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Worm Phenotype (WP): developmental morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Variant [WBPhenotype:0000886] <4>
+ 1:   morphology variant [WBPhenotype:0000520] <9>(441|523) (441|229|64)
0:   developmental morphology variant [WBPhenotype:0000934] <17>(67|65) (70|22|11)
- 1:   dauer body morphology variant [WBPhenotype:0001545] <8>(0|0) (0|0|0)
- 1:   tail morphology variant [WBPhenotype:0000073] <8>(13|12) (13|3|0)
- 1:   body size variant [WBPhenotype:0000231] <6>(33|37) (34|10|7)
- 1:   head morphology variant [WBPhenotype:0000071] <6>(2|0) (2|0|0)
- 1:   egg morphology variant [WBPhenotype:0000037] <4>(3|3) (3|3|0)
- 1:   pigmentation variant [WBPhenotype:0000521] <4>(12|5) (13|3|1)
- 1:   body axis morphology variant [WBPhenotype:0000581] <2>(3|3) (3|1|0)
- 1:   sexually dimorphic morphology variant [WBPhenotype:0001023] <2>(13|13) (13|4|1)
- 1:   body constriction [WBPhenotype:0000212] <1>(0|0) (0|0|0)
- 1:   body vacuole [WBPhenotype:0001395] <1>(3|3) (3|0|0)
- 1:   larval body morphology variant [WBPhenotype:0000035] <1>(1|1) (1|0|0)
- 1:   body protrusions [WBPhenotype:0000453](0|0) (0|0|0)
- 1:   body twisted [WBPhenotype:0001295](0|0) (0|0|0)
- 1:   lumpy [WBPhenotype:0000406](0|0) (0|0|0)
- 1:   maternal effect morphology variant [WBPhenotype:0002458](0|0) (0|0|0)
- 1:   organism morphology variable [WBPhenotype:0000409](1|1) (1|0|0)
- 1:   pseudocoelom morphology variant [WBPhenotype:0000949](2|0) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Multidrug efflux transporter AcrB transmembrane domain0Direct
Skp1 dimerisation domain-like8.891e-16Direct
Transducin (alpha subunit), insertion domain0.000000000000005765Direct
Homeodomain-like0.000000001261Direct
ARM repeat0.0000000729Direct
DBL homology domain (DH-domain)0.0000001229Direct
PH domain-like0.0000005638Direct
Hedgehog/intein (Hint) domain0.0000006385Direct
Insulin-like0.000002531Direct
Lamin A/C globular tail domain0.000002981Direct
SMAD MH1 domain0.00002467Direct
Sema domain0.00002467Direct
SNF-like0.00003323Direct
Growth factor receptor domain0.00004365Direct
Intermediate filament protein, coiled coil region0.00005226Direct
SNARE-like0.00006703Direct
P-loop containing nucleoside triphosphate hydrolases0.00007745Direct
Zn-binding ribosomal proteins0.0001212Direct
Subtilisin-like0.0001659Direct
Cyclin-like0.0005577Direct
"Winged helix" DNA-binding domain0.000591Direct
Spectrin repeat0.0006003Direct
lambda repressor-like DNA-binding domains0.0006003Direct
Neurotransmitter-gated ion-channel transmembrane pore0.0006383Direct
Translation proteins0.000766Direct
HLH, helix-loop-helix DNA-binding domain0.0008001Direct
Nucleotide-binding domain0.0008148Direct
Plexin repeat0.0008148Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0008148Direct
LuxS/MPP-like metallohydrolase0.001018Inherited
S-adenosylmethionine synthetase0.001083Inherited
Transducin (heterotrimeric G protein), gamma chain0.001083Inherited
Arginase/deacetylase0.001206Inherited
GroEL equatorial domain-like0.001206Inherited
GroEL-intermediate domain like0.001206Inherited
Immunoglobulin0.001454Inherited
RNA-binding domain, RBD0.001674Inherited
Multidrug resistance efflux transporter EmrE0.001802Inherited
GroEL apical domain-like0.002542Inherited
Nicotinic receptor ligand binding domain-like0.004122Inherited
TPR-like0.004178Inherited
Tim10-like0.00439Inherited
Frizzled cysteine-rich domain0.00439Inherited
Troponin coil-coiled subunits0.005264Inherited
PYP-like sensor domain (PAS domain)0.005264Inherited
PreATP-grasp domain0.00996Inherited
Thiamin diphosphate-binding fold (THDP-binding)0.00996Inherited
Heme-dependent peroxidases0.01254Inherited
Sm-like ribonucleoproteins0.01841Inherited
cAMP-binding domain-like0.01863Inherited
beta-beta-alpha zinc fingers0.01972Inherited
SMAD/FHA domain0.02253Inherited
Ankyrin repeat0.03045Inherited
FYVE/PHD zinc finger0.05727Inherited
ClpP/crotonase0.0619Inherited
Cysteine-rich domain0.0665Inherited
Lipocalins0.1008Inherited
Cysteine-rich DNA binding domain, (DM domain)0.1047Inherited
