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Worm Phenotype (WP): germ cell morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(78|81) (82|45|15)
0:   germ cell morphology variant [WBPhenotype:0000900] <4>(43|41) (45|23|8)
- 1:   oocyte morphology variant [WBPhenotype:0001260] <9>(26|30) (26|13|3)
- 1:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
- 1:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <2>(11|8) (12|5|2)
- 1:   sperm morphology variant [WBPhenotype:0000388] <1>(1|0) (1|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Sm-like ribonucleoproteins0.00000000000673Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000003734Direct
GroEL-intermediate domain like0.00000007238Direct
GroEL equatorial domain-like0.00000007238Direct
Class II aaRS and biotin synthetases0.0000004001Direct
Translation proteins SH3-like domain0.000002968Direct
Ribosomal proteins S24e, L23 and L15e0.00001366Direct
Class II aaRS ABD-related0.00002694Direct
Annexin0.0001528Direct
beta-sandwich domain of Sec23/240.0001528Direct
ADC-like0.0001528Direct
Cdc48 domain 2-like0.0001528Direct
RBP11-like subunits of RNA polymerase0.0001528Direct
PLC-like phosphodiesterases0.0001765Direct
Zn-binding ribosomal proteins0.0002269Direct
Translation proteins0.000346Direct
Actin-like ATPase domain0.0003867Direct
Activating enzymes of the ubiquitin-like proteins0.0005399Direct
F1F0 ATP synthase subunit C0.0006634Direct
S15/NS1 RNA-binding domain0.0006634Direct
L30e-like0.001089Inherited
Translational machinery components0.001761Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003226Inherited
dsRNA-binding domain-like0.003414Inherited
RNA-binding domain, RBD0.009628Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01051Inherited
Ribosomal protein S5 domain 2-like0.01525Inherited
EF-hand0.02141Inherited
GroEL apical domain-like0.02538Inherited
ARM repeat0.05134Inherited
CCCH zinc finger0.06357Inherited
Nucleic acid-binding proteins0.3191Inherited
PDZ domain-like0.5513Inherited
SH3-domain0.7813Inherited
PH domain-like0.8406Inherited
Cysteine-rich domain0.9308Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.9497Inherited
Immunoglobulin1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Mammalian PLC0Direct
Zn-finger domain of Sec23/240Direct
Proteasome subunits0.0000000002167Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001836Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000002796Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000004447Direct
Pumilio repeat0.00005669Direct
RecA protein-like (ATPase-domain)0.0001328Direct
Cdc48 N-terminal domain-like0.0002364Direct
Cdc48 domain 2-like0.0002364Direct
Anticodon-binding domain0.0002364Direct
Annexin0.0002364Direct
Actin/HSP700.0004813Direct
Cold shock DNA-binding domain-like0.0005097Direct
Translational machinery components0.0009641Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009641Direct
F1F0 ATP synthase subunit C0.001023Inherited
L30e/L7ae ribosomal proteins0.001023Inherited
Nitrogenase iron protein-like0.00566Inherited
Canonical RBD0.006848Inherited
Elongation factors0.01258Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.016Inherited
Group II chaperonin (CCT, TRIC), apical domain0.02052Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02394Inherited
G proteins0.04874Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.04989Inherited
CCCH zinc finger0.05311Inherited
Extended AAA-ATPase domain0.09463Inherited
Laminin-type module0.09827Inherited
Clathrin adaptor core protein0.1644Inherited
PLC-like (P variant)0.1878Inherited
PDZ domain0.5756Inherited
Pleckstrin-homology domain (PH domain)0.8604Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Sm-like ribonucleoproteins0.000000000005266Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000002965Direct
GroEL equatorial domain-like0.00000005753Direct
GroEL-intermediate domain like0.00000005753Direct
Class II aaRS and biotin synthetases0.0000003198Direct
Translation proteins SH3-like domain0.000002391Direct
Ribosomal proteins S24e, L23 and L15e0.00001105Direct
Class II aaRS ABD-related0.00002184Direct
RBP11-like subunits of RNA polymerase0.0001246Direct
Cdc48 domain 2-like0.0001246Direct
Annexin0.0001246Direct
ADC-like0.0001246Direct
beta-sandwich domain of Sec23/240.0001246Direct
PLC-like phosphodiesterases0.0001441Direct
Zn-binding ribosomal proteins0.0001855Direct
Translation proteins0.0002835Direct
Actin-like ATPase domain0.0003171Direct
Activating enzymes of the ubiquitin-like proteins0.0004441Direct
S15/NS1 RNA-binding domain0.0005468Direct
F1F0 ATP synthase subunit C0.0005468Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009012Direct
L30e-like0.0009012Direct
Translational machinery components0.001465Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002711Inherited
dsRNA-binding domain-like0.00287Inherited
RNA-binding domain, RBD0.00821Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.008982Inherited
Ribosomal protein S5 domain 2-like0.0131Inherited
EF-hand0.01856Inherited
GroEL apical domain-like0.02208Inherited
ARM repeat0.04537Inherited
CCCH zinc finger0.05651Inherited
Nucleic acid-binding proteins0.2992Inherited
PDZ domain-like0.5287Inherited
SH3-domain0.763Inherited
PH domain-like0.8241Inherited
Cysteine-rich domain0.9177Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.9376Inherited
Protein kinase-like (PK-like)1Inherited
Immunoglobulin1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000005753Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000005753Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001246Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001246Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0001246Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0003171Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004441Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0005468Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009012Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.003064Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.004042Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.004042Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.008982Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.08644Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9774Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000005753Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004441Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009012Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.008982Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.6233Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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