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Worm Phenotype (WP): other abnormality early emb

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   development variant [WBPhenotype:0000518] <7>(508|582) (508|247|69)
+ + + + 4:   organism development variant [WBPhenotype:0000531] <10>(506|581) (506|247|69)
+ + + 3:   embryonic development variant [WBPhenotype:0000749] <21>(447|536) (447|232|64)
+ + + 3:   lethal [WBPhenotype:0000062] <5>(500|579) (500|246|69)
+ + 2:   embryonic lethal [WBPhenotype:0000050] <7>(445|536) (445|231|64)
+ 1:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
0:   other abnormality early emb [WBPhenotype:0001007] <2>(11|6) (11|2|1)
- 1:   complex phenotype early emb [WBPhenotype:0001011](0|0) (0|0|0)
- 1:   pleiotropic defects severe early emb [WBPhenotype:0000270](11|6) (11|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Zn-binding ribosomal proteins0.00000000000007849Direct
Translation proteins SH3-like domain0.0000000000004084Direct
GroEL-intermediate domain like0.000003972Direct
GroEL apical domain-like0.000003972Direct
GroEL equatorial domain-like0.000003972Direct
Nucleotidylyl transferase0.00001569Direct
Class II aaRS and biotin synthetases0.00004309Direct
S15/NS1 RNA-binding domain0.0003896Direct
Translation proteins0.00163Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001645Inherited
Nucleic acid-binding proteins0.003692Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cold shock DNA-binding domain-like0.0000005879Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.000004106Direct
Group II chaperonin (CCT, TRIC), apical domain0.000004106Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000004106Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000464Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000358Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-binding ribosomal proteins0.00000000000006207Direct
Translation proteins SH3-like domain0.0000000000003234Direct
GroEL equatorial domain-like0.000003245Direct
GroEL apical domain-like0.000003245Direct
GroEL-intermediate domain like0.000003245Direct
Nucleotidylyl transferase0.00001286Direct
Class II aaRS and biotin synthetases0.00003545Direct
S15/NS1 RNA-binding domain0.0003233Direct
Translation proteins0.001371Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001384Inherited
Nucleic acid-binding proteins0.003134Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000003245Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000003245Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000003245Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)