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Worm Phenotype (WP): pattern of transgene expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|57)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|56)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   transgene expression variant [WBPhenotype:0000306] <3>(82|99) (85|43|14)
0:   pattern of transgene expression variant [WBPhenotype:0000961] <2>(49|61) (49|29|12)
- 1:   ectopic expression transgene [WBPhenotype:0001276](4|4) (4|1|0)
- 1:   transgene subcellular localization variant [WBPhenotype:0000679](30|44) (30|23|9)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
JAB1/MPN domain0Direct
Cu,Zn superoxide dismutase-like0Direct
MIR domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
Class II aaRS ABD-related0Direct
FF domain0Direct
Zn-finger domain of Sec23/240Direct
F1F0 ATP synthase subunit C0Direct
HSP90 C-terminal domain0Direct
GroEL equatorial domain-like0Direct
Clathrin adaptor appendage domain0Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
Ribosomal protein L10-like0Direct
Chromo domain-like0.00000000000002949Direct
RING/U-box0.00000000004755Direct
SET domain0.0000000001878Direct
SNARE-like0.00000002779Direct
GroEL apical domain-like0.0000003108Direct
Cysteine proteinases0.0000003601Direct
Hect, E3 ligase catalytic domain0.000001536Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000001536Direct
Cyclophilin-like0.000002413Direct
Sm-like ribonucleoproteins0.000006936Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001782Direct
FKBP-like0.0002091Direct
Activating enzymes of the ubiquitin-like proteins0.0002291Direct
P-loop containing nucleoside triphosphate hydrolases0.0002405Direct
Tudor/PWWP/MBT0.000292Direct
UBC-like0.0006657Direct
L30e-like0.0008046Direct
Chaperone J-domain0.0009049Direct
HIT/MYND zinc finger-like0.0009474Direct
HSP20-like chaperones0.005554Inherited
Tubulin C-terminal domain-like0.01009Inherited
Acid proteases0.01355Inherited
Tubulin nucleotide-binding domain-like0.01355Inherited
B-box zinc-binding domain0.03276Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.07808Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1816Inherited
CCCH zinc finger0.9254Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
p53-like transcription factors1Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Trunk domain of Sec23/240Direct
Integrin domains0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Hsp90 middle domain0Direct
Helical domain of Sec23/240Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
HSP90 C-terminal domain0Direct
beta-sandwich domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
L30e/L7ae ribosomal proteins0Direct
Cu,Zn superoxide dismutase-like0Direct
F1F0 ATP synthase subunit C0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin coat assembly domain0Direct
PDI-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Chromo domain0Direct
FF domain0Direct
14-3-3 protein0Direct
Quinoprotein alcohol dehydrogenase-like0Direct
Brix domain0Direct
MIR domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
UBC-related0.000000000001931Direct
Forkhead DNA-binding domain0.0000000001738Direct
Pepsin-like0.000000002285Direct
Papain-like0.000000006991Direct
RING finger domain, C3HC40.00000001018Direct
Ubiquitin carboxyl-terminal hydrolase, UCH0.00000002561Direct
Hect, E3 ligase catalytic domain0.000004593Direct
Group II chaperonin (CCT, TRIC), apical domain0.000004593Direct
Histone lysine methyltransferases0.00001157Direct
Cyclophilin (peptidylprolyl isomerase)0.00001157Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00001935Direct
Translational machinery components0.00001935Direct
Clathrin adaptor core protein0.00008116Direct
Extended PAW domain0.0001198Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001383Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0003364Direct
Armadillo repeat0.0004472Direct
FKBP immunophilin/proline isomerase0.0005016Direct
Chaperone J-domain0.0005645Direct
Nucleosome core histones0.000965Direct
Ubiquitin activating enzymes (UBA)0.00138Inherited
Adenain-like0.00138Inherited
Tubulin, C-terminal domain0.00707Inherited
Tubulin, GTPase domain0.009671Inherited
B-box zinc-binding domain0.02465Inherited
PHD domain0.03691Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.06193Inherited
HSP200.1134Inherited
N-acetyl transferase, NAT0.1182Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.153Inherited
RecA protein-like (ATPase-domain)0.2063Inherited
CCCH zinc finger0.8901Inherited
Homeodomain1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
GroEL equatorial domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Class II aaRS ABD-related0Direct
FF domain0Direct
F1F0 ATP synthase subunit C0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Cu,Zn superoxide dismutase-like0Direct
MIR domain0Direct
HSP90 C-terminal domain0Direct
Clathrin adaptor appendage domain0Direct
Ribosomal protein L10-like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
JAB1/MPN domain0Direct
GroEL-intermediate domain like0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
Chromo domain-like0.00000000000002312Direct
RING/U-box0.00000000003756Direct
SET domain0.0000000001487Direct
SNARE-like0.0000000222Direct
GroEL apical domain-like0.0000002499Direct
Cysteine proteinases0.0000002896Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000001243Direct
Hect, E3 ligase catalytic domain0.000001243Direct
Cyclophilin-like0.000001954Direct
Sm-like ribonucleoproteins0.000005638Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001463Direct
FKBP-like0.0001718Direct
Activating enzymes of the ubiquitin-like proteins0.0001883Direct
P-loop containing nucleoside triphosphate hydrolases0.0001977Direct
Tudor/PWWP/MBT0.0002404Direct
UBC-like0.0005518Direct
L30e-like0.0006689Direct
Chaperone J-domain0.0007525Direct
HIT/MYND zinc finger-like0.000788Direct
HSP20-like chaperones0.004724Inherited
Tubulin C-terminal domain-like0.008676Inherited
Tubulin nucleotide-binding domain-like0.01171Inherited
Acid proteases0.01171Inherited
B-box zinc-binding domain0.0288Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.06999Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1668Inherited
CCCH zinc finger0.9111Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
p53-like transcription factors1Inherited
Homeodomain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    57903,82199
  • 57903 - FYVE/PHD zinc finger
  • 82199 - SET domain
  • 0Direct
    144232,82199
  • 144232 - HIT/MYND zinc finger-like
  • 82199 - SET domain
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81698,81698
  • 81698 - FF domain
  • 81698 - FF domain
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    57903,51197
  • 57903 - FYVE/PHD zinc finger
  • 51197 - Clavaminate synthase-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    54495,46934
  • 54495 - UBC-like
  • 46934 - UBA-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000001243Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.00004472Direct
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0003524Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.002478Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.01171Inherited
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.09361Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1668Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.578Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000001243Direct
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0004995Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0006689Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1668Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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