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Worm Phenotype (WP): hermaphrodite physiology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ 1:   sexually dimorphic physiology variant [WBPhenotype:0000889] <2>(25|22) (26|11|2)
0:   hermaphrodite physiology variant [WBPhenotype:0000929] <5>(22|21) (23|11|2)
- 1:   oocyte physiology variant [WBPhenotype:0001424] <3>(15|15) (16|7|1)
- 1:   spermatheca physiology variant [WBPhenotype:0000978] <2>(0|0) (0|0|0)
- 1:   somatic sheath physiology variant [WBPhenotype:0001198] <1>(4|3) (4|3|1)
- 1:   vulval muscle physiology variant [WBPhenotype:0001075] <1>(0|0) (0|0|0)
- 1:   egg laying circuit variant [WBPhenotype:0001816](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.00000003837Direct
GroEL-intermediate domain like0.0000001616Direct
GroEL equatorial domain-like0.0000001616Direct
Nucleic acid-binding proteins0.0000002926Direct
GroEL apical domain-like0.0000005041Direct
Class II aaRS and biotin synthetases0.000001354Direct
F1F0 ATP synthase subunit C0.000001627Direct
ValRS/IleRS/LeuRS editing domain0.000001627Direct
PLC-like phosphodiesterases0.000005922Direct
Sm-like ribonucleoproteins0.00000666Direct
Actin-like ATPase domain0.000008947Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.0000281Direct
Translation proteins0.000108Direct
CAD & PB1 domains0.000128Direct
t-snare proteins0.0001508Direct
Myosin rod fragments0.0001508Direct
WD40 repeat-like0.0001765Direct
PH domain-like0.0002274Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0004788Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.09832Inherited
EF-hand0.1623Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
Mammalian PLC0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000000954Direct
Actin/HSP700.0000002484Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000399Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000001452Direct
ValRS/IleRS/LeuRS editing domain0.00000288Direct
F1F0 ATP synthase subunit C0.00000288Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00001414Direct
Pumilio repeat0.00002973Direct
Anticodon-binding domain of Class II aaRS0.0000421Direct
PLC-like (P variant)0.00006073Direct
Armadillo repeat0.0001129Direct
G proteins0.0001212Direct
Myosin rod fragments0.0002607Direct
t-snare proteins0.0002607Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000483Direct
Cold shock DNA-binding domain-like0.0009977Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.001468Inherited
Pleckstrin-homology domain (PH domain)0.01416Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.0000000307Direct
GroEL equatorial domain-like0.0000001296Direct
GroEL-intermediate domain like0.0000001296Direct
Nucleic acid-binding proteins0.0000002353Direct
GroEL apical domain-like0.0000004063Direct
Class II aaRS and biotin synthetases0.000001095Direct
F1F0 ATP synthase subunit C0.000001317Direct
ValRS/IleRS/LeuRS editing domain0.000001317Direct
PLC-like phosphodiesterases0.000004814Direct
Sm-like ribonucleoproteins0.000005416Direct
Actin-like ATPase domain0.000007277Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.00002293Direct
Translation proteins0.00008852Direct
CAD & PB1 domains0.000105Direct
t-snare proteins0.0001238Direct
Myosin rod fragments0.0001238Direct
WD40 repeat-like0.0001449Direct
PH domain-like0.0001869Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003961Direct
Zinc beta-ribbon0.001171Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.08873Inherited
EF-hand0.1485Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000001296Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000001296Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.000001317Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.000001458Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00002293Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00002293Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0000267Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0006296Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000001296Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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