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Worm Phenotype (WP): germ cell differentiation variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ 1:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
0:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
- 1:   spermatogenesis variant [WBPhenotype:0000670] <8>(1|1) (1|0|0)
- 1:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
- 1:   no differentiated gametes [WBPhenotype:0000395] <2>(7|9) (7|3|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Zn-finger domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000000006658Direct
Class II aaRS and biotin synthetases0.000007395Direct
Translation proteins SH3-like domain0.00001138Direct
beta-sandwich domain of Sec23/240.00006295Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00009459Direct
Class II aaRS ABD-related0.0001898Direct
F1F0 ATP synthase subunit C0.000281Direct
Ribosomal proteins S24e, L23 and L15e0.000281Direct
S15/NS1 RNA-binding domain0.000281Direct
L30e-like0.000391Direct
Translation proteins0.0004391Direct
SNARE-like0.0004813Direct
Sec1/munc18-like (SM) proteins0.0007614Direct
Translational machinery components0.0007614Direct
ACP-like0.001615Inherited
Cullin homology domain0.001615Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.004836Inherited
Ribosomal protein S5 domain 2-like0.04212Inherited
Nucleic acid-binding proteins0.09891Inherited
CCCH zinc finger0.2823Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.3755Inherited
Sm-like ribonucleoproteins0.3822Inherited
Nucleotidylyl transferase0.3858Inherited
Smc hinge domain0.723Inherited
PAZ domain0.8751Inherited
Protein kinase-like (PK-like)0.9403Inherited
POZ domain0.9576Inherited
Histone-fold1Inherited
"Winged helix" DNA-binding domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
Trunk domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like6.263e-16Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000003349Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000007593Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00004171Direct
Anticodon-binding domain0.00009214Direct
Anticodon-binding domain of Class II aaRS0.00009214Direct
Translational machinery components0.0003192Direct
L30e/L7ae ribosomal proteins0.0004101Direct
F1F0 ATP synthase subunit C0.0004101Direct
Cold shock DNA-binding domain-like0.0005624Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001192Inherited
G proteins0.001336Inherited
Clathrin adaptor core protein0.002347Inherited
Cullin homology domain0.002347Inherited
Elongation factors0.004005Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.007001Inherited
Nitrogenase iron protein-like0.0154Inherited
Pumilio repeat0.07226Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.07226Inherited
Ubiquitin-related0.07226Inherited
RecA protein-like (ATPase-domain)0.1634Inherited
CCCH zinc finger0.3059Inherited
Cyclin0.3059Inherited
BTB/POZ domain0.3686Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.4208Inherited
Proteasome subunits0.5058Inherited
Smc hinge domain0.5273Inherited
Extended AAA-ATPase domain0.75Inherited
Protein kinases, catalytic subunit0.9367Inherited
Nucleosome core histones1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
14-3-3 protein0Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
GroEL apical domain-like0.000000000005254Direct
Class II aaRS and biotin synthetases0.000006016Direct
Translation proteins SH3-like domain0.000009266Direct
beta-sandwich domain of Sec23/240.00005149Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00007751Direct
Class II aaRS ABD-related0.0001559Direct
F1F0 ATP synthase subunit C0.0002313Direct
Ribosomal proteins S24e, L23 and L15e0.0002313Direct
S15/NS1 RNA-binding domain0.0002313Direct
L30e-like0.0003225Direct
Translation proteins0.0003628Direct
SNARE-like0.0003982Direct
Translational machinery components0.0006327Direct
Sec1/munc18-like (SM) proteins0.0006327Direct
Cullin homology domain0.001349Inherited
ACP-like0.001349Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.004107Inherited
Ribosomal protein S5 domain 2-like0.03718Inherited
Nucleic acid-binding proteins0.08929Inherited
CCCH zinc finger0.2638Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.3552Inherited
Sm-like ribonucleoproteins0.3617Inherited
Nucleotidylyl transferase0.3653Inherited
Smc hinge domain0.7026Inherited
PAZ domain0.8591Inherited
Protein kinase-like (PK-like)0.9267Inherited
POZ domain0.9444Inherited
"Winged helix" DNA-binding domain1Inherited
Histone-fold1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 3.517e-16Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00005149Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0000637Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0002313Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.000915Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00131Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.003459Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.004107Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.02364Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.2175Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.004107Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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