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Worm Phenotype (WP): muscle cell morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|45|15)
0:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
- 1:   nonstriated muscle morphology variant [WBPhenotype:0000923] <3>(0|0) (0|0|0)
- 1:   striated muscle morphology variant [WBPhenotype:0000924] <2>(20|23) (20|16|5)
- 1:   muscle cell ultrastructure variant [WBPhenotype:0002131](0|0) (0|0|0)
- 1:   myopodia present [WBPhenotype:0001932](2|4) (3|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Troponin coil-coiled subunits0.000000494Direct
Calpain large subunit, middle domain (domain III)0.000000494Direct
Growth factor receptor domain0.000002182Direct
SH2 domain0.00000663Direct
PH domain-like0.00001651Direct
SH3-domain0.00002444Direct
Myosin rod fragments0.0000448Direct
Protein kinase-like (PK-like)0.0003193Direct
Immunoglobulin0.0003202Direct
EGF/Laminin0.0004185Direct
Spectrin repeat0.0004331Direct
Voltage-gated potassium channels0.0009429Direct
Second domain of FERM0.001438Inherited
Tropomyosin0.004691Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.006187Inherited
DBL homology domain (DH-domain)0.00683Inherited
Calponin-homology domain, CH-domain0.009057Inherited
Fibronectin type III0.02427Inherited
Glutathione synthetase ATP-binding domain-like0.05124Inherited
Cysteine-rich domain0.1298Inherited
L domain-like0.3203Inherited
Actin-like ATPase domain0.3525Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Laminin-type module0.00000004272Direct
Calpain large subunit, middle domain (domain III)0.000001056Direct
SH2 domain0.000005267Direct
Troponin I0.00001554Direct
SH3-domain0.00001971Direct
Calpain large subunit, catalytic domain (domain II)0.00007966Direct
Myosin rod fragments0.00007972Direct
Pleckstrin-homology domain (PH domain)0.000133Direct
Protein kinases, catalytic subunit0.0001349Direct
I set domains0.0002868Direct
LIM domain0.0003404Direct
Spectrin repeat0.0003404Direct
Second domain of FERM0.001141Inherited
Growth factor receptor domain0.001331Inherited
Third domain of FERM0.003797Inherited
Tropomyosin0.003797Inherited
DBL homology domain (DH-domain)0.005598Inherited
Calponin-homology domain, CH-domain0.007586Inherited
First domain of FERM0.01246Inherited
EF-hand modules in multidomain proteins0.01246Inherited
Synaptotagmin-like (S variant)0.01598Inherited
Fibronectin type III0.02088Inherited
PLC-like (P variant)0.04019Inherited
Lamin A/C globular tail domain0.04418Inherited
Laminin G-like module0.04418Inherited
Actin/HSP700.2649Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin domains0Direct
Troponin coil-coiled subunits0.000000398Direct
Calpain large subunit, middle domain (domain III)0.000000398Direct
Growth factor receptor domain0.000001769Direct
SH2 domain0.000005391Direct
PH domain-like0.00001345Direct
SH3-domain0.00001994Direct
Myosin rod fragments0.00003661Direct
Protein kinase-like (PK-like)0.0002631Direct
Immunoglobulin0.0002638Direct
EGF/Laminin0.0003456Direct
Spectrin repeat0.0003577Direct
Voltage-gated potassium channels0.0007845Direct
Second domain of FERM0.001201Inherited
Tropomyosin0.003982Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005272Inherited
DBL homology domain (DH-domain)0.005827Inherited
Calponin-homology domain, CH-domain0.007774Inherited
Fibronectin type III0.02121Inherited
Glutathione synthetase ATP-binding domain-like0.04544Inherited
Cysteine-rich domain0.118Inherited
L domain-like0.3008Inherited
Actin-like ATPase domain0.3324Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0000001049Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000008327Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0000223Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0002387Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0002979Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0008605Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.001201Inherited
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001201Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.003982Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.003982Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.006319Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.01299Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.01299Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.04544Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.04544Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.3324Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0001059Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001201Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.001201Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.003982Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.005552Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.005827Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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