SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): muscle cell physiology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <5>
+ + 2:   physiology variant [WBPhenotype:0000519] <6>(495|573) (496|248|69)
+ 1:   cell physiology variant [WBPhenotype:0000536] <27>(145|146) (146|64|18)
0:   muscle cell physiology variant [WBPhenotype:0000990] <3>(16|16) (17|9|3)
- 1:   muscle cell activity variant [WBPhenotype:0001735] <1>(1|1) (1|0|0)
- 1:   muscle cell attachment variant [WBPhenotype:0000716](10|9) (11|8|2)
- 1:   muscle membrane potential variant [WBPhenotype:0002166](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
SH2 domain0.00000000000006711Direct
SH3-domain0.000000000002151Direct
PH domain-like0.00000000007661Direct
Second domain of FERM0.0000009055Direct
Calponin-homology domain, CH-domain0.00008218Direct
Spectrin repeat0.0001009Direct
GTPase activation domain, GAP0.0002351Direct
Protein kinase-like (PK-like)0.0003673Direct
(Phosphotyrosine protein) phosphatases II0.0007598Direct
Voltage-gated potassium channels0.0007772Direct
Cysteine-rich domain0.001056Inherited
Growth factor receptor domain0.003022Inherited
Fibronectin type III0.004385Inherited
DBL homology domain (DH-domain)0.004668Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.009651Inherited
Actin-like ATPase domain0.01183Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
SH2 domain0.000000000001295Direct
SH3-domain0.000000000003659Direct
LIM domain0.0000001433Direct
Second domain of FERM0.0000009295Direct
Third domain of FERM0.000001044Direct
First domain of FERM0.000003608Direct
Spectrin repeat0.00004012Direct
Calponin-homology domain, CH-domain0.00008833Direct
Pleckstrin-homology domain (PH domain)0.0001437Direct
Phosphotyrosine-binding domain (PTB)0.000385Direct
BCR-homology GTPase activation domain (BH-domain)0.000385Direct
Protein kinases, catalytic subunit0.0004321Direct
I set domains0.00454Inherited
DBL homology domain (DH-domain)0.00454Inherited
Voltage-gated potassium channels0.006403Inherited
Actin/HSP700.007598Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
SH2 domain0.00000000000005248Direct
SH3-domain0.000000000001689Direct
PH domain-like0.00000000006042Direct
Second domain of FERM0.0000007286Direct
Calponin-homology domain, CH-domain0.00006702Direct
Spectrin repeat0.00008238Direct
GTPase activation domain, GAP0.0001923Direct
Protein kinase-like (PK-like)0.0003017Direct
(Phosphotyrosine protein) phosphatases II0.0006282Direct
Voltage-gated potassium channels0.0006428Direct
Cysteine-rich domain0.000875Direct
Growth factor receptor domain0.002541Inherited
Fibronectin type III0.003703Inherited
DBL homology domain (DH-domain)0.003948Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.008245Inherited
Actin-like ATPase domain0.01015Inherited
BAR/IMD domain-like0.01094Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000000422Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0000001121Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0000001127Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.000001859Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.00003019Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.00003019Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0003794Direct
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0007118Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.008098Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000000006657Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.000001859Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0003794Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)