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Worm Phenotype (WP): germ cell morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|64)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|54|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|44|15)
0:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|22|8)
- 1:   oocyte morphology variant [WBPhenotype:0001260] <9>(27|30) (27|13|3)
- 1:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
- 1:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <3>(11|8) (11|5|2)
- 1:   sperm morphology variant [WBPhenotype:0000388] <1>(1|0) (1|1|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Sm-like ribonucleoproteins0.000000000008304Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000004543Direct
Actin-like ATPase domain0.00000005779Direct
GroEL equatorial domain-like0.00000008086Direct
GroEL-intermediate domain like0.00000008086Direct
Class II aaRS and biotin synthetases0.000000465Direct
Translation proteins SH3-like domain0.000003296Direct
Ribosomal proteins S24e, L23 and L15e0.00001451Direct
Class II aaRS ABD-related0.00002901Direct
PLC-like phosphodiesterases0.0001059Direct
Annexin0.0001594Direct
RBP11-like subunits of RNA polymerase0.0001594Direct
ADC-like0.0001594Direct
Cdc48 domain 2-like0.0001594Direct
beta-sandwich domain of Sec23/240.0001594Direct
Zn-binding ribosomal proteins0.0002403Direct
dsRNA-binding domain-like0.000326Direct
Translation proteins0.0003851Direct
Activating enzymes of the ubiquitin-like proteins0.0005716Direct
S15/NS1 RNA-binding domain0.0006944Direct
F1F0 ATP synthase subunit C0.0006944Direct
L30e-like0.001156Inherited
Translational machinery components0.001837Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003422Inherited
ACP-like0.003814Inherited
Ribosomal protein S5 domain 2-like0.009558Inherited
RNA-binding domain, RBD0.01071Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01096Inherited
GroEL apical domain-like0.0263Inherited
EF-hand0.03263Inherited
ARM repeat0.03461Inherited
CCCH zinc finger0.06607Inherited
Nucleic acid-binding proteins0.3307Inherited
PDZ domain-like0.5579Inherited
PH domain-like0.85Inherited
Cysteine-rich domain0.9278Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.9473Inherited
SH3-domain0.9874Inherited
Immunoglobulin1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Anticodon-binding domain of Class II aaRS0Direct
Mammalian PLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.0000000002351Direct
Actin/HSP700.000000001719Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001975Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000002926Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000004745Direct
Pumilio repeat0.00002385Direct
RecA protein-like (ATPase-domain)0.0001347Direct
Cdc48 N-terminal domain-like0.0002381Direct
Anticodon-binding domain0.0002381Direct
Cdc48 domain 2-like0.0002381Direct
Annexin0.0002381Direct
Cold shock DNA-binding domain-like0.0005304Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009807Direct
Translational machinery components0.0009807Direct
L30e/L7ae ribosomal proteins0.001034Inherited
F1F0 ATP synthase subunit C0.001034Inherited
Canonical RBD0.007838Inherited
Elongation factors0.01282Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01618Inherited
Group II chaperonin (CCT, TRIC), apical domain0.02154Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02419Inherited
Extended AAA-ATPase domain0.04497Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.05071Inherited
CCCH zinc finger0.05574Inherited
Nitrogenase iron protein-like0.1005Inherited
Laminin-type module0.1005Inherited
G proteins0.1006Inherited
Clathrin adaptor core protein0.1666Inherited
PLC-like (P variant)0.1923Inherited
PDZ domain0.5821Inherited
Pleckstrin-homology domain (PH domain)0.8611Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Sm-like ribonucleoproteins0.000000000006549Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000003633Direct
Actin-like ATPase domain0.00000004622Direct
GroEL equatorial domain-like0.00000006472Direct
GroEL-intermediate domain like0.00000006472Direct
Class II aaRS and biotin synthetases0.0000003743Direct
Translation proteins SH3-like domain0.000002675Direct
Ribosomal proteins S24e, L23 and L15e0.00001181Direct
Class II aaRS ABD-related0.00002367Direct
PLC-like phosphodiesterases0.00008677Direct
Cdc48 domain 2-like0.0001308Direct
beta-sandwich domain of Sec23/240.0001308Direct
Annexin0.0001308Direct
RBP11-like subunits of RNA polymerase0.0001308Direct
ADC-like0.0001308Direct
Zn-binding ribosomal proteins0.0001975Direct
dsRNA-binding domain-like0.0002685Direct
Translation proteins0.0003175Direct
Activating enzymes of the ubiquitin-like proteins0.0004732Direct
F1F0 ATP synthase subunit C0.0005759Direct
S15/NS1 RNA-binding domain0.0005759Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009626Direct
L30e-like0.0009626Direct
Translational machinery components0.001538Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002892Inherited
ACP-like0.003229Inherited
Ribosomal protein S5 domain 2-like0.008211Inherited
RNA-binding domain, RBD0.009225Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00944Inherited
GroEL apical domain-like0.02302Inherited
EF-hand0.02868Inherited
ARM repeat0.03045Inherited
CCCH zinc finger0.05895Inherited
Nucleic acid-binding proteins0.311Inherited
PDZ domain-like0.5361Inherited
PH domain-like0.833Inherited
Cysteine-rich domain0.9138Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.934Inherited
SH3-domain0.9768Inherited
Immunoglobulin1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.000000003315Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000006472Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006472Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001308Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001308Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004732Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0005759Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009626Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.003229Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.004343Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.004343Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00944Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.08955Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9698Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006472Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004732Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009626Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00944Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.6283Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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