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Worm Phenotype (WP): organism pathogen response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + 2:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
+ 1:   organism stress response variant [WBPhenotype:0000067] <20>(75|63) (76|26|7)
0:   organism pathogen response variant [WBPhenotype:0001012] <10>(22|20) (23|10|3)
- 1:   pathogen resistance increased [WBPhenotype:0001014] <4>(5|3) (5|1|0)
- 1:   pathogen susceptibility increased [WBPhenotype:0001013] <4>(7|5) (7|3|1)
- 1:   pathogen adherence variant [WBPhenotype:0001415] <3>(0|0) (0|0|0)
- 1:   pathogen load variant [WBPhenotype:0001819] <3>(1|0) (1|0|0)
- 1:   innate immune response variant [WBPhenotype:0002164] <2>(8|9) (9|3|1)
- 1:   pathogen infected pharynx variant [WBPhenotype:0001721] <2>(0|0) (0|0|0)
- 1:   pathogen induced gene expression variant [WBPhenotype:0001857] <1>(8|9) (9|3|1)
- 1:   pathogen release variant [WBPhenotype:0002172] <1>(1|1) (1|0|0)
- 1:   organism pathogen response defective [WBPhenotype:0002515](0|0) (0|0|0)
- 1:   pathogen avoidance variant [WBPhenotype:0002378](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex, superhelical domain0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
DEATH domain0.00001027Direct
PLC-like phosphodiesterases0.00001052Direct
Histone-fold0.00008393Direct
DBL homology domain (DH-domain)0.0001454Direct
PH domain-like0.0005802Direct
Leucine zipper domain0.001938Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.006979Inherited
WD40 repeat-like0.02065Inherited
Cysteine-rich domain0.02281Inherited
Multidrug resistance efflux transporter EmrE0.02402Inherited
Heme-dependent peroxidases0.05452Inherited
RNA-binding domain, RBD0.1131Inherited
(Trans)glycosidases0.1151Inherited
HLH, helix-loop-helix DNA-binding domain0.1747Inherited
Saposin0.1801Inherited
HSP20-like chaperones0.2777Inherited
GroEL apical domain-like0.4317Inherited
GroEL equatorial domain-like0.4317Inherited
GroEL-intermediate domain like0.4317Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Mammalian PLC0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
PLC-like (P variant)0.00000000009631Direct
Rhodopsin-like0.0000004363Direct
Nucleosome core histones0.000001904Direct
Pleckstrin-homology domain (PH domain)0.00004774Direct
DBL homology domain (DH-domain)0.0001439Direct
HSP200.0001969Direct
Leucine zipper domain0.001833Inherited
WD40-repeat0.01153Inherited
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.03514Inherited
Myeloperoxidase-like0.05085Inherited
Canonical RBD0.07764Inherited
G proteins0.1103Inherited
Armadillo repeat0.153Inherited
HLH, helix-loop-helix DNA-binding domain0.1976Inherited
Group II chaperonin (CCT, TRIC), apical domain0.287Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.287Inherited
Proteasome subunits0.5601Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
DEATH domain0.000008352Direct
PLC-like phosphodiesterases0.000008558Direct
Histone-fold0.00006872Direct
DBL homology domain (DH-domain)0.0001193Direct
PH domain-like0.0004806Direct
Leucine zipper domain0.001624Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005955Inherited
WD40 repeat-like0.01798Inherited
Cysteine-rich domain0.01991Inherited
Multidrug resistance efflux transporter EmrE0.02098Inherited
Tubulin C-terminal domain-like0.02952Inherited
Heme-dependent peroxidases0.04842Inherited
RNA-binding domain, RBD0.1025Inherited
(Trans)glycosidases0.1043Inherited
HLH, helix-loop-helix DNA-binding domain0.1603Inherited
Saposin0.1654Inherited
HSP20-like chaperones0.2592Inherited
GroEL-intermediate domain like0.4109Inherited
GroEL equatorial domain-like0.4109Inherited
GroEL apical domain-like0.4109Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0006849Direct
    53300,56436
  • 53300 - vWA-like
  • 56436 - C-type lectin-like
  • 0.01502Inherited
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.07472Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4109Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.4109Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4109Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)