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Worm Phenotype (WP): organism pathogen response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <5>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(494|573) (495|248|68)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <10>(354|423) (357|200|60)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(343|412) (348|198|59)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|108) (120|53|16)
0:   organism pathogen response variant [WBPhenotype:0001012] <9>(23|25) (24|10|3)
- 1:   pathogen resistance increased [WBPhenotype:0001014] <4>(5|4) (5|1|0)
- 1:   pathogen susceptibility increased [WBPhenotype:0001013] <4>(6|6) (6|3|1)
- 1:   pathogen adherence variant [WBPhenotype:0001415] <3>(0|0) (0|0|0)
- 1:   pathogen load variant [WBPhenotype:0001819] <3>(2|0) (2|0|0)
- 1:   pathogen infected pharynx variant [WBPhenotype:0001721] <2>(0|0) (0|0|0)
- 1:   innate immune response variant [WBPhenotype:0002164] <1>(10|11) (11|3|1)
- 1:   pathogen avoidance variant [WBPhenotype:0002378](0|0) (0|0|0)
- 1:   pathogen induced gene expression variant [WBPhenotype:0001857](1|1) (1|0|0)
- 1:   pathogen release variant [WBPhenotype:0002172](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Histone-fold0.00000001357Direct
PLC-like phosphodiesterases0.00001419Direct
PH domain-like0.00006741Direct
DBL homology domain (DH-domain)0.00008874Direct
Cysteine-rich domain0.000296Direct
Multidrug resistance efflux transporter EmrE0.003782Inherited
Leucine zipper domain0.005702Inherited
Saposin0.005711Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.01482Inherited
WD40 repeat-like0.03518Inherited
Heme-dependent peroxidases0.04582Inherited
(Trans)glycosidases0.05737Inherited
RNA-binding domain, RBD0.06659Inherited
HSP20-like chaperones0.09839Inherited
GroEL-intermediate domain like0.2459Inherited
GroEL apical domain-like0.2459Inherited
GroEL equatorial domain-like0.2459Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2459Inherited
HLH, helix-loop-helix DNA-binding domain0.4734Inherited
Tubulin C-terminal domain-like0.4991Inherited
Protein kinase-like (PK-like)0.5452Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Mammalian PLC0Direct
Nucleosome core histones0.00000000008096Direct
Rhodopsin-like0.0000006735Direct
Pleckstrin-homology domain (PH domain)0.00001176Direct
PLC-like (P variant)0.00002175Direct
DBL homology domain (DH-domain)0.00006949Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.0001558Direct
HSP200.0001588Direct
Erythroid transcription factor GATA-10.0009371Direct
Leucine zipper domain0.00469Inherited
WD40-repeat0.007291Inherited
Myeloperoxidase-like0.03939Inherited
Canonical RBD0.05369Inherited
Armadillo repeat0.08642Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1502Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1502Inherited
Protein kinases, catalytic subunit0.2081Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2259Inherited
Proteasome subunits0.2259Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.3795Inherited
HLH, helix-loop-helix DNA-binding domain0.4516Inherited
C-type lectin domain0.8085Inherited
G proteins1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Lipovitellin-phosvitin complex, superhelical domain0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Histone-fold0.00000001075Direct
PLC-like phosphodiesterases0.00001149Direct
PH domain-like0.00005482Direct
DBL homology domain (DH-domain)0.0000723Direct
Cysteine-rich domain0.0002426Direct
Multidrug resistance efflux transporter EmrE0.003183Inherited
Leucine zipper domain0.004821Inherited
Saposin0.004829Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.01274Inherited
WD40 repeat-like0.03083Inherited
Heme-dependent peroxidases0.04036Inherited
(Trans)glycosidases0.05086Inherited
RNA-binding domain, RBD0.05926Inherited
HSP20-like chaperones0.08857Inherited
GroEL equatorial domain-like0.2278Inherited
GroEL-intermediate domain like0.2278Inherited
GroEL apical domain-like0.2278Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2278Inherited
Nucleotidylyl transferase0.4516Inherited
HLH, helix-loop-helix DNA-binding domain0.4516Inherited
Tubulin C-terminal domain-like0.477Inherited
Protein kinase-like (PK-like)0.5228Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0001624Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.003376Inherited
    53300,56436
  • 53300 - vWA-like
  • 56436 - C-type lectin-like
  • 0.01274Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.2278Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2278Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2278Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)