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Worm Phenotype (WP): muscle cell morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(444|532) (446|238|67)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <9>(106|107) (110|55|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(78|81) (82|45|15)
0:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (24|16|6)
- 1:   nonstriated muscle morphology variant [WBPhenotype:0000923] <3>(0|0) (0|0|0)
- 1:   striated muscle morphology variant [WBPhenotype:0000924] <2>(20|23) (21|16|5)
- 1:   muscle cell ultrastructure variant [WBPhenotype:0002131](0|0) (0|0|0)
- 1:   myopodia present [WBPhenotype:0001932](2|4) (2|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Troponin coil-coiled subunits0.0000004438Direct
Calpain large subunit, middle domain (domain III)0.0000004438Direct
Growth factor receptor domain0.000001859Direct
SH2 domain0.000005839Direct
PH domain-like0.00001343Direct
SH3-domain0.00002109Direct
Myosin rod fragments0.00004124Direct
Protein kinase-like (PK-like)0.0001075Direct
Immunoglobulin0.000284Direct
EGF/Laminin0.0003792Direct
Spectrin repeat0.0004102Direct
Voltage-gated potassium channels0.0007911Direct
Second domain of FERM0.001375Inherited
Tropomyosin0.004532Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005681Inherited
DBL homology domain (DH-domain)0.006555Inherited
Calponin-homology domain, CH-domain0.008423Inherited
Fibronectin type III0.02268Inherited
Glutathione synthetase ATP-binding domain-like0.04994Inherited
Cysteine-rich domain0.1248Inherited
L domain-like0.3873Inherited
Actin-like ATPase domain0.4126Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Laminin-type module0.00000003913Direct
Calpain large subunit, middle domain (domain III)0.0000009698Direct
SH2 domain0.000004204Direct
Troponin I0.00001484Direct
SH3-domain0.00001533Direct
Protein kinases, catalytic subunit0.00003521Direct
Calpain large subunit, catalytic domain (domain II)0.00007361Direct
Myosin rod fragments0.00007484Direct
Pleckstrin-homology domain (PH domain)0.0001099Direct
I set domains0.0002499Direct
LIM domain0.0003093Direct
Spectrin repeat0.0003093Direct
Second domain of FERM0.001051Inherited
Growth factor receptor domain0.001253Inherited
Tropomyosin0.003564Inherited
Third domain of FERM0.003564Inherited
DBL homology domain (DH-domain)0.005193Inherited
Calponin-homology domain, CH-domain0.006693Inherited
First domain of FERM0.01189Inherited
EF-hand modules in multidomain proteins0.01189Inherited
Synaptotagmin-like (S variant)0.01509Inherited
Fibronectin type III0.01856Inherited
PLC-like (P variant)0.03796Inherited
Lamin A/C globular tail domain0.04216Inherited
Laminin G-like module0.04216Inherited
Actin/HSP700.3178Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin domains0Direct
Calpain large subunit, middle domain (domain III)0.0000003549Direct
Troponin coil-coiled subunits0.0000003549Direct
Growth factor receptor domain0.000001495Direct
SH2 domain0.000004708Direct
PH domain-like0.00001087Direct
SH3-domain0.00001709Direct
Myosin rod fragments0.00003351Direct
Protein kinase-like (PK-like)0.00008766Direct
Immunoglobulin0.0002326Direct
EGF/Laminin0.0003109Direct
Spectrin repeat0.0003368Direct
Voltage-gated potassium channels0.0006532Direct
Second domain of FERM0.001141Inherited
Tropomyosin0.003823Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004803Inherited
DBL homology domain (DH-domain)0.005552Inherited
Calponin-homology domain, CH-domain0.007169Inherited
Fibronectin type III0.01968Inherited
vWA-like0.02302Inherited
Glutathione synthetase ATP-binding domain-like0.0441Inherited
Cysteine-rich domain0.1132Inherited
L domain-like0.3662Inherited
Actin-like ATPase domain0.3911Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.00000009342Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000007771Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0000202Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0002235Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0002736Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0007798Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001141Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.001141Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.003823Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.003823Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.005976Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.01258Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.01258Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0441Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0441Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.3911Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00009895Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.001141Inherited
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001141Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.003823Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.005173Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.005552Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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