Protease propeptides/inhibitors0.1047Inherited
Glutathione synthetase ATP-binding domain-like0.1373Inherited
Histone-fold0.2117Inherited
Voltage-gated potassium channels0.2477Inherited
Protein kinase-like (PK-like)0.4468Inherited
POZ domain0.7303Inherited
Thioredoxin-like0.9492Inherited
GST C-terminal domain-like1Inherited
C-type lectin-like1Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RhoGDI-like0Direct
Multidrug efflux transporter AcrB transmembrane domain0Direct
D-aminoacid oxidase, N-terminal domain0Direct
POU-specific domain0Direct
Branched-chain alpha-keto acid dehydrogenase PP module0Direct
MIF4G domain-like0Direct
Sema domain0Direct
Skp1 dimerisation domain-like0.000000000000001248Direct
Transducin (alpha subunit), insertion domain0.000000000000186Direct
Homeodomain0.000000002068Direct
G proteins0.0000005627Direct
DBL homology domain (DH-domain)0.0000009323Direct
Hedgehog C-terminal (Hog) autoprocessing domain0.000002555Direct
Pleckstrin-homology domain (PH domain)0.000002659Direct
Clathrin coat assembly domain0.00001016Direct
Insulin-like0.00002014Direct
Laminin-type module0.00005749Direct
SMAD MH1 domain0.00005749Direct
SNF-like0.00006238Direct
SMAD domain0.00006627Direct
I set domains0.000156Direct
Intermediate filament protein, coiled coil region0.0001629Direct
Lamin A/C globular tail domain0.0002443Direct
D-aminoacid oxidase-like0.0003207Direct
Subtilases0.0003207Direct
Clathrin adaptor core protein0.0003259Direct
Growth factor receptor domain0.000491Direct
Cyclin0.0005168Direct
Histone deacetylase, HDAC0.001064Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.001064Inherited
PDI-like0.001551Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001551Inherited
Plexin repeat0.001551Inherited
Proprotein convertase P-domain0.00176Inherited
Transducin (heterotrimeric G protein), gamma chain0.00176Inherited
S-adenosylmethionine synthetase0.00176Inherited
Glycosyl transferases group 10.00176Inherited
Troponin I0.00176Inherited
MPP-like0.002573Inherited
Group II chaperonin (CCT, TRIC), apical domain0.002625Inherited
Forkhead DNA-binding domain0.004173Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00541Inherited
Spectrin repeat0.005429Inherited
BTB/POZ domain0.005448Inherited
Frizzled cysteine-rich domain0.007101Inherited
Tim10/DDP0.007101Inherited
Transforming growth factor (TGF)-beta0.007101Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.008059Inherited
Canonical RBD0.008752Inherited
Nicotinic receptor ligand binding domain-like0.01023Inherited
CUT domain0.01743Inherited
Myeloperoxidase-like0.02532Inherited
cAMP-binding domain0.02532Inherited
Pumilio repeat0.03017Inherited
Classic zinc finger, C2H20.03778Inherited
Tetratricopeptide repeat (TPR)0.04346Inherited
Ankyrin repeat0.1216Inherited
Cysteine-rich DNA binding domain, (DM domain)0.1569Inherited
Synaptotagmin-like (S variant)0.1843Inherited
Fatty acid binding protein-like0.1999Inherited
Nucleosome core histones0.4494Inherited
Voltage-gated potassium channels0.478Inherited
Rhodopsin-like0.5824Inherited
Protein kinases, catalytic subunit0.7802Inherited
C-type lectin domain1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Multidrug efflux transporter AcrB transmembrane domain0Direct
Skp1 dimerisation domain-like7.012e-16Direct
Transducin (alpha subunit), insertion domain0.000000000000004549Direct
Homeodomain-like0.000000001008Direct
ARM repeat0.00000005879Direct
DBL homology domain (DH-domain)0.00000009919Direct
PH domain-like0.0000004574Direct
Hedgehog/intein (Hint) domain0.0000005186Direct
Insulin-like0.000002066Direct
Lamin A/C globular tail domain0.000002436Direct
Sema domain0.00002024Direct
SMAD MH1 domain0.00002024Direct
SNF-like0.00002731Direct
Growth factor receptor domain0.00003592Direct
Intermediate filament protein, coiled coil region0.00004304Direct
SNARE-like0.00005521Direct
P-loop containing nucleoside triphosphate hydrolases0.00006385Direct
Zn-binding ribosomal proteins0.0001001Direct
Subtilisin-like0.000137Direct
Cyclin-like0.0004642Direct
"Winged helix" DNA-binding domain0.0004922Direct
lambda repressor-like DNA-binding domains0.0005002Direct
