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Worm Phenotype (WP): programmed cell death variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <5>
+ + + 3:   physiology variant [WBPhenotype:0000519] <6>(490|567) (491|248|69)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <27>(143|144) (143|64|18)
+ 1:   cell death variant [WBPhenotype:0000729] <3>(57|51) (58|17|5)
0:   programmed cell death variant [WBPhenotype:0001172] <3>(55|48) (56|16|5)
- 1:   apoptosis variant [WBPhenotype:0000730] <13>(50|44) (50|13|5)
- 1:   non apoptotic cell death variant [WBPhenotype:0001173] <2>(3|3) (3|1|0)
- 1:   somatic cell death variant [WBPhenotype:0000965](3|2) (3|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Clathrin adaptor appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
DLC0Direct
PX domain0Direct
VPS9 domain0Direct
RBP11-like subunits of RNA polymerase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0.0000000000000469Direct
FYVE/PHD zinc finger0.000000002545Direct
Cullin homology domain0.00000004552Direct
GroEL apical domain-like0.0000001309Direct
PH domain-like0.0000004268Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000005929Direct
GroEL-intermediate domain like0.000001362Direct
GroEL equatorial domain-like0.000001362Direct
Cullin repeat-like0.000001362Direct
ENTH/VHS domain0.000006207Direct
Histone-fold0.00001517Direct
Sm-like ribonucleoproteins0.0000649Direct
SH3-domain0.00007617Direct
Nucleic acid-binding proteins0.00007617Direct
Integrin domains0.00009568Direct
DNA repair protein MutS, domain III0.00009568Direct
5' to 3' exonuclease, C-terminal subdomain0.00009568Direct
BAR/IMD domain-like0.0002022Direct
Activating enzymes of the ubiquitin-like proteins0.0003125Direct
F1F0 ATP synthase subunit C0.0004229Direct
Cupredoxins0.0004229Direct
Tubby C-terminal domain-like0.0004229Direct
Caspase-like0.0004229Direct
DEATH domain0.0006375Direct
WD40 repeat-like0.0007691Direct
SNARE-like0.0008504Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001139Inherited
Sec1/munc18-like (SM) proteins0.001139Inherited
Lamin A/C globular tail domain0.001942Inherited
SET domain0.002703Inherited
PIN domain-like0.004318Inherited
Hect, E3 ligase catalytic domain0.007069Inherited
Intermediate filament protein, coiled coil region0.01537Inherited
Chromo domain-like0.09314Inherited
POZ domain0.1478Inherited
Saposin0.1933Inherited
RNA-binding domain, RBD0.2728Inherited
Protein kinase-like (PK-like)0.3819Inherited
Metallo-dependent phosphatases0.3844Inherited
"Winged helix" DNA-binding domain0.5908Inherited
ARM repeat0.609Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6391Inherited
HLH, helix-loop-helix DNA-binding domain0.8292Inherited
Calcium ATPase, transmembrane domain M0.8843Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.8843Inherited
Calcium ATPase, transduction domain A0.9157Inherited
Cysteine proteinases1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Arginine methyltransferase0Direct
RNA-polymerase beta0Direct
Integrin domains0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Myotubularin-like phosphatases0Direct
PX domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain6.29e-16Direct
Skp1 dimerisation domain-like0.0000000000001985Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000001004Direct
Cullin homology domain0.0000001335Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000009607Direct
RecA protein-like (ATPase-domain)0.00000143Direct
Nucleosome core histones0.00005817Direct
BTB/POZ domain0.00009459Direct
Ephrin ectodomain0.0001572Direct
5' to 3' exonuclease, C-terminal subdomain0.0001572Direct
DNA repair protein MutS, domain III0.0001572Direct
5' to 3' exonuclease catalytic domain0.0001572Direct
Caspase catalytic domain0.0001572Direct
Cold shock DNA-binding domain-like0.0002374Direct
Clathrin adaptor core protein0.0002519Direct
SH3-domain0.0005203Direct
BAR domain0.0006913Direct
Ubiquitin activating enzymes (UBA)0.0006913Direct
F1F0 ATP synthase subunit C0.0006913Direct
Phosphotyrosine-binding domain (PTB)0.001172Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.001172Inherited
Histone lysine methyltransferases0.001393Inherited
Sec1/munc18-like (SM) proteins0.001851Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001851Inherited
Armadillo repeat0.005669Inherited
Translational machinery components0.006983Inherited
Protein kinases, catalytic subunit0.007084Inherited
Hect, E3 ligase catalytic domain0.01136Inherited
Proteasome subunits0.01179Inherited
Intermediate filament protein, coiled coil region0.0245Inherited
Canonical RBD0.3735Inherited
ABC transporter ATPase domain-like0.5735Inherited
G proteins0.7878Inherited
HLH, helix-loop-helix DNA-binding domain0.8137Inherited
Calcium ATPase, transduction domain A0.9024Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
Clathrin adaptor appendage domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
PX domain0Direct
VPS9 domain0Direct
Skp1 dimerisation domain-like0.00000000000003659Direct
FYVE/PHD zinc finger0.000000002015Direct
Cullin homology domain0.00000003623Direct
GroEL apical domain-like0.0000001044Direct
PH domain-like0.0000003418Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000004754Direct
GroEL equatorial domain-like0.000001096Direct
Cullin repeat-like0.000001096Direct
GroEL-intermediate domain like0.000001096Direct
ENTH/VHS domain0.000005016Direct
Histone-fold0.00001229Direct
Sm-like ribonucleoproteins0.00005279Direct
SH3-domain0.000062Direct
Nucleic acid-binding proteins0.000062Direct
DNA repair protein MutS, domain III0.000078Direct
Integrin domains0.000078Direct
5' to 3' exonuclease, C-terminal subdomain0.000078Direct
BAR/IMD domain-like0.0001652Direct
Activating enzymes of the ubiquitin-like proteins0.0002561Direct
F1F0 ATP synthase subunit C0.0003475Direct
Caspase-like0.0003475Direct
Cupredoxins0.0003475Direct
Tubby C-terminal domain-like0.0003475Direct
DEATH domain0.000526Direct
WD40 repeat-like0.0006354Direct
SNARE-like0.0007028Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000943Direct
Sec1/munc18-like (SM) proteins0.000943Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000943Direct
Lamin A/C globular tail domain0.001621Inherited
SET domain0.002268Inherited
PIN domain-like0.003645Inherited
Hect, E3 ligase catalytic domain0.006005Inherited
Intermediate filament protein, coiled coil region0.01324Inherited
Chromo domain-like0.08352Inherited
POZ domain0.1346Inherited
Saposin0.1773Inherited
RNA-binding domain, RBD0.2537Inherited
Protein kinase-like (PK-like)0.3603Inherited
Metallo-dependent phosphatases0.3627Inherited
"Winged helix" DNA-binding domain0.5684Inherited
ARM repeat0.5865Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6171Inherited
HLH, helix-loop-helix DNA-binding domain0.8129Inherited
Calcium ATPase, transmembrane domain M0.8704Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.8704Inherited
Calcium ATPase, transduction domain A0.9031Inherited
Cysteine proteinases1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000001006Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001096Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000001096Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000078Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000078Direct
    51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0.000943Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00928Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.01139Inherited
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.03147Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.8704Inherited
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.9641Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001096Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.01324Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.8704Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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