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Worm Phenotype (WP): pattern of transgene expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <5>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(354|423) (357|200|60)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(343|412) (348|198|59)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(167|178) (172|81|24)
+ + 2:   gene expression variant [WBPhenotype:0000717] <10>(121|132) (128|62|19)
+ 1:   transgene expression variant [WBPhenotype:0000306] <3>(83|93) (89|41|13)
0:   pattern of transgene expression variant [WBPhenotype:0000961] <2>(47|56) (51|26|11)
- 1:   ectopic expression transgene [WBPhenotype:0001276](6|5) (6|1|0)
- 1:   transgene subcellular localization variant [WBPhenotype:0000679](29|38) (32|20|8)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0Direct
F1F0 ATP synthase subunit C0Direct
Helical domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0Direct
HSP90 C-terminal domain0Direct
JAB1/MPN domain0Direct
Ribosomal protein L10-like0Direct
Clathrin adaptor appendage domain0Direct
Cu,Zn superoxide dismutase-like0Direct
MIR domain0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
RING/U-box0.00000000000627Direct
SNARE-like0.00000001217Direct
Cysteine proteinases0.00000007747Direct
GroEL apical domain-like0.0000001643Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000008711Direct
Hect, E3 ligase catalytic domain0.0000008711Direct
Cyclophilin-like0.000001111Direct
Sm-like ribonucleoproteins0.000003251Direct
P-loop containing nucleoside triphosphate hydrolases0.00006445Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001238Direct
FKBP-like0.0001312Direct
Activating enzymes of the ubiquitin-like proteins0.0001516Direct
UBC-like0.0004345Direct
L30e-like0.0005388Direct
Chaperone J-domain0.0006011Direct
HSP20-like chaperones0.004109Inherited
Tubulin C-terminal domain-like0.007747Inherited
Acid proteases0.007747Inherited
Tubulin nucleotide-binding domain-like0.01058Inherited
B-box zinc-binding domain0.02684Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.06731Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1646Inherited
Chromo domain-like0.2436Inherited
ENTH/VHS domain0.3387Inherited
FYVE/PHD zinc finger0.5845Inherited
CCCH zinc finger1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
Homeodomain-like1Inherited
p53-like transcription factors1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Clathrin coat assembly domain0Direct
Trunk domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Brix domain0Direct
Helical domain of Sec23/240Direct
F1F0 ATP synthase subunit C0Direct
Quinoprotein alcohol dehydrogenase-like0Direct
14-3-3 protein0Direct
Hsp90 middle domain0Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PDI-like0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
HSP90 C-terminal domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
MIR domain0Direct
L30e/L7ae ribosomal proteins0Direct
Cu,Zn superoxide dismutase-like0Direct
Zn-finger domain of Sec23/240Direct
UBC-related0.0000000000006176Direct
Ubiquitin carboxyl-terminal hydrolase, UCH0.0000000001987Direct
Pepsin-like0.0000000002486Direct
Papain-like0.000000002618Direct
RING finger domain, C3HC40.000000003043Direct
Hect, E3 ligase catalytic domain0.000003022Direct
Group II chaperonin (CCT, TRIC), apical domain0.000003022Direct
Cyclophilin (peptidylprolyl isomerase)0.000006591Direct
Translational machinery components0.00001342Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00001342Direct
Clathrin adaptor core protein0.0000592Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00009055Direct
Extended PAW domain0.0001405Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0002586Direct
Armadillo repeat0.0003079Direct
FKBP immunophilin/proline isomerase0.0003579Direct
Chaperone J-domain0.0004088Direct
Nucleosome core histones0.0005934Direct
Ubiquitin activating enzymes (UBA)0.001109Inherited
Tubulin, C-terminal domain0.005744Inherited
Tubulin, GTPase domain0.00795Inherited
Calmodulin-like0.01754Inherited
B-box zinc-binding domain0.02102Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.05509Inherited
HSP200.1037Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.142Inherited
RecA protein-like (ATPase-domain)0.1941Inherited
N-acetyl transferase, NAT0.2248Inherited
PHD domain0.7079Inherited
CCCH zinc finger0.9913Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
Cu,Zn superoxide dismutase-like0Direct
MIR domain0Direct
Zn-finger domain of Sec23/240Direct
Class II aaRS ABD-related0Direct
Helical domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
Clathrin adaptor appendage domain0Direct
Ribosomal protein L10-like0Direct
F1F0 ATP synthase subunit C0Direct
JAB1/MPN domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
HSP90 C-terminal domain0Direct
RING/U-box0.000000000004906Direct
SNARE-like0.000000009634Direct
Cysteine proteinases0.00000006159Direct
GroEL apical domain-like0.000000131Direct
Hect, E3 ligase catalytic domain0.0000006985Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000006985Direct
Cyclophilin-like0.0000008921Direct
Sm-like ribonucleoproteins0.000002621Direct
P-loop containing nucleoside triphosphate hydrolases0.00005242Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000101Direct
FKBP-like0.0001071Direct
Activating enzymes of the ubiquitin-like proteins0.0001236Direct
UBC-like0.0003569Direct
L30e-like0.0004432Direct
Chaperone J-domain0.0004945Direct
ARM repeat0.0008331Direct
Lipovitellin-phosvitin complex, superhelical domain0.002428Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.002428Inherited
HSP20-like chaperones0.003462Inherited
Tubulin C-terminal domain-like0.006582Inherited
Acid proteases0.006582Inherited
Tubulin nucleotide-binding domain-like0.009038Inherited
B-box zinc-binding domain0.0234Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.05994Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1503Inherited
Chromo domain-like0.2257Inherited
Sec1/munc18-like (SM) proteins0.2739Inherited
ENTH/VHS domain0.3185Inherited
FYVE/PHD zinc finger0.5619Inherited
CCCH zinc finger0.9958Inherited
p53-like transcription factors1Inherited
Homeodomain-like1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54495,46934
  • 54495 - UBC-like
  • 46934 - UBA-like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000006985Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.00002065Direct
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0002114Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.001603Inherited
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.002428Inherited
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.002428Inherited
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0.002428Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.009038Inherited
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.08152Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1503Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.8153Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000006985Direct
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0003153Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0004432Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.002428Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1503Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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