SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): muscle cell physiology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <26>(152|155) (154|66|17)
+ 1:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|155) (154|66|17)
0:   muscle cell physiology variant [WBPhenotype:0000990] <7>(18|20) (19|12|4)
- 1:   muscle cell activity variant [WBPhenotype:0001735] <1>(1|1) (1|0|0)
- 1:   pharyngeal muscle physiology variant [WBPhenotype:0001191] <1>(0|0) (0|0|0)
- 1:   somatic sheath physiology variant [WBPhenotype:0001198] <1>(4|3) (4|3|1)
- 1:   vulval muscle physiology variant [WBPhenotype:0001075] <1>(0|0) (0|0|0)
- 1:   body wall muscle physiology variant [WBPhenotype:0001292](0|0) (0|0|0)
- 1:   muscle cell attachment variant [WBPhenotype:0000716](7|9) (8|8|2)
- 1:   muscle membrane potential variant [WBPhenotype:0002166](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
PH domain-like0.0000000000008421Direct
SH2 domain0.000000000001436Direct
SH3-domain0.00000000006886Direct
PLC-like phosphodiesterases0.000000005679Direct
Second domain of FERM0.000002688Direct
EF-hand0.000005694Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000253Direct
Ubiquitin-like0.00009844Direct
Protein kinase-like (PK-like)0.0001226Direct
Spectrin repeat0.0002402Direct
Calponin-homology domain, CH-domain0.0002577Direct
Growth factor receptor domain0.0003905Direct
GTPase activation domain, GAP0.0006262Direct
Cysteine-rich domain0.002362Inherited
Voltage-gated potassium channels0.002581Inherited
(Phosphotyrosine protein) phosphatases II0.002855Inherited
DBL homology domain (DH-domain)0.008785Inherited
Actin-like ATPase domain0.02381Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Mammalian PLC0Direct
SH2 domain0.00000000003176Direct
SH3-domain0.0000000001339Direct
EF-hand modules in multidomain proteins0.00000001482Direct
Pleckstrin-homology domain (PH domain)0.00000009162Direct
LIM domain0.0000004585Direct
PLC-like (P variant)0.000001061Direct
Second domain of FERM0.000002914Direct
Third domain of FERM0.000003195Direct
First domain of FERM0.000008917Direct
Growth factor receptor domain0.0001022Direct
Spectrin repeat0.0001022Direct
Protein kinases, catalytic subunit0.0001598Direct
Calponin-homology domain, CH-domain0.0002947Direct
BCR-homology GTPase activation domain (BH-domain)0.000932Direct
Phosphotyrosine-binding domain (PTB)0.000932Direct
I set domains0.008893Inherited
DBL homology domain (DH-domain)0.008893Inherited
Actin/HSP700.01644Inherited
Voltage-gated potassium channels0.01772Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PH domain-like0.000000000000657Direct
SH2 domain0.000000000001121Direct
SH3-domain0.00000000005404Direct
PLC-like phosphodiesterases0.000000004492Direct
Second domain of FERM0.000002165Direct
EF-hand0.000004591Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00002051Direct
Ubiquitin-like0.00008025Direct
Protein kinase-like (PK-like)0.00009997Direct
Spectrin repeat0.0001964Direct
Calponin-homology domain, CH-domain0.000211Direct
Growth factor receptor domain0.0003203Direct
GTPase activation domain, GAP0.0005155Direct
Cysteine-rich domain0.001975Inherited
Voltage-gated potassium channels0.002161Inherited
(Phosphotyrosine protein) phosphatases II0.002392Inherited
DBL homology domain (DH-domain)0.007484Inherited
BAR/IMD domain-like0.01999Inherited
Actin-like ATPase domain0.02068Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000002126Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0000002694Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0000003382Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.000005107Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.00006274Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.00006274Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0007617Direct
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.001816Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01673Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000002421Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00000466Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0007617Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)