Spectrin repeat0.0005002Direct
Neurotransmitter-gated ion-channel transmembrane pore0.0005321Direct
Translation proteins0.0006405Direct
HLH, helix-loop-helix DNA-binding domain0.0006693Direct
Nucleotide-binding domain0.0006817Direct
Plexin repeat0.0006817Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0006817Direct
LuxS/MPP-like metallohydrolase0.0008534Direct
S-adenosylmethionine synthetase0.0009073Direct
Transducin (heterotrimeric G protein), gamma chain0.0009073Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.0009073Direct
Arginase/deacetylase0.001011Inherited
GroEL equatorial domain-like0.001011Inherited
GroEL-intermediate domain like0.001011Inherited
Immunoglobulin0.001222Inherited
RNA-binding domain, RBD0.001408Inherited
Multidrug resistance efflux transporter EmrE0.001516Inherited
EGF/Laminin0.00212Inherited
GroEL apical domain-like0.002149Inherited
Nicotinic receptor ligand binding domain-like0.003503Inherited
TPR-like0.003551Inherited
Frizzled cysteine-rich domain0.003733Inherited
Tim10-like0.003733Inherited
Troponin coil-coiled subunits0.004485Inherited
PYP-like sensor domain (PAS domain)0.004485Inherited
PreATP-grasp domain0.008574Inherited
Thiamin diphosphate-binding fold (THDP-binding)0.008574Inherited
Heme-dependent peroxidases0.01082Inherited
Sm-like ribonucleoproteins0.01598Inherited
cAMP-binding domain-like0.01618Inherited
beta-beta-alpha zinc fingers0.01715Inherited
SMAD/FHA domain0.01966Inherited
Ankyrin repeat0.02673Inherited
Translation proteins SH3-like domain0.03003Inherited
FYVE/PHD zinc finger0.05092Inherited
ClpP/crotonase0.05515Inherited
Cysteine-rich domain0.0594Inherited
Lipocalins0.09098Inherited
Protease propeptides/inhibitors0.09466Inherited
Cysteine-rich DNA binding domain, (DM domain)0.09466Inherited
Glutathione synthetase ATP-binding domain-like0.1253Inherited
Histone-fold0.1955Inherited
Voltage-gated potassium channels0.2301Inherited
Protein kinase-like (PK-like)0.4254Inherited
POZ domain0.7098Inherited
Thioredoxin-like0.9358Inherited
GST C-terminal domain-like1Inherited
C-type lectin-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51971,54373
  • 51971 - Nucleotide-binding domain
  • 54373 - FAD-linked reductases, C-terminal domain
  • 0Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000000000000004549Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.00000007054Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000004653Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.000004681Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0002141Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.0005321Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0.0008534Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.0009073Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.0009073Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0009073Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.0009073Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001011Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.001011Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.001516Inherited
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.002001Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.002458Inherited
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.01082Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.01934Inherited
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0006405Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0006817Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0008894Direct
    52540,52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0009073Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.0009073Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.001011Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.002149Inherited
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.004007Inherited
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.02284Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.2091Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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