPhenotype:0000816] <6>(29|28) (30|11|4)
- 1:   synaptic transmission variant [WBPhenotype:0000584] <7>(6|5) (6|2|1)
- 1:   neurite development variant [WBPhenotype:0000944] <5>(6|8) (6|4|3)
- 1:   neuronal outgrowth variant [WBPhenotype:0000572] <4>(20|16) (21|8|4)
- 1:   chemosensory neuron development variant [WBPhenotype:0000878](0|0) (0|0|0)
- 1:   neuron cell body absent misplaced [WBPhenotype:0001333](1|1) (1|0|0)
- 1:   neuronal ion channel clustering defective [WBPhenotype:0001786](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Immunoglobulin0.0000000000161Direct
Fibronectin type III0.0000000201Direct
Sema domain0.00000002709Direct
GTPase activation domain, GAP0.00000008129Direct
Plexin repeat0.000003298Direct
Concanavalin A-like lectins/glucanases0.00006814Direct
Homeodomain-like0.0001373Direct
RNA-binding domain, RBD0.0002278Direct
Troponin coil-coiled subunits0.001058Inherited
Frizzled cysteine-rich domain0.001058Inherited
Cadherin-like0.001245Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.00175Inherited
SAM/Pointed domain0.002798Inherited
Tubulin nucleotide-binding domain-like0.003815Inherited
PDZ domain-like0.007925Inherited
Tubulin C-terminal domain-like0.008833Inherited
Protein kinase-like (PK-like)0.01467Inherited
P-loop containing nucleoside triphosphate hydrolases0.02072Inherited
dsRNA-binding domain-like0.02627Inherited
Cysteine-rich domain0.02993Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.03321Inherited
HLH, helix-loop-helix DNA-binding domain0.03727Inherited
Nicotinic receptor ligand binding domain-like0.06469Inherited
Eukaryotic type KH-domain (KH-domain type I)0.07316Inherited
Calponin-homology domain, CH-domain0.07316Inherited
PH domain-like0.08913Inherited
Growth factor receptor domain0.1453Inherited
SMAD/FHA domain0.2804Inherited
EGF/Laminin0.3471Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Troponin I0Direct
Fibronectin type III0.00000005979Direct
BCR-homology GTPase activation domain (BH-domain)0.0000001198Direct
Sema domain0.000001367Direct
I set domains0.00000194Direct
Plexin repeat0.000007592Direct
Homeodomain0.00002944Direct
Cadherin0.0003036Direct
Frizzled cysteine-rich domain0.001268Inherited
Laminin G-like module0.001603Inherited
Synaptotagmin-like (S variant)0.002855Inherited
Canonical RBD0.003205Inherited
Tandem AAA-ATPase domain0.00429Inherited
Tubulin, GTPase domain0.00491Inherited
Motor proteins0.008712Inherited
Tubulin, C-terminal domain0.01133Inherited
Protein kinases, catalytic subunit0.01576Inherited
Pleckstrin-homology domain (PH domain)0.01742Inherited
FHA domain0.0198Inherited
PDZ domain0.0402Inherited
Double-stranded RNA-binding domain (dsRBD)0.046Inherited
HLH, helix-loop-helix DNA-binding domain0.05372Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06902Inherited
Calponin-homology domain, CH-domain0.08767Inherited
Eukaryotic type KH-domain (KH-domain type I)0.08767Inherited
Nicotinic receptor ligand binding domain-like0.1017Inherited
Growth factor receptor domain0.1317Inherited
G proteins0.2896Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Immunoglobulin0.00000000001271Direct
Fibronectin type III0.00000001604Direct
Sema domain0.00000002163Direct
GTPase activation domain, GAP0.00000006507Direct
Plexin repeat0.000002677Direct
Concanavalin A-like lectins/glucanases0.00005572Direct
Homeodomain-like0.0001126Direct
RNA-binding domain, RBD0.0001872Direct
Frizzled cysteine-rich domain0.0008807Direct
Troponin coil-coiled subunits0.0008807Direct
Cadherin-like0.001038Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.001464Inherited
SAM/Pointed domain0.002359Inherited
Tubulin nucleotide-binding domain-like0.00323Inherited
PDZ domain-like0.006779Inherited
Tubulin C-terminal domain-like0.007575Inherited
Protein kinase-like (PK-like)0.01269Inherited
P-loop containing nucleoside triphosphate hydrolases0.01802Inherited
dsRNA-binding domain-like0.02298Inherited
Cysteine-rich domain0.02626Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.0292Inherited
HLH, helix-loop-helix DNA-binding domain0.03283Inherited
Nicotinic receptor ligand binding domain-like0.05769Inherited
Eukaryotic type KH-domain (KH-domain type I)0.06544Inherited
Calponin-homology domain, CH-domain0.06544Inherited
PH domain-like0.08017Inherited
BAR/IMD domain-like0.09603Inherited
Growth factor receptor domain0.1325Inherited
SMAD/FHA domain0.2618Inherited
EGF/Laminin0.327Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.000000009052Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.000001897Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00001023Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0008807Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0008807Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00323Inherited
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.003951Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.01056Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.0292Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.03192Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.473Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.000003457Direct
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.00001023Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001926Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0008807Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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